A Comparative Analysis of Large-Scale Network Visualization Tools
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Networkx Tutorial
5.03.2020 tutorial NetworkX tutorial Source: https://github.com/networkx/notebooks (https://github.com/networkx/notebooks) Minor corrections: JS, 27.02.2019 Creating a graph Create an empty graph with no nodes and no edges. In [1]: import networkx as nx In [2]: G = nx.Graph() By definition, a Graph is a collection of nodes (vertices) along with identified pairs of nodes (called edges, links, etc). In NetworkX, nodes can be any hashable object e.g. a text string, an image, an XML object, another Graph, a customized node object, etc. (Note: Python's None object should not be used as a node as it determines whether optional function arguments have been assigned in many functions.) Nodes The graph G can be grown in several ways. NetworkX includes many graph generator functions and facilities to read and write graphs in many formats. To get started though we'll look at simple manipulations. You can add one node at a time, In [3]: G.add_node(1) add a list of nodes, In [4]: G.add_nodes_from([2, 3]) or add any nbunch of nodes. An nbunch is any iterable container of nodes that is not itself a node in the graph. (e.g. a list, set, graph, file, etc..) In [5]: H = nx.path_graph(10) file:///home/szwabin/Dropbox/Praca/Zajecia/Diffusion/Lectures/1_intro/networkx_tutorial/tutorial.html 1/18 5.03.2020 tutorial In [6]: G.add_nodes_from(H) Note that G now contains the nodes of H as nodes of G. In contrast, you could use the graph H as a node in G. -
Networkx: Network Analysis with Python
NetworkX: Network Analysis with Python Salvatore Scellato Full tutorial presented at the XXX SunBelt Conference “NetworkX introduction: Hacking social networks using the Python programming language” by Aric Hagberg & Drew Conway Outline 1. Introduction to NetworkX 2. Getting started with Python and NetworkX 3. Basic network analysis 4. Writing your own code 5. You are ready for your project! 1. Introduction to NetworkX. Introduction to NetworkX - network analysis Vast amounts of network data are being generated and collected • Sociology: web pages, mobile phones, social networks • Technology: Internet routers, vehicular flows, power grids How can we analyze this networks? Introduction to NetworkX - Python awesomeness Introduction to NetworkX “Python package for the creation, manipulation and study of the structure, dynamics and functions of complex networks.” • Data structures for representing many types of networks, or graphs • Nodes can be any (hashable) Python object, edges can contain arbitrary data • Flexibility ideal for representing networks found in many different fields • Easy to install on multiple platforms • Online up-to-date documentation • First public release in April 2005 Introduction to NetworkX - design requirements • Tool to study the structure and dynamics of social, biological, and infrastructure networks • Ease-of-use and rapid development in a collaborative, multidisciplinary environment • Easy to learn, easy to teach • Open-source tool base that can easily grow in a multidisciplinary environment with non-expert users -
STATS 701 Data Analysis Using Python Lecture 27: Apis and Graph Processing Some Slides Adapted from C
STATS 701 Data Analysis using Python Lecture 27: APIs and Graph Processing Some slides adapted from C. Budak Previously: Scraping Data from the Web We used BeautifulSoup to process HTML that we read directly We had to figure out where to find the data in the HTML This was okay for simple things like Wikipedia… ...but what about large, complicated data sets? E.g., Climate data from NOAA; Twitter/reddit/etc.; Google maps Many websites support APIs, which make these tasks simpler Instead of scraping for what we want, just ask! Example: ask Google Maps for a computer repair shop near a given address Three common API approaches Via a Python package Service (e.g., Google maps, ESRI*) provides library for querying DB Example: from arcgis.gis import GIS Via a command-line tool Ultimately, all three of these approaches end up submitting an Example: twurl https://developer.twitter.com/ HTTP request to a server, which returns information in the form of a Via HTTP requests JSON or XML file, typically. We submit an HTTP request to a server Supply additional parameters in URL to specify our query Example: https://www.yelp.com/developers/documentation/v3/business_search * ESRI is a GIS service, to which the university has a subscription: https://developers.arcgis.com/python/ Web service APIs Step 1: Create URL with query parameters Example (non-working): www.example.com/search?key1=val1&key2=val2 Step 2: Make an HTTP request Communicates to the server what kind of action we wish to perform https://en.wikipedia.org/wiki/Hypertext_Transfer_Protocol#Request_methods Step 3: Server returns a response to your request May be as simple as a code (e.g., 404 error).. -
Graph Database Fundamental Services
Bachelor Project Czech Technical University in Prague Faculty of Electrical Engineering F3 Department of Cybernetics Graph Database Fundamental Services Tomáš Roun Supervisor: RNDr. Marko Genyk-Berezovskyj Field of study: Open Informatics Subfield: Computer and Informatic Science May 2018 ii Acknowledgements Declaration I would like to thank my advisor RNDr. I declare that the presented work was de- Marko Genyk-Berezovskyj for his guid- veloped independently and that I have ance and advice. I would also like to thank listed all sources of information used Sergej Kurbanov and Herbert Ullrich for within it in accordance with the methodi- their help and contributions to the project. cal instructions for observing the ethical Special thanks go to my family for their principles in the preparation of university never-ending support. theses. Prague, date ............................ ........................................... signature iii Abstract Abstrakt The goal of this thesis is to provide an Cílem této práce je vyvinout webovou easy-to-use web service offering a database službu nabízející databázi neorientova- of undirected graphs that can be searched ných grafů, kterou bude možno efektivně based on the graph properties. In addi- prohledávat na základě vlastností grafů. tion, it should also allow to compute prop- Tato služba zároveň umožní vypočítávat erties of user-supplied graphs with the grafové vlastnosti pro grafy zadané uži- help graph libraries and generate graph vatelem s pomocí grafových knihoven a images. Last but not least, we implement zobrazovat obrázky grafů. V neposlední a system that allows bulk adding of new řadě je také cílem navrhnout systém na graphs to the database and computing hromadné přidávání grafů do databáze a their properties. -
Gephi Tools for Network Analysis and Visualization
Frontiers of Network Science Fall 2018 Class 8: Introduction to Gephi Tools for network analysis and visualization Boleslaw Szymanski CLASS PLAN Main Topics • Overview of tools for network analysis and visualization • Installing and using Gephi • Gephi hands-on labs Frontiers of Network Science: Introduction to Gephi 2018 2 TOOLS OVERVIEW (LISTED ALPHABETICALLY) Tools for network analysis and visualization • Computing model and interface – Desktop GUI applications – API/code libraries, Web services – Web GUI front-ends (cloud, distributed, HPC) • Extensibility model – Only by the original developers – By other users/developers (add-ins, modules, additional packages, etc.) • Source availability model – Open-source – Closed-source • Business model – Free of charge – Commercial Frontiers of Network Science: Introduction to Gephi 2018 3 TOOLS CINET CyberInfrastructure for NETwork science • Accessed via a Web-based portal (http://cinet.vbi.vt.edu/granite/granite.html) • Supported by grants, no charge for end users • Aims to provide researchers, analysts, and educators interested in Network Science with an easy-to-use cyber-environment that is accessible from their desktop and integrates into their daily work • Users can contribute new networks, data, algorithms, hardware, and research results • Primarily for research, teaching, and collaboration • No programming experience is required Frontiers of Network Science: Introduction to Gephi 2018 4 TOOLS Cytoscape Network Data Integration, Analysis, and Visualization • A standalone GUI application -
Gephi-Poster-Sunbelt-July10.Pdf
The Open Graph Viz Platform Gephi is a new open-source network visualization platform. It aims to create a sustainable software and technical Download Gephi at ecosystem, driven by a large international open-source community, who shares common interests in networks and http://gephi.org complex systems. The rendering engine can handle networks larger than 100K elements and guarantees responsiveness. Designed to make data navigation and manipulation easy, it aims to fulll the complete chain from data importing to aesthetics renements and interaction. Particular focus is made on the software usability and interoperability with other tools. A lot of eorts are made to facilitate the community growth, by providing tutorials, plug-ins development documentation, support and student projects. Current developments include Dynamic Network Analysis (DNA) and Goals spigots (Emails, Twitter, Facebook …) import. Create the Photoshop of network visualization, by combining a rich set of Gephi aims at being built-in features and a sustainable, open to friendly user interface. many kind of users, and creating a large, Design a modular and international and extensible software diverse open-source architecture, facilitate plug-ins development, community reuse and mashup. Build a large, international Features Highlight and diverse open-source community. Community Join the network, participate designing the roadmap, get help to quickly code plug-ins or simply share your ideas. Select, move, paint, resize, connect, group Just with the mouse Export in SVG/PDF to include your infographics Metrics Architecture * Betweenness, Eigenvector, Closeness The modular architecture allows developers adding and extending features * Eccentricity with ease by developing plug-ins. Gephi can also be used as Java library in * Diameter, Average Shortest Path other applications and build for instance, a layout server. -
Plantuml Language Reference Guide (Version 1.2021.2)
Drawing UML with PlantUML PlantUML Language Reference Guide (Version 1.2021.2) PlantUML is a component that allows to quickly write : • Sequence diagram • Usecase diagram • Class diagram • Object diagram • Activity diagram • Component diagram • Deployment diagram • State diagram • Timing diagram The following non-UML diagrams are also supported: • JSON Data • YAML Data • Network diagram (nwdiag) • Wireframe graphical interface • Archimate diagram • Specification and Description Language (SDL) • Ditaa diagram • Gantt diagram • MindMap diagram • Work Breakdown Structure diagram • Mathematic with AsciiMath or JLaTeXMath notation • Entity Relationship diagram Diagrams are defined using a simple and intuitive language. 1 SEQUENCE DIAGRAM 1 Sequence Diagram 1.1 Basic examples The sequence -> is used to draw a message between two participants. Participants do not have to be explicitly declared. To have a dotted arrow, you use --> It is also possible to use <- and <--. That does not change the drawing, but may improve readability. Note that this is only true for sequence diagrams, rules are different for the other diagrams. @startuml Alice -> Bob: Authentication Request Bob --> Alice: Authentication Response Alice -> Bob: Another authentication Request Alice <-- Bob: Another authentication Response @enduml 1.2 Declaring participant If the keyword participant is used to declare a participant, more control on that participant is possible. The order of declaration will be the (default) order of display. Using these other keywords to declare participants -
Travels of Baron Munchausen
Songs for Scribus Travels of Baron Munchausen Songs for Scribus Travels of Baron Munchausen Travels of Baron Munchausen How should I disengage myself? I was not much pleased with my awkward situation – with a wolf face to face; our ogling was not of the most pleasant kind. If I withdrew my arm, then the animal would fly the more furiously upon me; that I saw in his flaming eyes. In short, I laid hold of his tail, turned him inside out like a glove, and flung him to the ground, where I left him. On January 3 2011, the first working day of the year, OSP gathered around Scribus. We wanted to explore framerendering, bootstrapping Scribus and to play around with the incredible adventures of Baron von Munchausen. The idea was to produce some kind of experimental result, a follow- up of to our earlier attempts to turn a frog into a prince. One day we asked Scribus team-members what their favourite Scribus feature was. After some hesitation they pointed us to the magical framerender. Framerenderer The Framerender is an image frame with a wrapper, a GUI, and a configuration scheme. External programs are invoked from inside of Scribus, and their output is placed into the frame! By default, the current Scribus is configured to host the following friends: LaTeX, Lilypond, gnuplot, dot/GraphViz and POV-Ray Today we are working with Lilypond. We are also creating cus- tom tools that generate PostScript/PDF via Imagemagick and other command line tools. Lilypond LilyPond is a music engraving program, devoted to producing the highest-quality sheet music possible. -
Fastnet: an R Package for Fast Simulation and Analysis of Large-Scale Social Networks
JSS Journal of Statistical Software November 2020, Volume 96, Issue 7. doi: 10.18637/jss.v096.i07 fastnet: An R Package for Fast Simulation and Analysis of Large-Scale Social Networks Xu Dong Luis Castro Nazrul Shaikh Tamr Inc. World Bank Cecareus Inc. Abstract Traditional tools and software for social network analysis are seldom scalable and/or fast. This paper provides an overview of an R package called fastnet, a tool for scaling and speeding up the simulation and analysis of large-scale social networks. fastnet uses multi-core processing and sub-graph sampling algorithms to achieve the desired scale-up and speed-up. Simple examples, usages, and comparisons of scale-up and speed-up as compared to other R packages, i.e., igraph and statnet, are presented. Keywords: social network analysis, network simulation, network metrics, multi-core process- ing, sampling. 1. Introduction It has been about twenty years since the introduction of social network analysis (SNA) soft- ware such as Pajek (Batagelj and Mrvar 1998) and UCINET (Borgatti, Everett, and Freeman 2002). Though these software packages are still existent, the last ten years have witnessed a significant change in the needs and aspiration of researchers working in the field. The growth of popular online social networks, such as Facebook, Twitter, LinkedIn, Snapchat, and the availability of data from large systems such as the telecommunication system and the inter- net of things (IoT) has ushered in the need to focus on computational and data management issues associated with SNA. During this period, several Python (Van Rossum et al. 2011) and Java based SNA tools, such as NetworkX (Hagberg, Schult, and Swart 2008) and SNAP (Leskovec and Sosič 2016), and R (R Core Team 2020) packages, such as statnet (Hunter, Handcock, Butts, Goodreau, and Morris 2008; Handcock et al. -
Network Visualization with Igraph
Using igraph for Visualisations Dr Jamsheed Shorish The Australian National University [email protected] 15 July 2013 - Beihang University Introduction I igraph is a network analysis and visualisation software package, currently for R and Python. I It can be found at igraph.sourceforge.net. I For our course, we will be using igraph for R . Screenshot from the igraph website, depicting an Erdős - Rényi graph and associated colour-coded components, or clusters. Installing igraph for R I Installation of igraph for R is very simple–the command is: > install.packages( 'igraph ') I You may need to specify a particular directory if e.g. you don’t have privileges to install to the system location for R : > install.packages( 'igraph ', lib='my/ package/location ') I To load the library, use > library( 'igraph ',lib) I or > library( 'igraph ', lib. loc='my/package/ location ') Loading a Dataset I The first thing to do is to get some data! I For consistency I’ll assume that all data is loaded in graphml format. I This can be exported by the Python networkx package. I To load a network dataset from a file, use: > G = read.graph( 'network.graphml ', format ='graphml ') I Confirm that your dataset is recognised by igraph : > G IGRAPHD-W- 560 1257 -- \ + attr: label (v/c), id (v/c), weight (e/n ), id (e/c) Layout of a Graph I To visualise a network well, use the layout function of igraph to specify the layout prior to plotting. I Different networks work best with different layouts–this is more art than science. -
Performing Knowledge Requirements Analysis for Public Organisations in a Virtual Learning Environment: a Social Network Analysis
chnology Te & n S o o ti ft a w a m r r e Fontenele et al., J Inform Tech Softw Eng 2014, 4:2 o f E Journal of n n I g f i o n DOI: 10.4172/2165-7866.1000134 l e a e n r r i n u g o J ISSN: 2165-7866 Information Technology & Software Engineering Research Article Open Access Performing Knowledge Requirements Analysis for Public Organisations in a Virtual Learning Environment: A Social Network Analysis Approach Fontenele MP1*, Sampaio RB2, da Silva AIB2, Fernandes JHC2 and Sun L1 1University of Reading, School of Systems Engineering, Whiteknights, Reading, RG6 6AH, United Kingdom 2Universidade de Brasília, Campus Universitário Darcy Ribeiro, Brasília, DF, 70910-900, Brasil Abstract This paper describes an application of Social Network Analysis methods for identification of knowledge demands in public organisations. Affiliation networks established in a postgraduate programme were analysed. The course was ex- ecuted in a distance education mode and its students worked on public agencies. Relations established among course participants were mediated through a virtual learning environment using Moodle. Data available in Moodle may be ex- tracted using knowledge discovery in databases techniques. Potential degrees of closeness existing among different organisations and among researched subjects were assessed. This suggests how organisations could cooperate for knowledge management and also how to identify their common interests. The study points out that closeness among organisations and research topics may be assessed through affiliation networks. This opens up opportunities for ap- plying knowledge management between organisations and creating communities of practice. -
Week 2 - Handling Real-World Network Datasets
28/12/2017 Social Networks - - Unit 6 - Week 2 - Handling Real-world Network Datasets X [email protected] ▼ Courses » Social Networks Unit 6 - Week Announcements Course Forum Progress Mentor 2 - Handling Real-world Network Datasets Course outline Week2-assignment1 Course Trailer . FAQ 1) Citation Network is which type of network? 1 point Things to Note Directed Accessing the Portal Undirected Week 1 - Introduction Accepted Answers: Week 2 - Handling Real-world Network Directed Datasets 2) Co-authorship Network is which type of network? 1 point Directed Undirected Lecture 14 - Introduction to Datasets Accepted Answers: Undirected 3) What is the full form of CSV? 1 point Computer Systematic Version Comma Separated Version Comma Separated Values Computer Systematic Values Lecture 15 - Ingredients Network Accepted Answers: Comma Separated Values 4) Which of the following is True with respect to the function read_weighted_edgelist() 1 point This function can be used to read a weighted network dataset, however, the weights should only be in string format. Lecture 16 - This function can be used to read a weighted network dataset, however, the weights should only be numeric. Synonymy Network This function can be used to read a weighted network dataset and the weights can be in any format. The statement is wrong; such a function does not exist. Accepted Answers: This function can be used to read a weighted network dataset, however, the weights should only be numeric. Lecture 17 - Web 5) Choose the one that is False out of the following: 1 point Graph GML stands for Graph Modeling Language. https://onlinecourses.nptel.ac.in/noc17_cs41/unit?unit=42&assessment=47 1/4 28/12/2017 Social Networks - - Unit 6 - Week 2 - Handling Real-world Network Datasets GML stores the data in the form of tags just like XML.