Reference Genome Assembly for Australian Ascochyta Rabiei Isolate Arme14
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Phaeoseptaceae, Pleosporales) from China
Mycosphere 10(1): 757–775 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/17 Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China Liu NG1,2,3,4,5, Hyde KD4,5, Bhat DJ6, Jumpathong J3 and Liu JK1*,2 1 School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China 2 Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, P.R. China 3 Faculty of Agriculture, Natural Resources and Environment, Naresuan University, Phitsanulok 65000, Thailand 4 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 5 Mushroom Research Foundation, Chiang Rai 57100, Thailand 6 No. 128/1-J, Azad Housing Society, Curca, P.O., Goa Velha 403108, India Liu NG, Hyde KD, Bhat DJ, Jumpathong J, Liu JK 2019 – Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China. Mycosphere 10(1), 757–775, Doi 10.5943/mycosphere/10/1/17 Abstract A new hyphomycete genus, Pleopunctum, is introduced to accommodate two new species, P. ellipsoideum sp. nov. (type species) and P. pseudoellipsoideum sp. nov., collected from decaying wood in Guizhou Province, China. The genus is characterized by macronematous, mononematous conidiophores, monoblastic conidiogenous cells and muriform, oval to ellipsoidal conidia often with a hyaline, elliptical to globose basal cell. Phylogenetic analyses of combined LSU, SSU, ITS and TEF1α sequence data of 55 taxa were carried out to infer their phylogenetic relationships. The new taxa formed a well-supported subclade in the family Phaeoseptaceae and basal to Lignosphaeria and Thyridaria macrostomoides. -
Ascochyta Pisi, a Disease of Seed Peas
April, 1906.} Ascoehytapisi—Disease of Seed Peas. 507 ASCOCHYTA PISI,—A DISEASE OF SEED PEAS.1 J. M. VAN HOOK. During the season of 1904 and 1905, there was an exceptional blighting2 of peas from Ascochyta pisi Lib. The disease was general throughout the state and occasioned loss especially where peas are grown in large areas for canning purposes. My attention was first called to this trouble June 24, 1904, on French June field peas, which had been sown with oats as a for- age crop. Most of the peas at this time, were about two feet high and just beginning to bloom. The lower leaves were, for the most part, dead. A few plants were wilting after several days of sunshine following continuous wet weather. Other stunted peas grew among these, some of which never attained a height greater than a few inches. Appearance on stems, leaves, pods and seed.—A close examina- tion of the plants showed that the stems had been attacked at many points, frequently as high as one and one-half feet from the ground, though most severely near the ground where the disease starts. In the beginning, dead areas were formed on the stem in the form of oval or elongated lesions. At a point, from the top of the ground to two or three inches above the ground, these lesions were so numerous and had spread so rapidly as to become continuous, leaving the stem encircled by a dead area. In some cases, the woody part of the stem was also dead, though the greater number of such plants still remained green above. -
A Mechanistic Weather-Driven Model for Ascochyta Rabiei Infection and Disease Development in Chickpea
plants Article A Mechanistic Weather-Driven Model for Ascochyta rabiei Infection and Disease Development in Chickpea Irene Salotti and Vittorio Rossi * Department of Sustainable Crop Production (DI.PRO.VES.), Università Cattolica del Sacro Cuore, Via E. Parmense 84, 29122 Piacenza, Italy; [email protected] * Correspondence: [email protected] Abstract: Ascochyta blight caused by Ascochyta rabiei is an important disease of chickpea. By using systems analysis, we retrieved and analyzed the published information on A. rabiei to develop a mechanistic, weather-driven model for the prediction of Ascochyta blight epidemics. The ability of the model to predict primary infections was evaluated using published data obtained from trials conducted in Washington (USA) in 2004 and 2005, Israel in 1996 and 1998, and Spain from 1988 to 1992. The model showed good accuracy and specificity in predicting primary infections. The probability of correctly predicting infections was 0.838 and the probability that there was no infection when not predicted was 0.776. The model’s ability to predict disease progress during the growing season was also evaluated by using data collected in Australia from 1996 to 1998 and in Southern Italy in 2019; a high concordance correlation coefficient (CCC = 0.947) between predicted and observed data was obtained, with an average distance between real and fitted data of root mean square error (RMSE) = 0.103, indicating that the model was reliable, accurate, and robust in predicting seasonal dynamics of Ascochyta blight epidemics. The model could help growers schedule fungicide treatments to control Ascochyta blight on chickpea. Citation: Salotti, I.; Rossi, V. -
Taxonomy and Multigene Phylogenetic Evaluation of Novel Species in Boeremia and Epicoccum with New Records of Ascochyta and Didymella (Didymellaceae)
Mycosphere 8(8): 1080–1101 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/8/9 Copyright © Guizhou Academy of Agricultural Sciences Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae) Jayasiri SC1,2, Hyde KD2,3, Jones EBG4, Jeewon R5, Ariyawansa HA6, Bhat JD7, Camporesi E8 and Kang JC1 1 Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guiyang, Guizhou Province 550025, P.R. China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3World Agro forestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201, P. R. China 4Botany and Microbiology Department, College of Science, King Saud University, Riyadh, 1145, Saudi Arabia 5Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius 6Department of Plant Pathology and Microbiology, College of BioResources and Agriculture, National Taiwan University, No.1, Sec.4, Roosevelt Road, Taipei 106, Taiwan, ROC. 7No. 128/1-J, Azad Housing Society, Curca, P.O. Goa Velha, 403108, India 89A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy; A.M.B. CircoloMicologico “Giovanni Carini”, C.P. 314, Brescia, Italy; Società per gliStudiNaturalisticidella Romagna, C.P. 144, Bagnacavallo (RA), Italy *Correspondence: [email protected] Jayasiri SC, Hyde KD, Jones EBG, Jeewon R, Ariyawansa HA, Bhat JD, Camporesi E, Kang JC 2017 – Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae). -
Draft Genome Sequencing and Secretome Analysis of Fungal
www.nature.com/scientificreports OPEN Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta Received: 28 October 2015 Accepted: 04 April 2016 rabiei provides insight into the Published: 19 April 2016 necrotrophic effector repertoire Sandhya Verma, Rajesh Kumar Gazara, Shadab Nizam, Sabiha Parween, Debasis Chattopadhyay & Praveen Kumar Verma Constant evolutionary pressure acting on pathogens refines their molecular strategies to attain successful pathogenesis. Recent studies have shown that pathogenicity mechanisms of necrotrophic fungi are far more intricate than earlier evaluated. However, only a few studies have explored necrotrophic fungal pathogens. Ascochyta rabiei is a necrotrophic fungus that causes devastating blight disease of chickpea (Cicer arietinum). Here, we report a 34.6 megabase draft genome assembly of A. rabiei. The genome assembly covered more than 99% of the gene space and 4,259 simple sequence repeats were identified in the assembly. A total of 10,596 high confidence protein-coding genes were predicted which includes a large and diverse inventory of secretory proteins, transporters and primary and secondary metabolism enzymes reflecting the necrotrophic lifestyle ofA. rabiei. A wide range of genes encoding carbohydrate- active enzymes capable for degradation of complex polysaccharides were also identified. Comprehensive analysis predicted a set of 758 secretory proteins including both classical and non-classical secreted proteins. Several of these predicted secretory proteins showed high cysteine content and numerous tandem repeats. Together, our analyses would broadly expand our knowledge and offer insights into the pathogenesis and necrotrophic lifestyle of fungal phytopathogens. Chickpea (Cicer arietinum L.), an important high-protein source, is an annual legume crop grown worldwide. -
Inventory and Review of Quantitative Models for Spread of Plant Pests for Use in Pest Risk Assessment for the EU Territory1
EFSA supporting publication 2015:EN-795 EXTERNAL SCIENTIFIC REPORT Inventory and review of quantitative models for spread of plant pests for use in pest risk assessment for the EU territory1 NERC Centre for Ecology and Hydrology 2 Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, OX10 8BB, UK ABSTRACT This report considers the prospects for increasing the use of quantitative models for plant pest spread and dispersal in EFSA Plant Health risk assessments. The agreed major aims were to provide an overview of current modelling approaches and their strengths and weaknesses for risk assessment, and to develop and test a system for risk assessors to select appropriate models for application. First, we conducted an extensive literature review, based on protocols developed for systematic reviews. The review located 468 models for plant pest spread and dispersal and these were entered into a searchable and secure Electronic Model Inventory database. A cluster analysis on how these models were formulated allowed us to identify eight distinct major modelling strategies that were differentiated by the types of pests they were used for and the ways in which they were parameterised and analysed. These strategies varied in their strengths and weaknesses, meaning that no single approach was the most useful for all elements of risk assessment. Therefore we developed a Decision Support Scheme (DSS) to guide model selection. The DSS identifies the most appropriate strategies by weighing up the goals of risk assessment and constraints imposed by lack of data or expertise. Searching and filtering the Electronic Model Inventory then allows the assessor to locate specific models within those strategies that can be applied. -
The Susceptibility of Pea (Pisum Sativum L.) to Ascochyta Blight Under Lithuanian Conditions
ISSN 1392-3196 Zemdirbyste-Agriculture Vol. 100, No. 3 (2013) 283 ISSN 1392-3196 / e-ISSN 2335-8947 Zemdirbyste-Agriculture, vol. 100, No. 3 (2013), p. 283‒288 DOI 10.13080/z-a.2013.100.036 The susceptibility of pea (Pisum sativum L.) to ascochyta blight under Lithuanian conditions Irena GAURILČIKIENĖ1, Rūta ČEsNULEvIČIENĖ2 1Institute of Agriculture, Lithuanian Research Centre for Agriculture and Forestry Instituto 1, Akademija, Kėdainiai distr., Lithuania E-mail: [email protected] 2Perloja Experimental station, Lithuanian Research Centre for Agriculture and Forestry sodo 12, Perloja, varėna distr., Lithuania Abstract During the period 2008–2010, experiments were conducted to investigate the severity of ascochyta blight in the crops of semi-leafless field pea (Pisum sativum L.) cultivars ‘Profi’, ‘Eiffel’, ‘simona’, ‘Tinker’, ‘Mascara’ and ‘Pinochio’ in different soil and climate conditions of Lithuania: 1) on a southeast Luvisol (LV) in Perloja, 2) on a Middle Lowland’s Cambisol (CM) in Dotnuva. The study was aimed to identify the susceptibility of various field pea cultivars to ascochyta blight under different agro-ecological conditions and to establish the effects of meteorological factors on the disease severity and to determine the composition of Ascochyta complex on pea plants. In all experimental years, the values of area under disease progress curve (AUDPC) of ascochyta blight were higher in Perloja than in Dotnuva. Among the tested pea cultivars, ‘Tinker’ demonstrated the highest susceptibility to ascochyta blight, while ‘simona’ and ‘Pinochio’ were less susceptible irrespective of the disease infection level. In Perloja, a significant moderate or strong correlation was identified between the AUDPC values of ascochyta blight and the amount of precipitation and sum of effective temperatures (∑ ≥ 5°C) for all field pea cultivars tested. -
Morphological and Genotypic Characterization of Fungi Associated with the Ascochyta Blight Complex in Western Regions of Algeria
CORE Metadata, citation and similar papers at core.ac.uk Provided by European Scientific Journal (European Scientific Institute) European Scientific Journal March 2018 edition Vol.14, No.9 ISSN: 1857 – 7881 (Print) e - ISSN 1857- 7431 Morphological and Genotypic Characterization of Fungi Associated with the Ascochyta Blight Complex in Western Regions of Algeria A. Tadja Laboratory of Plant Protection, Department of Agronomy, University Abdelhamid IbnBadis (UMAB), Mostaganem, Algeria Doi: 10.19044/esj.2018.v14n9p276 URL:http://dx.doi.org/10.19044/esj.2018.v14n9p276 Abstract The study is conducted in two growing areas of garden pea (Pisum sativum L.) in northwestern Algeria. Damages caused by Ascochyta sp complex are important in particular for the variety of Kelvedon Wonder. Observations carried out on the infected plants for several years, indicate the presence of superimposed necrosis of different sizes on all aerial organs. However, these observations do not differentiate symptoms by species. The results of morphological and molecular characterization with sequencing in internal transcribed spacer (ITS) regions and inoculation tests on 32 isolates in the laboratory of symbiosis and plant pathology from Toulouse (France), show a reconciliation of the sequencing by polymerase chain reaction (PCR) products and size necrosis for all Ascochyta pinodes and pinodella. Alone, Ascochyta pisi is distinguished by a smaller size necrosis. On the molecular level, all isolates whose ITS regions were amplified by PCR, expresses similar size products (550 bp). This molecular weight is found on a large set of pathogenic fungi. The three species of Ascochyta sp complex do not exhibit polymorphism for Pisum sativum species and have an identical molecular weight. -
Population Structure of the Faba Bean Blight Pathogen Ascochyta Fabae
Phytopathologia Mediterranea Firenze University Press The international journal of the www.fupress.com/pm Mediterranean Phytopathological Union Research Papers Population structure of the faba bean blight pathogen Ascochyta fabae (teleomorph, Citation: Omri Ben Youssef N., Kerdraon L., Mieuzet L., Halila I., Didymella fabae) in Tunisia Jammezi N., Mbazia A., Kharrat M., Le May C. (2019) Population struc- ture of the faba bean blight pathogen Ascochyta fabae (teleomorph, Didy- Noura OMRI BEN YOUSSEF1,*, Lydie KERDRAON2, Lucie MIEUZET3, mella fabae) in Tunisia. Phytopatho- Imen HALILA1, Noura JAMMEZI1, Ahlem MBAZIA1, Mohamed KHAR- logia Mediterranea 58(1): 81-94. doi: RAT1, Christophe LE MAY3,4,* 10.14601/Phytopathol_Mediterr-23562 1 Laboratoire des Grandes Cultures, Institut National de la Recherche Agronomique de Accepted: October 25, 2018 Tunisie, Université de Carthage, Rue Hédi Karray, EL Manzah, 1004, Tunis, Tunisie 2 Published: May 15, 2019 INRA, UMR, UMR BIOGER, INRA-AgroParisTech, Avenue Lucien Brétignières BP 01 78850 Thiverval-Grignon, France Copyright: © 2019 Omri Ben Youssef 3 INRA, UMR 1349 IGEPP, Domaine de la Motte, 35653 Le Rheu, France N., Kerdraon L., Mieuzet L., Halila I., 4 Agrocampus Ouest, UP ESP, 65 rue de Saint Brieuc, 35043 Rennes, France Jammezi N., Mbazia A., Kharrat M., Le *Corresponding authors: [email protected]; [email protected] May C. This is an open access, peer- reviewed article published by Firenze University Press (http://www.fupress. Abstract. Ascochyta blight, caused by Ascochyta fabae (teleomorph: Didymella fabae) com/pm) and distributed under the has decreased faba bean production in Tunisia and worldwide. The teleomorph has terms of the Creative Commons Attri- recently been observed in Tunisia, raising new questions of how to control this major bution License, which permits unre- stricted use, distribution, and reproduc- disease. -
A Polyphasic Approach to Characterise Phoma and Related Pleosporalean Genera
available online at www.studiesinmycology.org StudieS in Mycology 65: 1–60. 2010. doi:10.3114/sim.2010.65.01 Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera M.M. Aveskamp1, 3*#, J. de Gruyter1, 2, J.H.C. Woudenberg1, G.J.M. Verkley1 and P.W. Crous1, 3 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Dutch Plant Protection Service (PD), Geertjesweg 15, 6706 EA Wageningen, The Netherlands; 3Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands *Correspondence: Maikel M. Aveskamp, [email protected] #Current address: Mycolim BV, Veld Oostenrijk 13, 5961 NV Horst, The Netherlands Abstract: Fungal taxonomists routinely encounter problems when dealing with asexual fungal species due to poly- and paraphyletic generic phylogenies, and unclear species boundaries. These problems are aptly illustrated in the genus Phoma. This phytopathologically significant fungal genus is currently subdivided into nine sections which are mainly based on a single or just a few morphological characters. However, this subdivision is ambiguous as several of the section-specific characters can occur within a single species. In addition, many teleomorph genera have been linked to Phoma, three of which are recognised here. In this study it is attempted to delineate generic boundaries, and to come to a generic circumscription which is more correct from an evolutionary point of view by means of multilocus sequence typing. Therefore, multiple analyses were conducted utilising sequences obtained from 28S nrDNA (Large Subunit - LSU), 18S nrDNA (Small Subunit - SSU), the Internal Transcribed Spacer regions 1 & 2 and 5.8S nrDNA (ITS), and part of the β-tubulin (TUB) gene region. -
Ascochyta Blight of Broad Beans-Didymella Fabae-Ascochyta Fabae Ascochyta Blight Is the Most Severe Disease of Cool-Season Pulses (Davidson and Kimber, 2007)
U.S. Department of Agriculture, Agricultural Research Service Systematic Mycology and Microbiology Laboratory - Invasive Fungi Fact Sheets Ascochyta blight of broad beans-Didymella fabae-Ascochyta fabae Ascochyta blight is the most severe disease of cool-season pulses (Davidson and Kimber, 2007). The species Didymella fabae (anamorph Ascochyta fabae) that attacks Vicia faba can survive and reproduce in and spread from crop debris or be transported in infected seed. Introduction on infected seed occurred in Australia and Canada in the 1970s, and was probably the means for the pathogens original spread to countries outside of southwestern Asia. Ascospores are disseminated by wind from the debris as primary inoculum and secondary cycles are initiated by conidia spread by rain splash from plant lesions. The fungus is host-specific in causing disease but may be able to survive in non-host plants and reproduce on their debris. It is not treated as a phytosanitary risk or listed as an invasive pathogen by major organizations. Seed certification is the primary means of preventing its spread to new areas and the importation of new genotypes of the fungus to areas already infested. Didymella fabae G.J. Jellis & Punith. 1991 (Ascomycetes, Pleosporales) Colonies of Ascochyta fabae on PDA white to ash-white with sparse to abundant pycnidia; reverse cream to light brown. Colonies more yellow on oat agar. Mycelium abundant, velvety, composed of hyaline to yellowish, smooth, branched, septate hyphae. Pycnidia separate partially immersed, yellow to brown, subglobose to globose, 200-250 µm with usually one papillate ostiole. Conidogenous cells hyaline, short subglobose to cylindrical, arising from innermost layer of cells surrounding pycnidial cavity. -
Functional Characterization of Polyketide-Derived
FUNCTIONAL CHARACTERIZATION OF POLYKETIDE-DERIVED SECONDARY METABOLITES SOLANAPYRONES PRODUCED BY THE CHICKPEA BLIGHT PATHOGEN, ASCOCHYTA RABIEI: GENETICS AND CHEMICAL ECOLOGY By WONYONG KIM A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY WASHINGTON STATE UNIVERSITY Department of Plant Pathology AUGUST 2015 To the Faculty of Washington State University: The members of the Committee appointed to examine the dissertation of WONYONG KIM find it satisfactory and recommend that it be accepted ___________________________________ Weidong Chen, Ph.D., Chair ___________________________________ Tobin L. Peever, Ph.D. ___________________________________ George J. Vandemark, Ph.D. ___________________________________ Lee A. Hadwiger, Ph.D. ___________________________________ Ming Xian, Ph.D. ii ACKNOWLEDGEMENTS I take this opportunity to thank my major advisor, Dr. Weidong Chen. I have learned a tremendous amount from him in framing hypothesis and critical thinking in science. He gave me every possible opportunity to attend conferences to present my research and interact with scientific communities. I would also like to thank my committee members Drs. Tobin L. Peever, George J. Va ndemark, Lee A. Hadwiger and Ming Xian for their open-door policy when questions arose and for giving me ideas and suggestions that helped develop this dissertation research. I am very fortunate to have such a nice group of committee members who are experts each in their own fields such as Systematics, Genetics, Molecular Biology and Chemistry. Without their expertise and helps the research presented in this dissertation could not have been carried out. I thank to Drs. Jeong-Jin Park and Chung-Min Park for long term collaboration during my doctoral study and being as good friends.