North American Fungi
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Schlechtendalia 37 (2020)
Schlechtendalia 38, 2021 Annotated list of taxonomic novelties published in “Fungi Europaei Exsiccati, Klotzschii Herbarium Vivum Mycologicum Continuato, Editio Nova, Series Secunda” Cent. 1 to 26 issued by G. L. Rabenhorst between 1859 and 1881 (second part – Cent. 11 to 20) Uwe BRAUN & Konstanze BENSCH Abstract: Braun, U. & Bensch, K. 2021: Annotated list of taxonomic novelties published in “Fungi Europaei Exsiccati, Klotzschii Herbarium Vivum Mycologicum Continuato, Editio Nova, Series Secunda” Cent. 1 to 26 issued by G. L. Rabenhorst between 1859 and 1881 (second part – Cent. 11 to 20). Schlechtendalia 38: 191–262. New taxa and new combinations published by G. L. Rabenhorst in “Fungi Europaei Exsiccati, Klotzschii Herbarium Vivum Mycologicum, Editio Nova, Series Secunda” Cent. 1 to 26 in the second half of the 19th century are listed and annotated. References, citations and the synonymy are corrected when necessary. The nomenclature of some taxa is discussed in more detail. The second part of this treatment comprises taxonomic novelties in Cent. 11 to 20. Zusammenfassung: Braun, U. & Bensch, K. 2021: Kommentierte Liste taxonomischer Neuheiten publiziert in „Fungi Europaei Exsiccati, Klotzschii Herbarium Vivum Mycologicum Continuato, Editio Nova, Series Secunda“ Cent. 1 bis 26, herausgegeben von G. L. Rabenhorst zwischen 1859 und 1881 (zweiter Teil, Cent. 11 bis 20). Schlechtendalia 38: 191–262. Neue Taxa und Kombinationen publiziert von G. L. Rabenhorst in “Klotzschii Herbarium Vivum Mycologicum, Editio Nova” Cent. 1 bis 26 in der zweiten Hälfte des 19. Jahrhunderts werden aufgelistet und annotiert. Referenzangaben, Zitate und die Synonymie werden korrigiert falls notwendig. Die Nomenklatur einiger Taxa wird detaillierter besprochen. Der zweite Teil dieser Bearbeitung umfasst Cent. -
University of California Santa Cruz Responding to An
UNIVERSITY OF CALIFORNIA SANTA CRUZ RESPONDING TO AN EMERGENT PLANT PEST-PATHOGEN COMPLEX ACROSS SOCIAL-ECOLOGICAL SCALES A dissertation submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in ENVIRONMENTAL STUDIES with an emphasis in ECOLOGY AND EVOLUTIONARY BIOLOGY by Shannon Colleen Lynch December 2020 The Dissertation of Shannon Colleen Lynch is approved: Professor Gregory S. Gilbert, chair Professor Stacy M. Philpott Professor Andrew Szasz Professor Ingrid M. Parker Quentin Williams Acting Vice Provost and Dean of Graduate Studies Copyright © by Shannon Colleen Lynch 2020 TABLE OF CONTENTS List of Tables iv List of Figures vii Abstract x Dedication xiii Acknowledgements xiv Chapter 1 – Introduction 1 References 10 Chapter 2 – Host Evolutionary Relationships Explain 12 Tree Mortality Caused by a Generalist Pest– Pathogen Complex References 38 Chapter 3 – Microbiome Variation Across a 66 Phylogeographic Range of Tree Hosts Affected by an Emergent Pest–Pathogen Complex References 110 Chapter 4 – On Collaborative Governance: Building Consensus on 180 Priorities to Manage Invasive Species Through Collective Action References 243 iii LIST OF TABLES Chapter 2 Table I Insect vectors and corresponding fungal pathogens causing 47 Fusarium dieback on tree hosts in California, Israel, and South Africa. Table II Phylogenetic signal for each host type measured by D statistic. 48 Table SI Native range and infested distribution of tree and shrub FD- 49 ISHB host species. Chapter 3 Table I Study site attributes. 124 Table II Mean and median richness of microbiota in wood samples 128 collected from FD-ISHB host trees. Table III Fungal endophyte-Fusarium in vitro interaction outcomes. -
A Metagenomic Approach to Understand Stand Failure in Bromus Tectorum
Brigham Young University BYU ScholarsArchive Theses and Dissertations 2019-06-01 A Metagenomic Approach to Understand Stand Failure in Bromus tectorum Nathan Joseph Ricks Brigham Young University Follow this and additional works at: https://scholarsarchive.byu.edu/etd BYU ScholarsArchive Citation Ricks, Nathan Joseph, "A Metagenomic Approach to Understand Stand Failure in Bromus tectorum" (2019). Theses and Dissertations. 8549. https://scholarsarchive.byu.edu/etd/8549 This Thesis is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. A Metagenomic Approach to Understand Stand Failure in Bromus tectorum Nathan Joseph Ricks A thesis submitted to the faculty of Brigham Young University in partial fulfillment of the requirements for the degree of Master of Science Craig Coleman, Chair John Chaston Susan Meyer Department of Plant and Wildlife Sciences Brigham Young University Copyright © 2019 Nathan Joseph Ricks All Rights Reserved ABSTACT A Metagenomic Approach to Understand Stand Failure in Bromus tectorum Nathan Joseph Ricks Department of Plant and Wildlife Sciences, BYU Master of Science Bromus tectorum (cheatgrass) is an invasive annual grass that has colonized large portions of the Intermountain west. Cheatgrass stand failures have been observed throughout the invaded region, the cause of which may be related to the presence of several species of pathogenic fungi in the soil or surface litter. In this study, metagenomics was used to better understand and compare the fungal communities between sites that have and have not experienced stand failure. -
Livro-Inpp.Pdf
GOVERNMENT OF BRAZIL President of Republic Michel Miguel Elias Temer Lulia Minister for Science, Technology, Innovation and Communications Gilberto Kassab MUSEU PARAENSE EMÍLIO GOELDI Director Nilson Gabas Júnior Research and Postgraduate Coordinator Ana Vilacy Moreira Galucio Communication and Extension Coordinator Maria Emilia Cruz Sales Coordinator of the National Research Institute of the Pantanal Maria de Lourdes Pinheiro Ruivo EDITORIAL BOARD Adriano Costa Quaresma (Instituto Nacional de Pesquisas da Amazônia) Carlos Ernesto G.Reynaud Schaefer (Universidade Federal de Viçosa) Fernando Zagury Vaz-de-Mello (Universidade Federal de Mato Grosso) Gilvan Ferreira da Silva (Embrapa Amazônia Ocidental) Spartaco Astolfi Filho (Universidade Federal do Amazonas) Victor Hugo Pereira Moutinho (Universidade Federal do Oeste Paraense) Wolfgang Johannes Junk (Max Planck Institutes) Coleção Adolpho Ducke Museu Paraense Emílio Goeldi Natural resources in wetlands: from Pantanal to Amazonia Marcos Antônio Soares Mário Augusto Gonçalves Jardim Editors Belém 2017 Editorial Project Iraneide Silva Editorial Production Iraneide Silva Angela Botelho Graphic Design and Electronic Publishing Andréa Pinheiro Photos Marcos Antônio Soares Review Iraneide Silva Marcos Antônio Soares Mário Augusto G.Jardim Print Graphic Santa Marta Dados Internacionais de Catalogação na Publicação (CIP) Natural resources in wetlands: from Pantanal to Amazonia / Marcos Antonio Soares, Mário Augusto Gonçalves Jardim. organizers. Belém : MPEG, 2017. 288 p.: il. (Coleção Adolpho Ducke) ISBN 978-85-61377-93-9 1. Natural resources – Brazil - Pantanal. 2. Amazonia. I. Soares, Marcos Antonio. II. Jardim, Mário Augusto Gonçalves. CDD 333.72098115 © Copyright por/by Museu Paraense Emílio Goeldi, 2017. Todos os direitos reservados. A reprodução não autorizada desta publicação, no todo ou em parte, constitui violação dos direitos autorais (Lei nº 9.610). -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
Resolving Cryptic Species Complexes in Diplodia
RESOLVING CRYPTIC SPECIES COMPLEXES IN DIPLODIA Joana Filipa de Sousa Ramos Reis Lopes Dissertação para obtenção do Grau de Mestre em Engenharia Agronómica - Biotecnologia e Melhoramento de Plantas Orientador: Doutor Alan John Lander Phillips Co-orientador: Doutora Maria Helena Mendes da Costa Ferreira Correia de Oliveira Júri: Presidente: Doutora Cristina Maria Moniz Simões de Oliveira, Professora Associada do Instituto Superior de Agronomia da Universidade Técnica de Lisboa. Vogais: Doutora Maria Helena Mendes da Costa Ferreira Correia de Oliveira, Professora Associada do Instituto Superior de Agronomia da Universidade Técnica de Lisboa; Doutor Alan John Lander Phillips, Investigador Principal da Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa; Doutora Maria Cecília Nunes Farinha Rego, Investigadora Auxiliar do Laboratório de Patologia Vegetal “Veríssimo de Almeida”. Lisboa, 2008 Aos meus pais. ii Acknowledgements Firstly, I would like to thank Dr. Alan Phillips to whom I had the privilege to work with, for the suggestion of the studied theme and the possibility to work in his project. For the scientific orientation in the present work, the teachings and advices and for the support and persistency in the achievement of a coherent and consistent piece of work; I would also like to thank Prof. Dr. Helena Oliveira for the support and constant availability and especially for her human character and kindness in the most stressful moments; To Eng. Cecília Rego for the interest, attention and encouragement; To Dr. Artur Alves -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Evolution of Lifestyles in Capnodiales
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 95: 381–414 (2020). Evolution of lifestyles in Capnodiales J. Abdollahzadeh1*, J.Z. Groenewald2, M.P.A. Coetzee3, M.J. Wingfield3, and P.W. Crous2,3,4* 1Department of Plant Protection, Agriculture Faculty, University of Kurdistan, P.O. Box 416, Sanandaj, Iran; 2Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, Utrecht, 3508 AD, the Netherlands; 3Department of Biochemistry, Genetics & Microbiology, Forestry & Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa; 4Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, Wageningen, 6708 PB, the Netherlands *Correspondence: J. Abdollahzadeh, [email protected]; P.W. Crous, [email protected] Abstract: The Capnodiales, which includes fungi known as the sooty moulds, represents the second largest order in Dothideomycetes, encompassing morphologically and ecologically diverse fungi with different lifestyles and modes of nutrition. They include saprobes, plant and human pathogens, mycoparasites, rock-inhabiting fungi (RIF), lichenised, epi-, ecto- and endophytes. The aim of this study was to elucidate the lifestyles and evolutionary patterns of the Capnodiales as well as to reconsider their phylogeny by including numerous new collections of sooty moulds, and using four nuclear loci, LSU, ITS, TEF-1α and RPB2. Based on the phylogenetic results, combined with morphology and ecology, Capnodiales s. lat. is shown to be polyphyletic, representing seven different orders. The sooty moulds are restricted to Capnodiales s. str., while Mycosphaerellales is resurrected, and five new orders including Cladosporiales, Comminutisporales, Neophaeothecales, Phaeothecales and Racodiales are introduced. Four families, three genera, 21 species and five combinations are introduced as new. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
EU Project Number 613678
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 7 - REPORT on Oranges and Mandarins – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Grousset F, Wistermann A, Steffen K, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Oranges and Mandarins – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/112o3f5b0c014 DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on ORANGES AND MANDARINS – Fruit pathway and Alert List 1. Introduction ............................................................................................................................................... 2 1.1 Background on oranges and mandarins ..................................................................................................... 2 1.2 Data on production and trade of orange and mandarin fruit ........................................................................ 5 1.3 Characteristics of the pathway ‘orange and mandarin fruit’ ....................................................................... -
Phylogenetic Lineages in the Botryosphaeriaceae
STUDIES IN MYCOLOGY 55: 235–253. 2006. Phylogenetic lineages in the Botryosphaeriaceae Pedro W. Crous1*, Bernard Slippers2, Michael J. Wingfield2, John Rheeder3, Walter F.O. Marasas3, Alan J.L. Philips4, Artur Alves5, Treena Burgess6, Paul Barber6 and Johannes Z. Groenewald1 1Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 2Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, South Africa; 3PROMEC Unit, Medical Research Council, P.O. Box 19070, 7505 Tygerberg, South Africa; 4Centro de Recursos Microbiológicos, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal; 5Centro de Biologia Celular, Departamento de Biologia, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; 6School of Biological Sciences & Biotechnology, Murdoch University, Murdoch 6150, WA, Australia *Correspondence: Pedro W. Crous, [email protected] Abstract: Botryosphaeria is a species-rich genus with a cosmopolitan distribution, commonly associated with dieback and cankers of woody plants. As many as 18 anamorph genera have been associated with Botryosphaeria, most of which have been reduced to synonymy under Diplodia (conidia mostly ovoid, pigmented, thick-walled), or Fusicoccum (conidia mostly fusoid, hyaline, thin-walled). However, there are numerous conidial anamorphs having morphological characteristics intermediate between Diplodia and Fusicoccum, and there are several records of species outside the Botryosphaeriaceae that have anamorphs apparently typical of Botryosphaeria s.str. Recent studies have also linked Botryosphaeria to species with pigmented, septate ascospores, and Dothiorella anamorphs, or Fusicoccum anamorphs with Dichomera synanamorphs. The aim of this study was to employ DNA sequence data of the 28S rDNA to resolve apparent lineages within the Botryosphaeriaceae. -
Distribution of <I>Alternaria</I> Species Among Sections. 2. Section <I>Alternaria</I>
ISSN (print) 0093-4666 © 2015. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/130.941 Volume 130, pp. 941–949 October–December 2015 Distribution of Alternaria species among sections. 2. Section Alternaria Philipp B. Gannibal Laboratory of Mycology and Phytopathology, All-Russian Institute of Plant Protection, Shosse Podbelskogo 3, Saint Petersburg, 196608, Russia Correspondence to: [email protected] Abstract — Among several groups of small-spored Alternaria species, A. sect. Alternaria (containing the generic type) has been found to be isolated, based on phylogenetic as well as morphological data. Molecular phylogenetic data confirm inclusion of twenty-one species in this section besides the type species. Examination of additional material, conforming to the morphological description for the section but not as yet phylogenetically characterized, allow confirmation of an additional 37 species. All 59 species are listed, and an emended description of Alternaria sect. Alternaria is presented. Key words — Alternaria alternata, A. herbiphorbicola, A. gomphrenae, Pseudoalternaria Introduction The genus Alternaria Nees is a large taxonomic group that comprises approximately 280 species (Simmons 2007). A series of large-scale works has attempted to resolve the phylogeny of Alternaria and other alternarioid hyphomycetes by employing more than ten different genomic loci (Pryor & Bigelow 2003; Hong et al. 2005; Runa et al. 2009; Lawrence et al. 2012, 2013, 2014; Woudenberg et al. 2013). Several well-supported phylogenetic lineages have been revealed within the alternarioid hyphomycetes, resulting in several taxonomic novelties. The genus Alternaria was divided into eight taxonomic sections by Lawrence et al. (2013). Presenting an alternative concept, Woudenberg et al.