Aspects of Bulblet Growth of Lily in Vitro
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LILIUM) PRODUCTION Faculty of Science, Department of Biology, University of Oulu
BIOTECHNOLOGICAL APPROACHES VELI-PEKKA PELKONEN IN LILY (LILIUM) PRODUCTION Faculty of Science, Department of Biology, University of Oulu OULU 2005 VELI-PEKKA PELKONEN BIOTECHNOLOGICAL APPROACHES IN LILY (LILIUM) PRODUCTION Academic Dissertation to be presented with the assent of the Faculty of Science, University of Oulu, for public discussion in Kuusamonsali (Auditorium YB210), Linnanmaa, on April 15th, 2005, at 12 noon OULUN YLIOPISTO, OULU 2005 Copyright © 2005 University of Oulu, 2005 Supervised by Professor Anja Hohtola Professor Hely Häggman Reviewed by Professor Anna Bach Professor Risto Tahvonen ISBN 951-42-7658-2 (nid.) ISBN 951-42-7659-0 (PDF) http://herkules.oulu.fi/isbn9514276590/ ISSN 0355-3191 http://herkules.oulu.fi/issn03553191/ OULU UNIVERSITY PRESS OULU 2005 Pelkonen, Veli-Pekka, Biotechnological approaches in lily (Lilium) production Faculty of Science, Department of Biology, University of Oulu, P.O.Box 3000, FIN-90014 University of Oulu, Finland 2005 Oulu, Finland Abstract Biotechnology has become a necessity, not only in research, but also in the culture and breeding of lilies. Various methods in tissue culture and molecular breeding have been applied to the production of commercially important lily species and cultivars. However, scientific research data of such species and varieties that have potential in the northern climate is scarce. In this work, different biotechnological methods were developed and used in the production and culture of a diversity of lily species belonging to different taxonomic groups. The aim was to test and develop further the existing methods in plant biotechnology for the developmental work and the production of novel hardy lily cultivars for northern climates. -
Evolutionary Events in Lilium (Including Nomocharis, Liliaceae
Molecular Phylogenetics and Evolution 68 (2013) 443–460 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Evolutionary events in Lilium (including Nomocharis, Liliaceae) are temporally correlated with orogenies of the Q–T plateau and the Hengduan Mountains ⇑ Yun-Dong Gao a,b, AJ Harris c, Song-Dong Zhou a, Xing-Jin He a, a Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Science, Sichuan University, Chengdu 610065, China b Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China c Department of Botany, Oklahoma State University, Oklahoma 74078-3013, USA article info abstract Article history: The Hengduan Mountains (H-D Mountains) in China flank the eastern edge of the Qinghai–Tibet Plateau Received 21 July 2012 (Q–T Plateau) and are a center of great temperate plant diversity. The geological history and complex Revised 24 April 2013 topography of these mountains may have prompted the in situ evolution of many diverse and narrowly Accepted 26 April 2013 endemic species. Despite the importance of the H-D Mountains to biodiversity, many uncertainties Available online 9 May 2013 remain regarding the timing and tempo of their uplift. One hypothesis is that the Q–T Plateau underwent a final, rapid phase of uplift 8–7 million years ago (Mya) and that the H-D Mountains orogeny was a sep- Keywords: arate event occurring 4–3 Mya. To evaluate this hypothesis, we performed phylogenetic, biogeographic, Hengduan Mountains divergence time dating, and diversification rate analyses of the horticulturally important genus Lilium, Lilium–Nomocharis complex Intercontinental dispersal including Nomocharis. -
Frequent Gene Flow Blurred Taxonomic Boundaries of Sections in Lilium L. (Liliaceae)
RESEARCH ARTICLE Frequent gene flow blurred taxonomic boundaries of sections in Lilium L. (Liliaceae) Xun Gong1☯, Kuo-Hsiang Hung2☯, Yu-Wei Ting3☯, Tsai-Wen Hsu4☯, Lenka Malikova3,5☯, Huyen Trang Tran3,6☯, Chao-Li Huang7*, Shih-Hui Liu8,9*, Tzen-Yuh Chiang3,10* 1 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China, 2 Graduate Institute of Bioresources, National Pingtung University of Science and Technology, Pingtung, Taiwan, 3 Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan, 4 Endemic Species Research Institute, Nantou, Taiwan, 5 Institute of Botany CAS, Třeboň, Czech Republic, 6 Institute of Natural Science Education, Vinh University, Vinh, Nghe An, Vietnam, 7 Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan, Taiwan, 8 Department of a1111111111 Biology, Saint Louis University, Saint Louis, Missouri, United States of America, 9 Missouri Botanical Garden, Saint Louis, Missouri, United States of America, 10 University Center for Bioscience and Biotechnology, a1111111111 National Cheng Kung University, Tainan, Taiwan a1111111111 a1111111111 ☯ These authors contributed equally to this work. a1111111111 * [email protected] (TYC); [email protected] (SHL); [email protected] (CLH) Abstract OPEN ACCESS Gene flow between species may last a long time in plants. Reticulation inevitably causes dif- Citation: Gong X, Hung K-H, Ting Y-W, Hsu T-W, ficulties in phylogenetic reconstruction. In this study, we looked into the genetic divergence Malikova L, Tran HT, et al. (2017) Frequent gene and phylogeny of 20 Lilium species based on multilocus analyses of 8 genes of chloroplast flow blurred taxonomic boundaries of sections in DNA (cpDNA), the internally transcribed nuclear ribosomal DNA (nrITS) spacer and 20 loci Lilium L. -
BASKİL TERS LALESİ (Fritillaria Baskilensis Behcet)'NİN DOKU KÜLTÜRÜYLE ÇOĞALTILMASI Tuba SARİ Moleküler Biyoloji V
BASKİL TERS LALESİ (Fritillaria baskilensis Behcet)’NİN DOKU KÜLTÜRÜYLE ÇOĞALTILMASI Tuba SARİ Yüksek Lisans Tezi Moleküler Biyoloji ve Genetik Anabilim Dalı Danışman: Prof. Dr. Ömer MUNZUROĞLU AĞUSTOS-2016 ÖZET Yüksek Lisans BASKİL TERS LALESİ (Fritillaria baskilensis Behcet)’NİN DOKU KÜLTÜRÜYLE ÇOĞALTILMASI Tuba SARİ Fırat Üniversitesi Fen Bilimleri Enstitüsü Moleküler Biyoloji Anabilim Dalı Danışman: Prof. Dr. Ömer MUNZUROĞLU 2016 Bu çalışmada ülkemiz için endemik olan ve türü tehlike altında olduğu bildirilen Baskil Ters Lalesi (Fritillaria baskilensis Behçet)’nin in vitro çoğaltımı amaçlandı. Eksplantlar bitkinin soğan, açmamış çiçek tepalleri ve çiçek saplarından elde edildi. Deneylerde MS (vitaminli) temel besi ortamı, %3 ve %6 sükroz ile NAA, IAA ve BA gibi bitki büyüme düzenleyicileri (PGR) kullanıldı. Yüzey sterilizasyonu işlemleri etil alkol ve sodyum hipoklorit (NaOCl) kullanılarak yapıldı. Eksplantlar 20±1 oC’de gelişmeye bırakıldı. 8 saat karanlık ve 16 saat ışık fotoperiyot uygulandı. İlk 30 günlük inkübasyon sonunda, canlı kalan (%85,94) soğan eksplantlarının %38.4’ünde kallus oluşumu, % 8.6 ‘sında soğancık oluşumu görüldü.120 günlük inkübasyon süresinin sonunda en iyi sonuç %3 sükroz içeren yüksek sitokininli ortam (1 BA + 0.6 NAA + 0.4 IAA)’da alındı. Bu ortamda soğan eksplantlarının % 96.42’sinde direkt veya endirekt organogenez, geriye kalan % 3.57’sinde sadece kallus oluşumu görüldü. PGR içermeyen temel besi ortamında sükroz bulunmadığı zaman %48.13 oranında kallus oluşumu görülmesine rağmen organogenez gerçekleşmedi. %3 sükroz oranı % 6 sükroza göre kallus + sürgün oluşumunda %147.2, kallus + soğancık oluşumunda %153.3 oranlarında daha fazla etkili oldu. %3 sükroz ve yüksek sitokinin (1 mg/L BA + 0.6 mg/L NAA + 0.4 mg/L IAA) birlikte bulunduğu zaman toplam III organogenez arttı. -
Morphological and Ecological Divergence of Lilium And
Gao et al. BMC Evolutionary Biology (2015) 15:147 DOI 10.1186/s12862-015-0405-2 RESEARCH ARTICLE Open Access Morphological and ecological divergence of Lilium and Nomocharis within the Hengduan Mountains and Qinghai-Tibetan Plateau may result from habitat specialization and hybridization Yun-Dong Gao1,2*, AJ Harris3 and Xing-Jin He1* Abstract Background: Several previous studies have shown that some morphologically distinctive, small genera of vascular plants that are endemic to the Qinghai-Tibetan Plateau and adjacent Hengduan Mountains appear to have unexpected and complex phylogenetic relationships with their putative sisters, which are typically more widespread and more species rich. In particular, the endemic genera may form one or more poorly resolved paraphyletic clades within the sister group despite distinctive morphology. Plausible explanations for this evolutionary and biogeographic pattern include extreme habitat specialization and hybridization. One genus consistent with this pattern is Nomocharis Franchet. Nomocharis comprises 7–15 species bearing showy-flowers that are endemic to the H-D Mountains. Nomocharis has long been treated as sister to Lilium L., which is comprised of more than 120 species distributed throughout the temperate Northern Hemisphere. Although Nomocharis appears morphologically distinctive, recent molecular studies have shown that it is nested within Lilium, from which is exhibits very little sequence divergence. In this study, we have used a dated molecular phylogenetic framework to gain insight into the timing of morphological and ecological divergence in Lilium-Nomocharis and to preliminarily explore possible hybridization events. We accomplished our objectives using dated phylogenies reconstructed from nuclear internal transcribed spacers (ITS) and six chloroplast markers. -
Transposable Elements and Genome Size Variations in Plants
eISSN 2234-0742 Genomics Inform 2014;12(3):87-97 G&I Genomics & Informatics http://dx.doi.org/10.5808/GI.2014.12.3.87 REVIEW ARTICLE Transposable Elements and Genome Size Variations in Plants Sung-Il Lee, Nam-Soo Kim* Department of Molecular Bioscience, Kangwon National University, Chuncheon 200-701, Korea Although the number of protein-coding genes is not highly variable between plant taxa, the DNA content in their genomes is highly variable, by as much as 2,056-fold from a 1C amount of 0.0648 pg to 132.5 pg. The mean 1C-value in plants is 2.4 pg, and genome size expansion/contraction is lineage-specific in plant taxonomy. Transposable element fractions in plant genomes are also variable, as low as ~3% in small genomes and as high as ~85% in large genomes, indicating that genome size is a linear function of transposable element content. Of the 2 classes of transposable elements, the dynamics of class 1 long terminal repeat (LTR) retrotransposons is a major contributor to the 1C value differences among plants. The activity of LTR retrotransposons is under the control of epigenetic suppressing mechanisms. Also, genome-purging mechanisms have been adopted to counter-balance the genome size amplification. With a wealth of information on whole-genome sequences in plant genomes, it was revealed that several genome-purging mechanisms have been employed, depending on plant taxa. Two genera, Lilium and Fritillaria, are known to have large genomes in angiosperms. There were twice times of concerted genome size evolutions in the family Liliaceae during the divergence of the current genera in Liliaceae. -
Studies in the Genus Fritillaria L. (Liliaceae)
Studies in the genus Fritillaria L. (Liliaceae) Peter D. Day, BSc. October 2017 Submitted in partial fulfilment of the requirements of the Degree of Doctor of Philosophy Supervisors: Prof. Andrew R. Leitch Dr Ilia J. Leitch Statement of Originality I, Peter Donal Day, confirm that the research included within this thesis is my own work or that where it has been carried out in collaboration with, or supported by others, that this is duly acknowledged below and my contribution indicated. Previously published material is also acknowledged below. I attest that I have exercised reasonable care to ensure that the work is original, and does not to the best of my knowledge break any UK law, infringe any third party’s copyright or other Intellectual Property Right, or contain any confidential material. I accept that the College has the right to use plagiarism detection software to check the electronic version of the thesis. I confirm that this thesis has not been previously submitted for the award of a degree by this or any other university. The copyright of this thesis rests with the author and no quotation from it or information derived from it may be published without the prior written consent of the author. Signature: Date: October 31st 2017 Details of collaboration and publications. Chapter 2 is published in Day et al. (2014): Day PD, Berger M, Hill L, Fay MF, Leitch AR, Leitch IJ, Kelly LJ (2014). Evolutionary relationships in the medicinally important genus Fritillaria L. (Liliaceae). Molecular Phylogenetics and Evolution, 80: 11-19. Martyn -
Lilium Martagon L
Doctoral Thesis No. 2005:19 Faculty of Landscape Planning, Horticulture and Agricultural Science Lilium martagon L. Krolliljans introduktion och tidiga historia i Sverige intill år 1795 - i en europeisk liljekontext Kjell Lundquist Lilium martagon L. Krolliljans introduktion och tidiga historia i Sverige intill år 1795 - i en europeisk liljekontext Considerate lilia agri quomodo crescunt Se på ängens liljor, hur de växer Matt. 6:28 Imprimis vero magno in precio apud me sunt eruntque bulbi isti tui; Nam non secus ut bosphorus reliqua astra luminis sui splendore vincit [?]: ita hi bulbi floris varietate, colore, nitore, elegantia, … reliquas. Särskilt uppskattar jag dina [Clusius] lökar. Ty på samma sätt som bosphorus överträffar andra stjärnor med sin glans, så överträffar dessa lökar andra genom blommornas skiftningar, färg, glans, elegans. Henrik Høyer, 17 augusti 1597 Ensam i sin dolda växt fann han gemenskap med allt växande. Dag Hammarskjöld, 1959 Lilium martagon L. Krolliljans introduktion och tidiga historia i Sverige intill år 1795 - i en europeisk liljekontext Kjell Lundquist Fakulteten för landskapsplanering, trädgårds- och jordbruksvetenskap Institutionen för landskapsplanering Alnarp Alnarp Doctoral thesis Swedish University of Agricultural Sciences Alnarp 2005 Acta Universitatis Agriculturae Sueciae ) 2005:19 Omslagsbilden: ”Martagon”, krollilja (Lilium martagon) ur Codex Bellunensis, en venetiansk handskrift från ca 1415 (Add. MS. 41623, f. 66v. By permission of British Library, London). Citaten: Bibel-citatet är hämtat från Vulgata (latinsk bibelöversättning från 400-talet), den svenska över- sättningen från Bibel 2000. Høyer-citatet är hämtat från brev från Henrik Høyer till Carolus Clusius, Leiden, Universiteits- bibliotheek Leiden, Vul 101. Översättning: Urban Örneholm. Hammarskjöld-citatet är hämtat från Dag Hammarskjöld 1966 [1963]. -
Fritillaria Minima RIX)’NİN DOKU KÜLTÜRÜYLE ÇOĞALTILMASI
T.C FIRAT ÜNİVERSİTESİ FEN BİLİMLERİ ENSTİTÜSÜ SARI KAR LALESİ (Fritillaria minima RIX)’NİN DOKU KÜLTÜRÜYLE ÇOĞALTILMASI Ayşegül ÇELİK Yüksek Lisans Tezi Anabilim Dalı: Biyomühendislik Danışman: Prof. Dr. Ömer MUNZUROĞLU ELAZIĞ-2017 ÖNSÖZ Bu tez konusu TÜBİTAK tarafından 2210-C programı ile desteklenmişir. Deneysel çalışmalar FÜBAP M.F.15.38 nolu proje ile yürütülmüştür. Yüksek Lisans tez çalışma konumun belirlenmesi, çalışma materyallerinin temini, laboratuvar çalışmalarımın yürütülmesi ve tezimin yazılması aşamasında her türlü katkılarını esirgemeyen saygıdeğer hocam Sayın Prof. Dr. Ömer MUNZUROĞLU’na teşekkürlerimi sunmayı bir borç bilirim. Ayrıca Tez çalışmam boyunca özellikle çalışma materyali temininde yardımlarını esirgemeyen Bitlis Eren Üniversitesi Fen Edebiyat Fakültesi Biyoloji Bölümü öğretim üyelerinden hocam Sayın Yrd. Doç. Dr. Murat KURŞAT’a teşekkür ederim. Çalışmalarım boyunca desteklerini hiç esirgemeyen değerli arkadaşlarım Kübra KOÇAK ve Yunus Emre ÖZ’e teşekkür ederim. Ayrıca, hayatımın ve eğitimimin her aşamasında maddi manevi destekleriyle beni hiçbir zaman yalnız bırakmayan aileme de sonsuz teşekkür ederim. Not: Tezimi Enstitüye teslim ettikten sonra sayın hocam Ömer MUNZUROĞLU vefat ettiğinden dolayı tez savunma sınavına katılamamıştır. Ayşegül ÇELİK ELAZIĞ-2017 II İÇİNDEKİLuıER Sayfa No ÖNSÖZ ....................................................................................................................... II İÇİNDEKİLER ...................................................................................................... -
Lilium Yapingense (Liliaceae), a New Species from Yunnan, China, and Its Systematic Significance Relative to Nomocharis
Ann. Bot. Fennici 50: 187–194 ISSN 0003-3847 (print) ISSN 1797-2442 (online) Helsinki 28 May 2013 © Finnish Zoological and Botanical Publishing Board 2013 Lilium yapingense (Liliaceae), a new species from Yunnan, China, and its systematic significance relative to Nomocharis Yun-Dong Gao1,2, Song-Dong Zhou1 & Xing-Jin He1,* 1) Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Science, Sichuan University, Chengdu 610064, P. R. China (*corresponding author’s email: xjhe@ scu.edu.cn) 2) Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China Received 26 Nov. 2012, final version received 18 Feb. 2013, accepted 21 Mar. 2013 Gao, Y. D., Zhou, S. D. & He, X. J. 2013: Lilium yapingense (Liliaceae), a new species from Yunnan, China, and its systematic significance relative to Nomocharis. — Ann. Bot. Fennici 50: 187–194. We describe and illustrate Lilium yapingense sp. nova (Liliaceae) and show its position within the Lilium–Nomocharis complex (Liliaceae). It is similar in appearance to L. nanum but differs by (1) having no spots on the tepal bases, instead possessing sym- metric stripes; (2) nectaries lacking fimbriate projections on the surfaces, but having two dark grooves; and (3) an orange-colored instead of a white bulb. Phylogenetic analyses using nuclear ITS showed that L. yapingense merits specific rank and that it is more closely related to Nomocharis than to Lilium. However, the morphological synapomorphies thought to distinguish Nomocharis from Lilium are absent from the new species. The morphology and phylogeny of L. yapingense support previous stud- ies, which show that Nomocharis and Lilium have intergrading morphologies and that Lilium is paraphyletic with respect to Nomocharis. -
MECHANISMS of VEGETATIVE PROPAGATION in BULBS a Molecular Approach
MECHANISMS OF VEGETATIVE PROPAGATION IN BULBS a molecular approach Natalia M. Moreno-Pachón Thesis committee Promotor Prof. Dr R.G.H. Immink Special professor Physiology of Flower Bulbs Wageningen University & Research Co-promotor Dr H.W.M. Hilhorst Associate Professor, Laboratory of Plant Physiology Wageningen University & Research Other members Prof. Dr B.J.G. Scheres, Wageningen University & Research Prof. Dr R. Offringa, University of Leiden Dr C. Philipsen, Dummen Orange, De Lier Dr P.F.P. Arens, Wageningen University & Research This research was conducted under the auspices of the Graduate School Experimental Plant Sciences MECHANISMS OF VEGETATIVE PROPAGATION IN BULBS a molecular approach Natalia M. Moreno-Pachón Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus, Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Thursday 12 October 2017 at 11 a.m. in the Aula. Natalia M. Moreno-Pachon MECHANISMS OF VEGETATIVE PROPAGATION IN BULBS a molecular approach 178 pages PhD thesis, Wageningen University, Wageningen, the Netherlands (2017) With references, with summary in English ISBN: 978-94-6343-701-1 DOI: https://doi.org/10.18174/423177 TABLE OF CONTENTS CHAPTER 1 General introduction.......................................................................................................... 7 CHAPTER 2 Transfer of knowledge about flowering and vegetative propagation from model species to bulbous plants ................................................................................................................. 19 CHAPTER 3 Elucidating and mining the Tulipa and Lilium transcriptomes .............................................. 37 CHAPTER 4 Role of Tulipa gesneriana TEOSINTE BRANCHED 1 (TgTB1) in the control of axillary bud outgrowth in bulbs ..........................................................................................................................