Cell Autophagy: Mechanism and Role in B-Cell Dysfunction
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												  Autophagy Controls Centrosome Numberwww.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 9), pp: 14277-14278 Editorial: Autophagy and Cell Death Autophagy controls centrosome number Shinya Honda and Shigeomi Shimizu It is believed that the number of centrosomes in a that in normal cells, and (4) silencing Cep63 decreased cell is tightly regulated by the degradation of centrosomal the number of centrosomes in autophagy-deficient cells. proteins via the ubiquitin–proteasome protein degradation From these findings, we concluded that Cep63 dots are the system. However, we recently demonstrated that direct substrates of autophagy and multiple centrosomes autophagy also participates in the regulation of centrosome are generated from the excess Cep63 dots in autophagy- number. deficient cells. The centrosome is the major component of the Consistent with these findings, in autophagy- microtubule organizing center of mammalian cells, deficient cells, most Cep63 dots directly bound to p62, and plays an essential role in chromosome segregation an adaptor or cargo receptor for autophagic degradation. during cell division. Centrosome number is tightly These p62-associated Cep63 dots were not become mature regulated during the cell cycle: G1 cells have one mature centrosomes, whereas some Cep63 dots become mature centrosome containing a pair of centrioles. Centriole centrosomes by their interaction with Cep152, instead of replication occurs during the S phase, and each centriole p62. Cep152 is the first protein to interact with Cep63 in duplicates to produce two daughter centrioles, to generate the initial step of centriole duplication (Figure 1). two centrosomes in the G2–M phase. If cells have more Our data indicated that Cep63 dots are continuously than three centrosomes during metaphase, this causes generated and rapidly degraded by autophagy.
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												  Autophagy Regulation by RNA DecayOn the edge of degradation: Autophagy regulation by RNA decay Elizabeth Delorme-Axford1 and Daniel J. Klionsky1# From the 1Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA # Correspondence to: Daniel J. Klionsky; University of Michigan; Life Sciences Institute; Rm. 6036; 210 Washtenaw Ave.; Ann Arbor, Michigan 48109-2216 USA; Email: [email protected] Keywords: Dcp2, DDX6, Dhh1, mRNA decay, RNA degradation, vacuole, Xrn1/XRN1, yeast Abbreviations: ATG, autophagy-related; CPA, cleavage and polyadenylation; Cvt, cytoplasm- to-vacuole targeting; GABARAP, GABA type A receptor-associated protein; MAP1LC3/ LC3, microtubule associated protein 1 light chain 3; miRNA, microRNA; mRNA, messenger RNA; MTOR, mechanistic target of rapamycin kinase; NMD, nonsense-mediated decay; qRT-PCR, quantitative real-time PCR; SG, stress granule; siRNA, small interfering RNA; TOR, target of rapamycin; TORC1, TOR complex 1; Ubl, ubiquitin-like; UTR, untranslated region This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1002/wrna.1522 1 This article is protected by copyright. All rights reserved. Running title: Autophagy regulation by RNA decay Abstract Cells must dynamically adapt to altered environmental conditions, particularly during times of stress, to ensure their ability to function effectively and survive. The macroautophagy/autophagy pathway is highly conserved across eukaryotic cells and promotes cell survival during stressful conditions. In general, basal autophagy occurs at a low level to sustain cellular homeostasis and metabolism.
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												  Autophagy: from Basic Science to Clinical Applicationnature publishing group REVIEW See COMMENTARY page XX Autophagy: from basic science to clinical application J Va n L i m b e r g e n 1 , 2 , 3 , C S t e v e n s 4 , E R N i m m o 1 , D C W i l s o n 2 , 3 a n d J S a t s a n g i 1 Autophagy is a cellular pathway involved in protein and organelle degradation, which is likely to represent an innate adaptation to starvation. In times of nutrient deficiency, the cell can self-digest and recycle some nonessential components through nonselective autophagy, thus sustaining minimal growth requirements until a food source becomes available. Over recent years, autophagy has been implicated in an increasing number of clinical scenarios, notably infectious diseases, cancer, neurodegenerative diseases, and autoimmunity. The recent identification of the importance of autophagy genes in the genetic susceptibility to Crohn ’ s disease suggests that a selective autophagic response may play a crucial role in the pathogenesis of common complex immune-mediated diseases. In this review, we discuss the autophagic mechanisms, their molecular regulation, and summarize their clinical relevance. This progress has led to great interest in the therapeutic potential of manipulation of both selective and nonselective autophagy in established disease. INTRODUCTION The ability to adapt to environmental change is essential for sur- Autophagy encompasses several distinct processes involving vival. This is true for the organism as a whole and for individual the delivery of portions of the cytoplasm to the lysosome for cells alike.
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												  Neurogenic Decisions Require a Cell Cycle Independent Function of TheRESEARCH ARTICLE Neurogenic decisions require a cell cycle independent function of the CDC25B phosphatase Fre´ de´ ric Bonnet1†, Angie Molina1†, Me´ lanie Roussat1, Manon Azais2, Sophie Bel-Vialar1, Jacques Gautrais2, Fabienne Pituello1*, Eric Agius1* 1Centre de Biologie du De´veloppement, Centre de Biologie Inte´grative, Universite´ de Toulouse, CNRS, UPS, Toulouse, France; 2Centre de Recherches sur la Cognition Animale, Centre de Biologie Inte´grative., Universite´ de Toulouse, CNRS, UPS, Toulouse, France Abstract A fundamental issue in developmental biology and in organ homeostasis is understanding the molecular mechanisms governing the balance between stem cell maintenance and differentiation into a specific lineage. Accumulating data suggest that cell cycle dynamics play a major role in the regulation of this balance. Here we show that the G2/M cell cycle regulator CDC25B phosphatase is required in mammals to finely tune neuronal production in the neural tube. We show that in chick neural progenitors, CDC25B activity favors fast nuclei departure from the apical surface in early G1, stimulates neurogenic divisions and promotes neuronal differentiation. We design a mathematical model showing that within a limited period of time, cell cycle length modifications cannot account for changes in the ratio of the mode of division. Using a CDC25B point mutation that cannot interact with CDK, we show that part of CDC25B activity is independent *For correspondence: of its action on the cell cycle. [email protected] (FP); [email protected] (EA) †These authors contributed equally to this work Introduction In multicellular organisms, managing the development, homeostasis and regeneration of tissues Competing interests: The requires the tight control of self-renewal and differentiation of stem/progenitor cells.
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												  Parameters of Starch Granule Genesis in Chloroplasts of Arabidopsis ThalianaMathematisch-Naturwissenschaftliche Fakultät Irina Malinova | Hadeel M. Qasim | Henrike Brust | Joerg Fettke Parameters of Starch Granule Genesis in Chloroplasts of Arabidopsis thaliana Suggested citation referring to the original publication: Frontiers in Plant Science 9 (2018) Art, 761 DOI http://dx.doi.org/10.3389/fpls.2018.00761 ISSN (online) 1664-462X Postprint archived at the Institutional Repository of the Potsdam University in: Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe ; 478 ISSN 1866-8372 http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-419295 fpls-09-00761 June 3, 2018 Time: 11:48 # 1 MINI REVIEW published: 05 June 2018 doi: 10.3389/fpls.2018.00761 Parameters of Starch Granule Genesis in Chloroplasts of Arabidopsis thaliana Irina Malinova†, Hadeel M. Qasim, Henrike Brust† and Joerg Fettke* Biopolymer Analytics, University of Potsdam, Potsdam, Germany Starch is the primary storage carbohydrate in most photosynthetic organisms and allows the accumulation of carbon and energy in form of an insoluble and semi-crystalline particle. In the last decades large progress, especially in the model plant Arabidopsis thaliana, was made in understanding the structure and metabolism of starch and its conjunction. The process underlying the initiation of starch granules remains obscure, Edited by: although this is a fundamental process and seems to be strongly regulated, as in Yasunori Nakamura, Akita Prefectural University, Japan Arabidopsis leaves the starch granule number per chloroplast is fixed with 5-7. Several Reviewed by: single, double, and triple mutants were reported in the last years that showed massively Christophe D’Hulst, alterations in the starch granule number per chloroplast and allowed further insights in Lille University of Science and Technology, France this important process.
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												  PEX5 Regulates Autophagy Via the Mtorc1-TFEB Axis During StarvationEun et al. Experimental & Molecular Medicine (2018) 50:4 DOI 10.1038/s12276-017-0007-8 Experimental & Molecular Medicine ARTICLE Open Access PEX5 regulates autophagy via the mTORC1-TFEB axis during starvation So Young Eun1,JoonNoLee2,In-KooNam2, Zhi-qiang Liu1,Hong-SeobSo 1, Seong-Kyu Choe1 and RaeKil Park2 Abstract Defects in the PEX5 gene impair the import of peroxisomal matrix proteins, leading to nonfunctional peroxisomes and other associated pathological defects such as Zellweger syndrome. Although PEX5 regulates autophagy process in a stress condition, the mechanisms controlling autophagy by PEX5 under nutrient deprivation are largely unknown. Herein, we show a novel function of PEX5 in the regulation of autophagy via Transcription Factor EB (TFEB). Under serum-starved conditions, when PEX5 is depleted, the mammalian target of rapamycin (mTORC1) inhibitor TSC2 is downregulated, which results in increased phosphorylation of the mTORC1 substrates, including 70S6K, S6K, and 4E- BP-1. mTORC1 activation further suppresses the nuclear localization of TFEB, as indicated by decreased mRNA levels of TFEB, LIPA, and LAMP1. Interestingly, peroxisomal mRNA and protein levels are also reduced by TFEB inactivation, indicating that TFEB might control peroxisome biogenesis at a transcriptional level. Conversely, pharmacological inhibition of mTOR resulting from PEX5 depletion during nutrient starvation activates TFEB by promoting nuclear localization of the protein. In addition, mTORC1 inhibition recovers the damaged-peroxisome biogenesis. These data suggest that PEX5 may be a critical regulator of lysosomal gene expression and autophagy through the mTOR-TFEB- autophagy axis under nutrient deprivation. 1234567890():,; 1234567890():,; Introduction Mitochondrial antiviral-signaling protein (MAVS) func- Peroxisome is an essential cellular organelle for per- tions as an antiviral signaling platform to induce the forming various metabolic activities, including oxidation interferon-independent signaling pathways4.
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												  Autophagy of an Amyloid-Like Translational Repressor Regulates Meiotic ExitShort Article Autophagy of an Amyloid-like Translational Repressor Regulates Meiotic Exit Highlights Authors d Autophagy is required for meiotic exit Fei Wang, Rudian Zhang, Wenzhi Feng, ..., Jiajia Li, d Autophagy prevents additional rounds of chromosome Vladimir Denic, Soni Lacefield segregation after meiosis II Correspondence d Autophagy degrades the amyloid-like translational repressor Rim4 in meiosis II [email protected] (F.W.), [email protected] (V.D.), [email protected] (S.L.) d Inhibition of autophagy leads to aberrant persistence of meiotic regulators In Brief Wang et al. report that autophagy promotes meiotic termination by degrading Rim4, an amyloid-like translational repressor whose timed clearance in meiosis II regulates protein production from its mRNA targets. In the absence of autophagy, cells fail to exit meiosis and undergo additional rounds of chromosome segregation after meiosis II. Wang et al., 2020, Developmental Cell 52, 141–151 January 27, 2020 ª 2019 Elsevier Inc. https://doi.org/10.1016/j.devcel.2019.12.017 Developmental Cell Short Article Autophagy of an Amyloid-like Translational Repressor Regulates Meiotic Exit Fei Wang,1,* Rudian Zhang,1 Wenzhi Feng,1 Dai Tsuchiya,2,4 Olivia Ballew,2 Jiajia Li,1 Vladimir Denic,3,* and Soni Lacefield2,5,* 1Department of Internal Medicine, Center for Autophagy Research, UT Southwestern Medical Center, Dallas, TX, USA 2Department of Biology, Indiana University, Bloomington, IN, USA 3Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA 4Present address: Stowers Institute for Medical Research, Kansas City, MO, USA 5Lead Contact *Correspondence: [email protected] (F.W.), [email protected] (V.D.), [email protected] (S.L.) https://doi.org/10.1016/j.devcel.2019.12.017 SUMMARY events during different stages of sexual reproduction and early stages of development (Yin et al., 2016).
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												  Resume of Kejin HuCURRIULUM VITAE Of Kejin Hu PERSONAL INFORMATION Name: Kejin HU Visa status: USA citizen Language(s): English, Chinese Home city: Vestavia Hills, AL, 35226 RANK/TITLE, Assistant Professor Department: Biochemistry and Molecular Genetics Division: UAB Stem Cell Institute Business Address: SHEL 705, 1825 University Boulevard, Birmingham, AL, 35294 Phone: 205-934-4700 (office); 205-876-8693 (home); 205-703-6688 (cell) Fax: 205-975-3335 MEMBERSHIP: ISSCR (international Society for Stem Cell Research), since 2011 Member of Genetics Society of America (GSA, since 2006) EDUCATIONS June, 1999 to May, 2003, PhD, in marine molecular biology at the Department of Zoology, The University of Hong Kong, Hong Kong, China. July, 1995-October, 1997, MPhil, in fungal biochemistry/microbiology in the Hong Kong Polytechnic University. September, 1981-July, 1985, BSc in botany/agronomy at The Central China (Huazhong) Agricultural University, Wuhan, China. TEACHING EXPERIENCE: Advanced Stem Cell/Regenerative medicine, GBSC 709, Since 2014 SCIENTIFIC ACTIVITIES Ad hoc reviewer for the following journals: 1) Stem Cells; 2) Stem Cells and Development; 3) Stem Cell International; 4) Human Immunology; 5) Molecular Biotechnology; 6) Comparative Biochemistry and Physiology; 7) Journal of Heredity; 8) Scientific Reports; 9) Cellular Reprogramming; 10) Cell and Tissue Research; 11) Science Bulletin; 12) Reproduction, Fertility and Development. 1 Grant Reviewer for 1) Medical Research Council (MRC) of the United Kingdom (remote review, 2015); 2) New York Stem Cell Science (panel meeting from 09/28-09/30, 2016); 3) UAB internal grants SCIENTIFIC/ACADEMIC EXPERIENCE 2011 to present, Assistant Professor, Department of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL September, 2007 to July, 2011, Research Associate in human iPSC reprogramming and human pluripotent stem cell biology, and their differentiation into blood lineage, Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI.
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												  Centrosome Positioning in Vertebrate DevelopmentCommentary 4951 Centrosome positioning in vertebrate development Nan Tang1,2,*,` and Wallace F. Marshall2,` 1Department of Anatomy, Cardiovascular Research Institute, The University of California, San Francisco, USA 2Department Biochemistry and Biophysics, The University of California, San Francisco, USA *Present address: National Institute of Biological Science, Beijing, China `Authors for correspondence ([email protected]; [email protected]) Journal of Cell Science 125, 4951–4961 ß 2012. Published by The Company of Biologists Ltd doi: 10.1242/jcs.038083 Summary The centrosome, a major organizer of microtubules, has important functions in regulating cell shape, polarity, cilia formation and intracellular transport as well as the position of cellular structures, including the mitotic spindle. By means of these activities, centrosomes have important roles during animal development by regulating polarized cell behaviors, such as cell migration or neurite outgrowth, as well as mitotic spindle orientation. In recent years, the pace of discovery regarding the structure and composition of centrosomes has continuously accelerated. At the same time, functional studies have revealed the importance of centrosomes in controlling both morphogenesis and cell fate decision during tissue and organ development. Here, we review examples of centrosome and centriole positioning with a particular emphasis on vertebrate developmental systems, and discuss the roles of centrosome positioning, the cues that determine positioning and the mechanisms by which centrosomes respond to these cues. The studies reviewed here suggest that centrosome functions extend to the development of tissues and organs in vertebrates. Key words: Centrosome, Development, Mitotic spindle orientation Introduction radiating out to the cell cortex (Fig. 2A). In some cases, the The centrosome of animal cells (Fig.
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												  Autophagy in the Endocrine GlandsA WECKMAN and others Autophagy in the endocrine 52:2 R151–R163 Review glands Autophagy in the endocrine glands Andrea Weckman, Antonio Di Ieva, Fabio Rotondo1, Luis V Syro2, Leon D Ortiz3, Kalman Kovacs1 and Michael D Cusimano Division of Neurosurgery, Department of Surgery, St Michael’s Hospital, University of Toronto, Toronto, Ontario, Canada Correspondence 1Division of Pathology, Department of Laboratory Medicine, St Michael’s Hospital, University of Toronto, Toronto, should be addressed Ontario, Canada to A Di Ieva 2Department of Neurosurgery, Hospital Pablo Tobon Uribe and Clinica Medellin, Medellin, Colombia Email 3Division of Neurooncology, Instituto de Cancerologia, Clinic Las Americas, Medellin, Colombia [email protected] Abstract Autophagy is an important cellular process involving the degradation of intracellular Key Words components. Its regulation is complex and while there are many methods available, there is " autophagy currently no single effective way of detecting and monitoring autophagy. It has several " endocrine glands cellular functions that are conserved throughout the body, as well as a variety of different " crinophagy physiological roles depending on the context of its occurrence in the body. Autophagy is also " endocrine diseases involved in the pathology of a wide range of diseases. Within the endocrine system, autophagy has both its traditional conserved functions and specific functions. In the endocrine glands, autophagy plays a critical role in controlling intracellular hormone levels. In peptide-secreting cells of glands such as the pituitary gland, crinophagy, a specific form of autophagy, targets the secretory granules to control the levels of stored hormone. In steroid-secreting cells of glands such as the testes and adrenal gland, autophagy targets the steroid-producing organelles.
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												  ER-Phagy at a Glance Paolo Grumati1,*, Ivan Dikic1,2,‡ and Alexandra Stolz2,*© 2018. Published by The Company of Biologists Ltd | Journal of Cell Science (2018) 131, jcs217364. doi:10.1242/jcs.217364 CELL SCIENCE AT A GLANCE ER-phagy at a glance Paolo Grumati1,*, Ivan Dikic1,2,‡ and Alexandra Stolz2,* ABSTRACT function in response to ER stress signals. This task sharing reflects Selective autophagy represents the major quality control mechanism the complexity of the ER in terms of biological functions and that ensures proper turnover of exhausted or harmful organelles, morphology. In this Cell Science at a Glance article and the among them the endoplasmic reticulum (ER), which is fragmented accompanying poster, we summarize the most recent findings and delivered to the lysosome for degradation via a specific type of about ER-phagy in yeast and in mammalian cells. autophagy called ER-phagy. The recent discovery of ER-resident KEY WORDS: Autophagy, CCPG1, FAM134B, RTN3, SEC62, proteins that bind to mammalian Atg8 proteins has revealed that the Endoplasmic reticulum selective elimination of ER involves different receptors that are specific for different ER subdomains or ER stresses. FAM134B (also known as RETREG1) and RTN3 are reticulon-type proteins that are Introduction able to remodel the ER network and ensure the basal membrane The endoplasmic reticulum (ER) is the largest membrane-bound turnover. SEC62 and CCPG1 are transmembrane ER receptors that organelle in eukaryotic cells. Its complex morphology, which involves sheets, tubules and matrices (Chen et al., 2013; Friedman and Voeltz, 2011; Nixon-Abell et al., 2016), mirrors its diverse roles 1Institute of Biochemistry II, Goethe University Frankfurt - Medical Faculty, in a variety of physiological processes including autophagy University Hospital, 60590 Frankfurt am Main, Germany.
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												  Starch Granule Initiation in Arabidopsis Thaliana ChloroplastsThe Plant Journal (2021) doi: 10.1111/tpj.15359 FOCUSED REVIEW Starch granule initiation in Arabidopsis thaliana chloroplasts Angel Merida 1 and Joerg Fettke2,* 1Institute of Plant Biochemistry and Photosynthesis (IBVF), Consejo Superior de Investigaciones Cientıficas (CSIC), Universidad de Sevilla (US), Avda Americo Vespucio, 49, Sevilla 41092, Spain, and 2Biopolymer Analytics, Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, Building 20, Potsdam-Golm 14476, Germany Received 1 April 2021; revised 14 May 2021; accepted 22 May 2021. *For correspondence (e-mail [email protected]). SUMMARY The initiation of starch granule formation and the mechanism controlling the number of granules per plastid have been some of the most elusive aspects of starch metabolism. This review covers the advances made in the study of these processes. The analyses presented herein depict a scenario in which starch synthase isoform 4 (SS4) provides the elongating activity necessary for the initiation of starch granule formation. However, this protein does not act alone; other polypeptides are required for the initiation of an appropriate number of starch granules per chloroplast. The functions of this group of polypeptides include providing suitable substrates (mal- tooligosaccharides) to SS4, the localization of the starch initiation machinery to the thylakoid membranes, and facilitating the correct folding of SS4. The number of starch granules per chloroplast is tightly regulated and depends on the developmental stage of the leaves and their metabolic status. Plastidial phosphorylase (PHS1) and other enzymes play an essential role in this process since they are necessary for the synthesis of the sub- strates used by the initiation machinery.