Li et al. mir-30d in cancer

Table S3. The probe list down-regulated in 2008 cells by mir-30d mimic transfection

Gene Probe symbol Description Row set 12720 8080762 ABHD6 abhydrolase domain containing 6 23797 8092933 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 31394 8073430 ACO2 aconitase 2, mitochondrial 17019 7975598 ACOT1 acyl-CoA thioesterase 1 12466 7936028 ACTR1A ARP1 actin-related 1 homolog A, centractin alpha (yeast) 18102 8056005 ACVR1 activin A , type I 6966 8069676 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 8067 8052882 ADD2 adducin 2 (beta) 26555 8146687 ADHFE1 alcohol dehydrogenase, iron containing, 1 25038 7981514 AHNAK2 AHNAK nucleoprotein 2 19272 8136336 AKR1B10 aldo-keto reductase family 1, member B10 (aldose reductase) 17075 7931832 AKR1C2 aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3- alpha hydroxysteroid dehydrogenase, type III) 7587 8161755 ALDH1A1 aldehyde dehydrogenase 1 family, member A1 13926 8013384 ALDH3A1 aldehyde dehydrogenase 3 family, memberA1 18013 7954777 ALG10 asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe) 30049 7954789 ALG10B asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast) 30449 8090291 ALG1L asparagine-linked glycosylation 1-like 11317 8047577 ALS2CR8 amyotrophic lateral sclerosis 2 (juvenile) region, candidate 8 5576 8112596 ANKRA2 ankyrin repeat, family A (RFXANK-like), 2 22609 8030470 AP2A1 adaptor-related protein complex 2, alpha 1 subunit 14426 8107421 AP3S1 adaptor-related protein complex 3, sigma 1 subunit 26981 7983679 AP4E1 adaptor-related protein complex 4, epsilon 1 subunit 28968 8042402 APLF aprataxin and PNKP like factor 18299 8080926 ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5 32785 8143766 ARP11 actin-related Arp11 25426 8115144 ARSI arylsulfatase family, member I 6497 8052125 ASB3 ankyrin repeat and SOCS box-containing 3 27400 8026024 ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) 29242 8003814 ASPA aspartoacylase (Canavan disease) 24269 8128592 ATG5 ATG5 autophagy related 5 homolog (S. cerevisiae) 1 Li et al. mir-30d in human cancer

26535 8094911 ATP10D ATPase, class V, type 10D 21115 7968062 ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 11781 7908940 ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 25990 8144931 ATP6V1B2 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 11275 8179762 ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 27764 8124942 ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 24790 7987165 AVEN apoptosis, caspase activation inhibitor 5479 8132188 AVL9 AVL9 homolog (S. cerevisiase) 28460 8084206 B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 6878 7984686 BBS4 Bardet-Biedl syndrome 4 21795 7943867 BCO2 beta-carotene oxygenase 2 6964 7991080 BNC1 basonuclin 1 23563 8160260 BNC2 basonuclin 2 13063 7946680 BTBD10 BTB (POZ) domain containing 10 7629 7932542 C10orf67 open reading frame 67 25835 7944751 C11orf63 chromosome 11 open reading frame 63 7064 7951781 C11orf71 chromosome 11 open reading frame 71 9582 7976571 C14orf129 chromosome 14 open reading frame 129 30343 8035886 C19orf12 open reading frame 12 14918 7904244 C1orf161 open reading frame 161 33102 7911897 C1orf174 chromosome 1 open reading frame 174 11724 8061019 C20orf7 chromosome 20 open reading frame 7 13640 8070411 C21orf88 chromosome 21 open reading frame 88 12591 8094550 C4orf19 chromosome 4 open reading frame 19 15166 8099912 C4orf34 chromosome 4 open reading frame 34 9812 8093456 C4orf42 chromosome 4 open reading frame 42 24984 8113113 C5orf36 chromosome 5 open reading frame 36 31140 8113097 C5orf36 chromosome 5 open reading frame 36 4816 8129193 C6orf204 open reading frame 204 32989 8121547 C6orf225 chromosome 6 open reading frame 225 14247 8162624 C9orf21 chromosome 9 open reading frame 21 25535 8165630 C9orf37 chromosome 9 open reading frame 37 13746 8159984 C9orf46 chromosome 9 open reading frame 46 18600 8154416 C9orf93 chromosome 9 open reading frame 93 6673 8147112 CA13 carbonic anhydrase XIII 2 Li et al. mir-30d in human cancer

29829 8067495 CABLES2 Cdk5 and Abl substrate 2 12001 8102415 CAMK2D calcium/calmodulin-dependent protein kinase II delta 24354 7983054 CAPN3 calpain 3, (p94) 18992 7945803 CARS cysteinyl-tRNA synthetase 19719 8103922 CASP3 caspase 3, apoptosis-related cysteine peptidase 9770 7996393 CBFB core-binding factor, beta subunit 28208 8089261 CBLB Cas-Br-M (murine) ecotropic retroviral transforming sequence b 10063 7965846 CCDC53 coiled-coil domain containing 53 4692 8089544 CCDC80 coiled-coil domain containing 80 5733 8029050 CCDC97 coiled-coil domain containing 97 27457 8120719 CD109 CD109 molecule 4669 8176360 CD99 CD99 molecule 7096 8165794 CD99 CD99 molecule 15031 8016324 CDC27 cell division cycle 27 homolog (S. cerevisiae) 30771 8081838 CDGAP Cdc42 GTPase-activating protein 24878 8101031 CDKL2 cyclin-dependent kinase-like 2 (CDC2-related kinase) 26006 8105842 CENPH centromere protein H 7774 8157534 CEP110 centrosomal protein 110kDa 4267 8180257 CEP170 centrosomal protein 170kDa 33216 7925525 CEP170 centrosomal protein 170kDa 8431 7908459 CFH complement factor H 4901 8102328 CFI complement factor I 11719 8081055 CHMP2B chromatin modifying protein 2B 30307 8176234 CLIC2 chloride intracellular channel 2 28163 7910446 COG2 component of oligomeric golgi complex 2 5399 8127563 COL12A1 collagen, type XII, alpha 1 32793 8049088 COPS7B COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis) 11839 8162744 CORO2A coronin, actin binding protein, 2A 24773 8168470 COX7B cytochrome c oxidase subunit VIIb 19430 8098204 CPE carboxypeptidase E 25439 7921099 CRABP2 cellular retinoic acid binding protein 2 6331 8065412 CST1 cystatin SN 10819 8035095 CYP4F11 cytochrome P450, family 4, subfamily F, polypeptide 11 6689 7915896 CYP4Z2P cytochrome P450, family 4, subfamily Z, polypeptide 2 pseudogene 6214 8133976 DBF4 DBF4 homolog (S. cerevisiae) 3 Li et al. mir-30d in human cancer

23420 8160756 DCAF12 DDB1 and CUL4 associated factor 12 30305 7918768 DENND2C DENN/MADD domain containing 2C 14191 7968890 DGKZ diacylglycerol kinase, zeta 104kDa 7032 7934615 DLG5 discs, large homolog 5 (Drosophila) 32686 8112822 DMGDH dimethylglycine dehydrogenase 12558 8088371 DNASE1L3 deoxyribonuclease I-like 3 17051 7918034 DPH5 DPH5 homolog (S. cerevisiae) 32946 8138977 DPY19L1 dpy-19-like 1 (C. elegans) 29514 8145470 DPYSL2 dihydropyrimidinase-like 2 18234 8020779 DSG2 desmoglein 2 7010 7910381 DUSP5P dual specificity phosphatase 5 pseudogene 24547 7965094 E2F7 7 13494 7911096 EFCAB2 EF-hand calcium binding domain 2 28391 8108370 EGR1 early growth response 1 13422 7900051 EIF2C3 eukaryotic translation initiation factor 2C, 3 8694 8097529 ELMOD2 ELMO/CED-12 domain containing 2 20312 8078971 ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 30554 8058627 ERBB4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 21938 8041967 ERLEC1 endoplasmic reticulum lectin 1 24379 8136293 EXOC4 exocyst complex component 4 24765 8052554 FAM161A family with sequence similarity 161, member A 27968 8139160 FAM183B acyloxyacyl hydrolase (neutrophil) 14933 8005501 FAM18B2 family with sequence similarity 18, member B2 32502 8050427 FAM49A family with sequence similarity 49, member A 18545 7983991 FAM81A family with sequence similarity 81, member A 32397 8148184 FAM83A family with sequence similarity 83, member A 6309 8014825 FBXL20 F-box and leucine-rich repeat protein 20 6134 8105111 FBXO4 F-box protein 4 23970 8084947 FBXO45 F-box protein 45 11993 8052742 FBXO48 F-box protein 48 7208 8157074 FKTN fukutin 23337 8113003 FLJ11292 hypothetical protein FLJ11292 33211 7960436 FLJ44874 FLJ44874 protein 4610 7917954 FRRS1 ferric-chelate reductase 1 30846 8111739 FYB FYN binding protein (FYB-120/130) 4 Li et al. mir-30d in human cancer

29908 8175683 GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon 32193 8099807 GAFA3 FGF-2 activity-associated protein 3 8593 8020903 GALNT1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) 12225 8098328 GALNT7 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) 5183 7917779 GCLM glutamate-cysteine ligase, modifier subunit 20797 8121749 GJA1 gap junction protein, alpha 1, 43kDa 26487 7970441 GJB2 gap junction protein, beta 2, 26kDa 28210 7984517 GLCE glucuronic acid epimerase 11782 7965941 GLT8D2 glycosyltransferase 8 domain containing 2 32945 8109344 GM2A GM2 ganglioside 22243 8079950 GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 13369 7946559 GNG10 guanine nucleotide binding protein (G protein), gamma 10 8176 7910520 GNPAT glyceronephosphate O-acyltransferase 20426 8114787 GNPDA1 glucosamine-6-phosphate deaminase 1 19123 8164105 GOLGA1 golgi autoantigen, golgin subfamily a, 1 5836 8078569 GOLGA4 golgi autoantigen, golgin subfamily a, 4 27561 8152355 GOLSYN Golgi-localized protein 16247 7903742 GSTM4 glutathione S-transferase mu 4 10023 8150103 GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa 20256 7897441 H6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 13503 7958158 HCFC2 host cell factor C2 32253 8096385 HERC3 hect domain and RLD 3 18929 8107164 HISPPD1 histidine acid phosphatase domain containing 1 32896 7988124 HISPPD2A histidine acid phosphatase domain containing 2A 10166 8124527 HIST1H1B histone cluster 1, H1b 13112 8117580 HIST1H2AI histone cluster 1, H2ai 13350 8124406 HIST1H2BC histone cluster 1, H2bc 9664 8117382 HIST1H2BD histone cluster 1, H2bd 32634 8124423 HIST1H2BG histone cluster 1, H2bg 15940 8124492 HIST1H2BK histone cluster 1, H2bk 21384 8117415 HIST1H3E histone cluster 1, H3e 27637 8124440 HIST1H3G histone cluster 1, H3g 17694 8124448 HIST1H4H histone cluster 1, H4h 5650 7919619 HIST2H2AA3 histone cluster 2, H2aa3 6019 7905079 HIST2H2AA3 histone cluster 2, H2aa3 5 Li et al. mir-30d in human cancer

29269 7919637 HIST2H2BE histone cluster 2, H2be 10617 7919627 HIST2H4A histone cluster 2, H4a 23028 7905067 HIST2H4A histone cluster 2, H4a 18272 8138708 HOXA1 A1 22208 8103769 HPGD hydroxyprostaglandin dehydrogenase 15-(NAD) 16984 8162570 HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 28577 7904414 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 23636 7959102 HSPB8 heat shock 22kDa protein 8 30427 8040163 IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 25424 8058350 ICA1L islet cell autoantigen 1,69kDa-like 17539 8058552 IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 13119 8021147 IER3IP1 immediate early response 3 interacting protein 1 11076 8160435 IFNE interferon, epsilon 18195 8100541 IGFBP7 insulin-like growth factor binding protein 7 7964 8156873 INVS inversin 22317 8120826 IRAK1BP1 interleukin-1 receptor-associated kinase 1 binding protein 1 30254 7932966 ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 31142 7980970 ITPK1 inositol 1,3,4-triphosphate 5/6 kinase 29040 7981538 JAG2 jagged 2 10964 8154178 JAK2 Janus kinase 2 30068 8076128 JOSD1 Josephin domain containing 1 6867 8004360 KCTD11 potassium channel tetramerisation domain containing 11 14177 7951535 KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 2 7817 8099721 KIAA0746 KIAA0746 protein 32713 8140709 KIAA1324L KIAA1324-like 9958 8098348 KIAA1712 KIAA1712 13392 8079237 KIF15 kinesin family member 15 22227 7982326 KLF13 Kruppel-like factor 13 12278 7974229 KLHDC2 kelch domain containing 2 16089 7907445 KLHL20 kelch-like 20 (Drosophila) 4651 8114300 KLHL3 kelch-like 3 (Drosophila) 10872 8094625 KLHL5 kelch-like 5 (Drosophila) 10710 8038735 KLK11 kallikrein-related peptidase 11 20203 8038760 KLK13 kallikrein-related peptidase 13 10780 8038670 KLK5 kallikrein-related peptidase 5 6 Li et al. mir-30d in human cancer

8252 8038683 KLK6 kallikrein-related peptidase 6 8416 7910950 KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) 12576 7971620 KPNA3 karyopherin alpha 3 (importin alpha 4) 4853 8142232 LAMB4 laminin, beta 4 12703 8158995 LCN1 lipocalin 1 (tear prealbumin) 23818 8005809 LGALS9 lectin, galactoside-binding, soluble, 9 15666 8116593 LOC100128372 similar to hCG2040192 9535 8012282 LOC284023 hypothetical protein LOC284023 13318 8043583 LOC285033 hypothetical protein LOC285033 10828 8094226 LOC285550 hypothetical protein LOC285550 20648 8052438 LOC339803 hypothetical protein LOC339803 7819 8160431 LOC554202 hypothetical LOC554202 11649 8155265 LOC647013 similar to potassium channel tetramerisation domain containing 9 24850 7907970 LOC730144 similar to eukaryotic translation initiation factor 1 23207 8103986 LRP2BP LRP2 binding protein 6242 7902883 LRRC8D leucine rich repeat containing 8 family, member D 17867 7917008 LRRIQ3 leucine-rich repeats and IQ motif containing 3 31564 8150266 LSM1 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) 11503 8063814 LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) 25557 8063835 LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) 23996 7954344 LST-3TM12 organic anion transporter LST-3b 30387 8146934 LY96 lymphocyte antigen 96 4623 8146500 LYN v-yes-1 Yamaguchi sarcoma viral related oncogene homolog 23288 8113064 LYSMD3 LysM, putative peptidoglycan-binding, domain containing 3 20547 8043945 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 18911 8103341 MAP9 microtubule-associated protein 9 32121 7956470 MBD6 methyl-CpG binding domain protein 6 20889 8083429 MBNL1 muscleblind-like (Drosophila) 11069 8091656 METT5D1 methyltransferase 5 domain containing 1 9365 8023377 MEX3C mex-3 homolog C (C. elegans) 21050 8010092 MFSD11 major facilitator superfamily domain containing 11 31471 7928937 MINPP1 multiple inositol polyphosphate histidine phosphatase, 1 9731 8004144 MIS12 MIS12, MIND kinetochore complex component, homolog (S. pombe) 32968 7951309 MMP13 matrix metallopeptidase 13 (collagenase 3) 7887 8151684 MMP16 matrix metallopeptidase 16 (membrane-inserted) 7 Li et al. mir-30d in human cancer

32429 8003068 MPHOSPH6 M-phase phosphoprotein 6 21718 8176174 MPP1 membrane protein, palmitoylated 1, 55kDa 10830 7947274 MPPED2 metallophosphoesterase domain containing 2 32566 7952036 MPZL3 myelin protein zero-like 3 5276 8176219 MTCP1 mature T-cell proliferation 1 28767 8147483 MTDH metadherin 31122 8094719 N4BP2 NEDD4 binding protein 2 7739 7908694 NAV1 neuron navigator 1 12135 8007462 NBR2 neighbor of BRCA1 gene 2 (non-protein coding) 31726 8043602 NCAPH non-SMC condensin I complex, subunit H 13927 7953715 NECAP1 NECAP endocytosis associated 1 31364 8149835 NEFL neurofilament, light polypeptide 20906 7965956 NFYB nuclear transcription factor Y, beta 14824 8151952 NIPAL2 NIPA-like domain containing 2 9028 8100464 NMU neuromedin U 17239 7908003 NPL N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) 8889 8078272 NR1D2 subfamily 1, group D, member 2 32774 7990555 NRG4 neuregulin 4 17711 8150928 NSMAF neutral sphingomyelinase (N-SMase) activation associated factor 25989 8172708 NUDT11 nudix (nucleoside diphosphate linked moiety X)-type motif 11 29934 7968132 NUPL1 nucleoporin like 1 11044 8157804 OLFML2A olfactomedin-like 2A 7385 7925492 OPN3 opsin 3 9941 7992865 OR1F2P olfactory receptor, family 1, subfamily F, member 2 19916 8117622 OR2B6 olfactory receptor, family 2, subfamily B, member 6 18537 7965064 OSBPL8 oxysterol binding protein-like 8 11701 8057689 OSGEPL1 O-sialoglycoprotein endopeptidase-like 1 31525 8009713 OTOP3 otopetrin 3 28461 8113981 P4HA2 prolyl 4-hydroxylase, alpha polypeptide II 10712 7942476 PAAF1 proteasomal ATPase-associated factor 1 12056 8167862 PAGE2B P antigen family, member 2B 11531 8167880 PAGE5 P antigen family, member 5 (prostate associated) 6941 7943218 PANX1 pannexin 1 15626 8105495 PART1 prostate androgen-regulated transcript 1 28786 8087951 PBRM1 polybromo 1 8 Li et al. mir-30d in human cancer

32096 8108724 PCDHB10 protocadherin beta 10 19482 8108737 PCDHB13 protocadherin beta 13 17098 8108744 PCDHB14 protocadherin beta 14 22991 8108713 PCDHB8 protocadherin beta 8 24908 8108720 PCDHB9 protocadherin beta 9 24804 8027642 PDCD2L programmed cell death 2-like 9384 8137670 PDGFA platelet-derived growth factor alpha polypeptide 30412 8104693 PDZD2 PDZ domain containing 2 30947 8091446 PFN2 profilin 2 27578 7901951 PGM1 phosphoglucomutase 1 26431 8127841 PGM3 phosphoglucomutase 3 26990 7932530 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 17771 8114215 PITX1 paired-like homeodomain 1 13300 8121768 PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta 9665 7999588 PLA2G10 phospholipase A2, group X 19838 8102321 PLA2G12A phospholipase A2, group XIIA 19906 8021275 POLI polymerase (DNA directed) iota 7825 7919197 POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 17226 8128565 POPDC3 popeye domain containing 3 4940 8099633 PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 18941 8113726 PPIC peptidylprolyl isomerase C (cyclophilin C) 6607 8058147 PPIL3 peptidylprolyl isomerase (cyclophilin)-like 3 16001 8122734 PPP1R14C protein phosphatase 1, regulatory (inhibitor) subunit 14C 5968 8114900 PPP2R2B protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform 12250 7976451 PPP4R4 protein phosphatase 4, regulatory subunit 4 14751 7911078 PPPDE1 PPPDE peptidase domain containing 1 17533 8135378 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta 11554 8101284 PRKG2 protein kinase, cGMP-dependent, type II 28151 7950544 PRKRIR protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) 19405 8099255 PSAPL1 prosaposin-like 1 16507 7903188 PTBP2 polypyrimidine tract binding protein 2 20590 7904293 PTGFRN prostaglandin F2 receptor negative regulator 5368 8163328 PTGR1 prostaglandin reductase 1 11639 8157650 PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 9 Li et al. mir-30d in human cancer

12327 8052418 PUS10 pseudouridylate synthase 10 30271 8080781 PXK PX domain containing serine/threonine kinase 6530 7950899 RAB38 RAB38, member RAS oncogene family 24032 8090509 RAB7A RAB7A, member RAS oncogene family 23155 8130151 RAET1E retinoic acid early transcript 1E 32570 7981346 RAGE renal tumor antigen 4826 8175169 RAP2C RAP2C, member of RAS oncogene family 33109 8078286 RARB , beta 8775 7963631 RARG retinoic acid receptor, gamma 20791 7965226 RASSF9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 32305 7902023 RAVER2 ribonucleoprotein, PTB-binding 2 27212 8078330 RBMS3 RNA binding motif, single stranded interacting protein 24963 7968928 RCN1 reticulocalbin 1, EF-hand calcium binding domain 14762 7975284 RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 28514 8053551 REEP1 receptor accessory protein 1 25060 7927786 REEP3 receptor accessory protein 3 8279 8033097 RFX2 regulatory factor X, 2 (influences HLA class II expression) 9025 7946569 RNF141 ring finger protein 141 32529 7908169 RNF2 ring finger protein 2 30691 8076415 RNU13P1 RNA, U13 small nuclear pseudogene 1 27039 7948894 RNU2-1 RNA, U2 small nuclear 1 5002 8023252 RPL17 ribosomal protein L17 16779 8131705 RPL23P8 ribosomal protein L23 pseudogene 8 8805 8022914 RPRD1A regulation of nuclear pre-mRNA domain containing 1A 22613 7909661 RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 19941 7964733 RPSAP52 ribosomal protein SA pseudogene 52 20865 8027354 RPSAP58 ribosomal protein SA pseudogene 58 19681 8048340 RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) 16926 8040223 RRM2 ribonucleotide reductase M2 6652 8152133 RRM2B ribonucleotide reductase M2 B (TP53 inducible) 13387 7928516 SAMD8 sterile alpha motif domain containing 8 19057 8085716 SATB1 SATB homeobox 1 18475 7969493 SCEL sciellin 31242 8131550 SCIN scinderin 6177 8171561 SCML2 sex comb on midleg-like 2 (Drosophila) 10 Li et al. mir-30d in human cancer

24171 8003060 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 21565 7978718 SEC23A Sec23 homolog A (S. cerevisiae) 25555 8102482 SEC24D SEC24 family, member D (S. cerevisiae) 29174 8140534 SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 9459 8110932 SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 11716 8132292 SEPT7 septin 7 29096 8083779 SERPINI1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 5409 8102848 SETD7 SET domain containing (lysine methyltransferase) 7 11214 8100318 SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 13643 8048717 SGPP2 sphingosine-1-phosphate phosphotase 2 11179 7921900 SH2D1B SH2 domain containing 1B 30756 8049969 SH3YL1 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) 19949 7944049 SIDT2 SID1 transmembrane family, member 2 5141 8151559 SLC10A5 solute carrier family 10 (sodium/bile acid cotransporter family), member 5 21079 7987192 SLC12A6 solute carrier family 12 (potassium/chloride transporters), member 6 10563 8082012 SLC15A2 solute carrier family 15 (H+/peptide transporter), member 2 28995 8042310 SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 18766 8044499 SLC20A1 solute carrier family 20 (phosphate transporter), member 1 25863 7904226 SLC22A15 solute carrier family 22, member 15 22595 8140814 SLC25A40 solute carrier family 25, member 40 32515 7988426 SLC30A4 solute carrier family 30 (zinc transporter), member 4 16957 8081667 SLC35A5 solute carrier family 35, member A5 18578 7939590 SLC35C1 solute carrier family 35, member C1 28926 7965964 SLC41A2 solute carrier family 41, member 2 28585 8013364 SLC47A2 solute carrier family 47, member 2 4857 8078014 SLC6A6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 10859 8102800 SLC7A11 solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 14231 8121794 SMPDL3A sphingomyelin phosphodiesterase, acid-like 3A 18529 7905598 SNAPIN SNAP-associated protein 18741 8101762 SNCA synuclein, alpha (non A4 component of amyloid precursor) 5314 7982098 SNORD109A small nucleolar RNA, C/D box 109A 12726 7981947 SNORD109A small nucleolar RNA, C/D box 109A 17531 7981970 SNORD116-11 small nucleolar RNA, C/D box 116-11 11812 7981988 SNORD116-20 small nucleolar RNA, C/D box 116-20 11 Li et al. mir-30d in human cancer

17337 7982002 SNORD116-27 small nucleolar RNA, C/D box 116-27 18638 7981966 SNORD116-3 small nucleolar RNA, C/D box 116-3 26615 7981953 SNORD116-3 small nucleolar RNA, C/D box 116-3 13479 7981955 SNORD116-4 small nucleolar RNA, C/D box 116-4 29781 7981964 SNORD116-8 small nucleolar RNA, C/D box 116-8 32370 7964248 SNORD59A small nucleolar RNA, C/D box 59A 14919 8131957 SNX10 sorting nexin 10 12855 7907702 SOAT1 sterol O-acyltransferase 1 18321 8131709 SP4 15904 8041236 SPAST spastin 23447 8098414 SPCS3 signal peptidase complex subunit 3 homolog (S. cerevisiae) 29653 7920196 SPRR2D small proline-rich protein 2D 31387 8003722 SRR serine racemase 6029 8112940 SSBP2 single-stranded DNA binding protein 2 14404 8091648 SSR3 signal sequence receptor, gamma (translocon-associated protein gamma) 26966 8172787 SSX2 synovial sarcoma, X breakpoint 2 4382 8180372 ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6- sialyltransferase 2 6637 8018761 ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6- sialyltransferase 2 21033 8165866 STS steroid sulfatase (microsomal), isozyme S 32841 7967685 STX2 syntaxin 2 8666 8129590 STX7 syntaxin 7 6809 8122600 STXBP5 syntaxin binding protein 5 (tomosyn) 4685 8100808 SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1 18977 8156321 SYK spleen tyrosine kinase 13014 8000856 TBC1D10B TBC1 domain family, member 10B 21198 8094476 TBC1D19 TBC1 domain family, member 19 9826 8169186 TBC1D8B TBC1 domain family, member 8B (with GRAM domain) 29736 8122182 TBPL1 TBP-like 1 21380 7939184 TCP11L1 t-complex 11 (mouse)-like 1 10077 7958262 TCP11L2 t-complex 11 (mouse)-like 2 29264 8085360 TIMP4 TIMP metallopeptidase inhibitor 4 21861 7978208 TINF2 TERF1 (TRF1)-interacting nuclear factor 2 19358 8039144 TMC4 transmembrane channel-like 4 12 Li et al. mir-30d in human cancer

16338 7980296 TMED10 transmembrane emp24-like trafficking protein 10 (yeast) 23647 8148949 TMED10P transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 25303 8131539 TMEM106B transmembrane protein 106B 18906 7954985 TMEM117 transmembrane protein 117 19403 8098916 TMEM129 transmembrane protein 129 25897 8120239 TMEM14A transmembrane protein 14A 16508 7903586 TMEM167B transmembrane protein 167B 20767 8039905 TMEM167B transmembrane protein 167B 15115 8081288 TMEM45A transmembrane protein 45A 24685 8172022 TMEM47 transmembrane protein 47 32013 7901135 TMEM69 transmembrane protein 69 16173 7987869 TMEM87A transmembrane protein 87A 27411 7983734 TMOD2 tropomodulin 2 (neuronal) 4717 7929168 TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 13267 8150962 TOX thymocyte selection-associated high mobility group box 6958 8128939 TRAF3IP2 TRAF3 interacting protein 2 20935 7978739 TRAPPC6B trafficking protein particle complex 6B 14127 8017106 TRIM37 tripartite motif-containing 37 20170 8174361 TSC22D3 TSC22 domain family, member 3 23557 7908147 TSEN15 tRNA splicing endonuclease 15 homolog (S. cerevisiae) 15111 8054166 TSGA10 testis specific, 10 16526 7956613 TSPAN31 tetraspanin 31 8526 8166784 TSPAN7 tetraspanin 7 9805 7991485 TTC23 tetratricopeptide repeat domain 23 29588 7976128 TTC8 tetratricopeptide repeat domain 8 10984 7917199 TTLL7 tubulin tyrosine ligase-like family, member 7 7733 7962441 TWF1 twinfilin, actin-binding protein, homolog 1 (Drosophila) 22676 8013906 TWF1 twinfilin, actin-binding protein, homolog 1 (Drosophila) 29230 8165064 UBAC1 UBA domain containing 1 27690 7905731 UBAP2L ubiquitin associated protein 2-like 8688 8049574 UBE2F ubiquitin-conjugating enzyme E2F (putative) 15808 8128111 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 11212 8146379 UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 22051 8012376 VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 13289 7918157 VAV3 vav 3 guanine nucleotide exchange factor 13 Li et al. mir-30d in human cancer

20033 8091678 VEPH1 ventricular zone expressed PH domain homolog 1 () 5075 8053562 VPS24 vacuolar protein sorting 24 homolog (S. cerevisiae) 26206 8108627 VTRNA1-1 vault RNA 1-1 24490 8059361 WDFY1 WD repeat and FYVE domain containing 1 13657 8169519 WDR44 WD repeat domain 44 15333 8088180 WNT5A wingless-type MMTV integration site family, member 5A 13452 8146900 XKR9 XK, Kell blood group complex subunit-related family, member 9 9662 8089701 ZBTB20 and BTB domain containing 20 20190 8083092 ZBTB38 zinc finger and BTB domain containing 38 18251 7923119 ZBTB41 zinc finger and BTB domain containing 41 20731 7962367 ZCRB1 zinc finger CCHC-type and RNA binding motif 1 28597 7970524 ZDHHC20 zinc finger, DHHC-type containing 20 21224 8086505 ZDHHC3 zinc finger, DHHC-type containing 3 23634 8151561 ZFAND1 zinc finger, AN1-type domain 1 31197 8004081 ZFP3 zinc finger protein 3 homolog (mouse) 28740 8124498 ZNF204 zinc finger protein 204 pseudogene 22153 7933209 ZNF22 zinc finger protein 22 (KOX 15) 25760 8153935 ZNF252 zinc finger protein 252 18895 8028206 ZNF345 zinc finger protein 345 26088 8035813 ZNF43 zinc finger protein 43 26809 8025964 ZNF439 zinc finger protein 439 29998 8027345 ZNF492 zinc finger protein 492 20314 8079229 ZNF501 zinc finger protein 501 22906 8113761 ZNF608 zinc finger protein 608 9267 8035838 ZNF724P zinc finger protein 724 pseudogene 23445 8033809 ZNF846 zinc finger protein 846 8720 8078380 ZNF860 zinc finger protein 860 17927 7997247 ZNRF1 zinc and ring finger 1

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