A New Kind of Science, by Stephen Wolfram, Wolfram Media, Inc., Champaign, IL, 2002, Xiv+1197 Pp., $44.95, ISBN 1-57955-008-8
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On Genes and Form Enrico Coen*, Richard Kennaway and Christopher Whitewoods
© 2017. Published by The Company of Biologists Ltd | Development (2017) 144, 4203-4213 doi:10.1242/dev.151910 REVIEW On genes and form Enrico Coen*, Richard Kennaway and Christopher Whitewoods ABSTRACT aside ‘not because I doubt for a moment the facts nor dispute the The mechanisms by which organisms acquire their sizes and shapes hypotheses nor decry the importance of one or other; but because we through growth was a major focus of D’Arcy Thompson’s book are so much in the dark as to the mysterious field of force in which the On Growth and Form. By applying mathematical and physical chromosomes lie, far from the visible horizon of physical science, principles to a range of biological forms, Thompson achieved fresh that the matter lies (for the present) beyond the range of problems ’ insights, such as the notion that diverse biological shapes could be which this book professes to discuss (p. 341, Thompson, 1942). related through simple deformations of a coordinate system. However, Much of the darkness and mystery Thompson refers to was lifted in Thompson considered genetics to lie outside the scope of his work, the second half of the 20th century, as the nature of genes and their even though genetics was a growing discipline at the time the mechanisms of action became clear. Nevertheless, the link between book was published. Here, we review how recent advances in cell, gene activity and the generation of form remained obscure, largely developmental, evolutionary and computational biology allow because of difficulties in determining growth patterns and relating Thompson’s ideas to be integrated with genes and the processes them to physico-chemical mechanisms. -
John Wells: Centenary Display Jonty Lees: Artist in Residence Autumn 2005 Winter 2007 6 October 2007 – 13 January 2008
Kenneth Martin & Mary Martin: Constructed Works John Wells: Centenary Display Jonty Lees: Artist in Residence Autumn 2005 Winter 2007 6 October 2007 – 13 January 2008 Notes for Teachers - 1 - Contents Introduction 3 Kenneth Martin & Marty Martin: Constructed Works 4 John Wells: Centenary Display 11 Jonty Lees: Artist in Residence 14 Bernard Leach and his Circle 17 Ways of Looking – Questions to Ask of Any Artwork 19 Suggested Activities 20 Tate Resources & Contacts 22 Further Reading 22 Key Art Terms 24 - 2 - Introduction The Winter 2007 displays present: Kenneth Martin and Mary Martin: Constructed Works (Gallery 1, 3, 4, and the Apse) This exhibition shows the work of two of Britain’s key post-war abstract artists, Kenneth Martin and Mary Martin. The exhibition includes nearly 50 works and focuses on Kenneth Martin’s mobiles and his later Chance and Order series of abstract paintings, alongside Mary Martin’s relief sculptures. Modernism and St Ives from 1940 (Lower Gallery 2) This display of artists associated with St Ives from the Tate Collection is designed to complement the Kenneth Martin and Mary Martin exhibition. It includes work by Mary Martin, Victor Pasmore, Anthony Hill and Adrian Heath alongside St Ives artists such as Peter Lanyon, Terry Frost and Ben Nicholson. John Wells: Centenary Display (The Studio) A small display of paintings and relief constructions by John Wells, designed to celebrate the centenary of his birth. Bernard Leach and his Circle (Upper Gallery 2) Ceramics by Bernard Leach and key studio potters who worked alongside him. These works form part of the Wingfield-Digby Collection, recently gifted to Tate St Ives. -
IV. on Growth and Form and D'arcy Wenworth Thompson
Modified 4th chapter from the novel „Problem promatrača“ („Problem of the observer“), by Antonio Šiber, Jesenski i Turk (2008). Uploaded on the author website, http://asiber.ifs.hr IV. On growth and form and D'Arcy Wenworth Thompson St. Andrews on the North Sea is a cursed town for me. In a winter afternoon in year 1941, a bearded, grey-haired eighty year old man with swollen eyes and big head covered by even bigger hat was descending down the hill side to the harbor. He had a huge butcher’s knife in his hand. A few workers that gathered around a carcass of a huge whale which the North Sea washed on the docks visibly retreated away from a disturbing scene of a tall and hairy figure with an impressive knife. The beardo approached the whale carcass and in less than a minute swiftly separated a thick layer of underskin fat, and then also several large pieces of meat. He carefully stored them in a linen bag that he threw over the shoulder and slowly started his return, uphill. The astonished workers watched the whole procedure almost breathlessly, and then it finally occurred to one of them who was looking in the back of a slowly distancing old man that it was not such a bad idea. It is a war time and shortage of meat. And if professor of natural philosophy Sir D’Arcy Thompson concluded that the fish is edible… Who would know better than him? After all, he thinks only of animals and plants. Of course, Thomson knew perfectly well that the whale is not fish, but to workers this was of not much importance. -
Perspectives
PERspECTIVES steady-state spatial patterns could also arise TIMELINE from such processes in living systems21. The full formalization of the nature of Self-organization in cell biology: self-organization processes came from the work of Prigogine on instabilities and the a brief history emergence of organization in ‘dissipative systems’ in the 1960s22–24, and from Haken who worked on similar issues under the Eric Karsenti name of synergetics11 (TIMELINE). Abstract | Over the past two decades, molecular and cell biologists have made It was clear from the outset that the emergence of dynamical organization important progress in characterizing the components and compartments of the observed in physical and chemical systems cell. New visualization methods have also revealed cellular dynamics. This has should be of importance to biology, and raised complex issues about the organization principles that underlie the scientists who are interested in the periodic emergence of coherent dynamical cell shapes and functions. Self-organization manifestations of life and developmental concepts that were first developed in chemistry and physics and then applied to biology have been actively working in this field19,25–29. From a more general point various morphogenetic problems in biology over the past century are now of view, Kauffman built on the ideas of beginning to be applied to the organization of the living cell. Prigogine and Haken in an attempt to explain the origin of order in biology30–32. One of the most fundamental problems in this complex state of living matter as a self- Self-organization was also invoked to biology concerns the origin of forms and organized end8–10. -
Copyrighted Material
1 Symmetry of Shapes in Biology: from D’Arcy Thompson to Morphometrics 1.1. Introduction Any attentive observer of the morphological diversity of the living world quickly becomes convinced of the omnipresence of its multiple symmetries. From unicellular to multicellular organisms, most organic forms present an anatomical or morphological organization that often reflects, with remarkable precision, the expression of geometric principles of symmetry. The bilateral symmetry of lepidopteran wings, the rotational symmetry of starfish and flower corollas, the spiral symmetry of nautilus shells and goat horns, and the translational symmetry of myriapod segments are all eloquent examples (Figure 1.1). Although the harmony that emanates from the symmetry of organic forms has inspired many artists, it has also fascinated generations of biologists wondering about the regulatory principles governing the development of these forms. This is the case for D’Arcy Thompson (1860–1948), for whom the organic expression of symmetries supported his vision of the role of physical forces and mathematical principles in the processes of morphogenesisCOPYRIGHTED and growth. D’Arcy Thompson’s MATERIAL work also foreshadowed the emergence of a science of forms (Gould 1971), one facet of which is a new branch of biometrics, morphometrics, which focuses on the quantitative description of shapes and the statistical analysis of their variations. Over the past two decades, morphometrics has developed a methodological Chapter written by Sylvain GERBER and Yoland SAVRIAMA. 2 Systematics and the Exploration of Life framework for the analysis of symmetry. The study of symmetry is today at the heart of several research programs as an object of study in its own right, or as a property allowing developmental or evolutionary inferences. -
A New Kind of Science; Stephen Wolfram, Wolfram Media, Inc., 2002
A New Kind of Science; Stephen Wolfram, Wolfram Media, Inc., 2002. Almost twenty years ago, I heard Stephen Wolfram speak at a Gordon Confer- ence about cellular automata (CA) and how they can be used to model seashell patterns. He had recently made a splash with a number of important papers applying CA to a variety of physical and biological systems. His early work on CA focused on a classification of the behavior of simple one-dimensional sys- tems and he published some interesting papers suggesting that CA fall into four different classes. This was original work but from a mathematical point of view, hardly rigorous. What he was essentially claiming was that even if one adds more layers of complexity to the simple rules, one does not gain anything be- yond these four simples types of behavior (which I will describe below). After a two decade hiatus from science (during which he founded Wolfram Science, the makers of Mathematica), Wolfram has self-published his magnum opus A New Kind of Science which continues along those lines of thinking. The book itself is beautiful to look at with almost a thousand pictures, 850 pages of text and over 300 pages of detailed notes. Indeed, one might suggest that the main text is for the general public while the notes (which exceed the text in total words) are aimed at a more technical audience. The book has an associated web site complete with a glowing blurb from the publisher, quotes from the media and an interview with himself to answer questions about the book. -
The Problem of Distributed Consensus: a Survey Stephen Wolfram*
The Problem of Distributed Consensus: A Survey Stephen Wolfram* A survey is given of approaches to the problem of distributed consensus, focusing particularly on methods based on cellular automata and related systems. A variety of new results are given, as well as a history of the field and an extensive bibliography. Distributed consensus is of current relevance in a new generation of blockchain-related systems. In preparation for a conference entitled “Distributed Consensus with Cellular Automata and Related Systems” that we’re organizing with NKN (= “New Kind of Network”) I decided to explore the problem of distributed consensus using methods from A New Kind of Science (yes, NKN “rhymes” with NKS) as well as from the Wolfram Physics Project. A Simple Example Consider a collection of “nodes”, each one of two possible colors. We want to determine the majority or “consensus” color of the nodes, i.e. which color is the more common among the nodes. A version of this document with immediately executable code is available at writings.stephenwolfram.com/2021/05/the-problem-of-distributed-consensus Originally published May 17, 2021 *Email: [email protected] 2 | Stephen Wolfram One obvious method to find this “majority” color is just sequentially to visit each node, and tally up all the colors. But it’s potentially much more efficient if we can use a distributed algorithm, where we’re running computations in parallel across the various nodes. One possible algorithm works as follows. First connect each node to some number of neighbors. For now, we’ll just pick the neighbors according to the spatial layout of the nodes: The algorithm works in a sequence of steps, at each step updating the color of each node to be whatever the “majority color” of its neighbors is. -
Theory of the Growth and Evolution of Feather Shape
30JOURNAL R.O. PRUMOF EXPERIMENTAL AND S. WILLIAMSON ZOOLOGY (MOL DEV EVOL) 291:30–57 (2001) Theory of the Growth and Evolution of Feather Shape RICHARD O. PRUM* AND SCOTT WILLIAMSON Department of Ecology and Evolutionary Biology, and Natural History Museum, University of Kansas, Lawrence, Kansas 66045 ABSTRACT We present the first explicit theory of the growth of feather shape, defined as the outline of a pennaceous feather vane. Based on a reanalysis of data from the literature, we pro- pose that the absolute growth rate of the barbs and rachis ridges, not the vertical growth rate, is uniform throughout the follicle. The growth of feathers is simulated with a mathematical model based on six growth parameters: (1) absolute barb and rachis ridge growth rate, (2) angle of heli- cal growth of barb ridges, (3) initial barb ridge number, (4) new barb ridge addition rate, (5) barb ridge diameter, and (6) the angle of barb ramus expansion following emergence from the sheath. The model simulates growth by cell division in the follicle collar and, except for the sixth param- eter, does not account for growth by differentiation in cell size and shape during later keratiniza- tion. The model can simulate a diversity of feather shapes that correspond closely in shape to real feathers, including various contour feathers, asymmetrical feathers, and even emarginate prima- ries. Simulations of feather growth under different parameter values demonstrate that each pa- rameter can have substantial, independent effects on feather shape. Many parameters also have complex and redundant effects on feather shape through their influence on the diameter of the follicle, the barb ridge fusion rate, and the internodal distance. -
A New Kind of Science: a 15-Year View
A New Kind of Science: A 15-Year View Stephen Wolfram Founder and CEO Wolfram Research, Inc. [email protected] Starting now, in celebration of its 15th anniversary, A New Kind of Science will be freely available in its entirety, with high-resolution images, on the web or for download. It’s now 15 years since I published my book A New Kind of Science — more than 25 since I started writing it, and more than 35 since I started working towards it. But with every passing year I feel I under- stand more about what the book is really about—and why it’s impor- tant. I wrote the book, as its title suggests, to contribute to the progress of science. But as the years have gone by, I’ve realized that the core of what’s in the book actually goes far beyond science—into many areas that will be increasingly important in defining our whole future. So, viewed from a distance of 15 years, what is the book really about? At its core, it’s about something profoundly abstract: the the- ory of all possible theories, or the universe of all possible universes. But for me one of the achievements of the book is the realization that one can explore such fundamental things concretely—by doing actual experiments in the computational universe of possible programs. And https://doi.org/10.25088/ComplexSystems.26.3.197 198 S. Wolfram in the end the book is full of what might at first seem like quite alien pictures made just by running very simple such programs. -
Pattern Formation in Nature: Physical Constraints and Self-Organising Characteristics
Pattern formation in nature: Physical constraints and self-organising characteristics Philip Ball ________________________________________________________________ Abstract The formation of patterns is apparent in natural systems ranging from clouds to animal markings, and from sand dunes to the intricate shells of microscopic marine organisms. Despite the astonishing range and variety of such structures, many seem to have analogous features: the zebra’s stripes put us in mind of the ripples of blown sand, for example. In this article I review some of the common patterns found in nature and explain how they are typically formed through simple, local interactions between many components of a system – a form of physical computation that gives rise to self- organisation and emergent structures and behaviours. ________________________________________________________________ Introduction When the naturalist Joseph Banks first encountered Fingal’s Cave on the Scottish island of Staffa, he was astonished by the quasi-geometric, prismatic pillars of rock that flank the entrance. As Banks put it, Compared to this what are the cathedrals or palaces built by men! Mere models or playthings, as diminutive as his works will always be when compared with those of nature. What now is the boast of the architect! Regularity, the only part in which he fancied himself to exceed his mistress, Nature, is here found in her possession, and here it has been for ages undescribed. This structure has a counterpart on the coast of Ireland: the Giant’s Causeway in County Antrim, where again one can see the extraordinarily regular and geometric honeycomb structure of the fractured igneous rock (Figure 1). When we make an architectural pattern like this, it is through careful planning and construction, with each individual element cut to shape and laid in place. -
Word Doc.Corrected Nature As Strategy for Pattern Formation In
Proceedings of Bridges 2015: Mathematics, Music, Art, Architecture, Culture Nature as a Strategy for Pattern Formation in Art Irene Rousseau MFA, Ph.D.,Artist 41Sunset Drive Summit, New Jersey, 07901, USA [email protected], www.irenerousseau.com Abstract We live in a world of structures and patterns that are determined by the interaction of natural forces and environmental factors. Understanding forms in nature provides answers to the molecular structure and how the use of minimal energy creates these patterns. Research by esteemed scientists such as D’Arcy Wentworth Thompson, Charles Darwin and Leonard da Vinci will be noted as evidence for the conclusion. Why is this an important topic? This knowledge can be and has been adapted to many of today’s innovations and uses of technology in medicine and architecture. Applications in these fields will be cited. My creative work will show my strategy for structures and patterns. These are a sequence of numbers combined to stretch the space that show transition and change, that relate to forms in nature. Introduction Where do Structure and Patterns come from? Scientific research has provided the answer, that the molecular structure of a form is determined by intrinsic, natural forces, although random changes are governed by extrinsic, environmental factors of how living organisms evolve and adapt over time. D’Arcy Thompson in his monumental book On Growth and Form states: “Shape or form…is the resultant of a number of forces, which represent or symbolize the manifestations of various kinds of energy…Nature creates structures and patterns according to minimal use of energy”. -
On Growth and Form
On Growth and Form On Growth and Form On Growth and Form This collection of essays by architects and artists revisits D’Arcy Thompson’s influential bookOn Growth and Form Organic Architecture and Beyond (1917) to explore the link between morphology and form- making in historical and contemporary design. This book sheds new light on architects’ ongoing fascination with Edited by Philip Beesley & Sarah Bonnemaison organicism, and the relation between nature and artifice that makes our world. Beesley • Bonnemaison on growth and form Organic architecture and beyond Tuns Press and Riverside Architectural Press 2 on growth and form Tuns Press Faculty of Architecture and Planning Dalhousie University P.O. Box 1000, Halifax, NS Canada B3J 2X4 web: tunspress.dal.ca © 2008 by Tuns Press and Riverside Architectural Press All Rights Reserved. Published March 2008 Printed in Canada Library and Archives Canada Cataloguing in Publication On growth and form : organic architecture and beyond / edited by Sarah Bonnemaison and Philip Beesley. Includes bibliographical references. ISBN 978-0-929112-54-1 1. Organic architecture. 2. Nature (Aesthetics) 3. Thompson, D’Arcy Wentworth, 1860-1948. On growth and form. I. Bonnemaison, Sarah, 1958- II. Beesley, Philip, 1956- NA682.O73O6 2008 720’.47 C2008-900017-X contents 7 Why Revisit D’Arcy Wentworth Thompson’sOn Growth and Form? Sarah Bonnemaison and Philip Beesley history and criticism 16 Geometries of Creation: Architecture and the Revision of Nature Ryszard Sliwka 30 Old and New Organicism in Architecture: The Metamorphoses of an Aesthetic Idea Dörte Kuhlmann 44 Functional versus Purposive in the Organic Forms of Louis Sullivan and Frank Lloyd Wright Kevin Nute 54 The Forces of Matter Hadas A.