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And Interspecific Variation in the Intestinal Microbiomes Of
bioRxiv preprint doi: https://doi.org/10.1101/864439; this version posted December 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Metagenomic shotgun analyses reveal complex patterns of 2 intra- and interspecific variation in the intestinal 3 microbiomes of codfishes 4 5 6 Even Sannes Riiser1*, Thomas H.A. Haverkamp1,2, Srinidhi Varadharajan1, 7 Ørnulf Borgan3, Kjetill S. Jakobsen1, Sissel Jentoft1 and Bastiaan Star1* 8 9 1Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, 10 University of Oslo, PO Box 1066, Blindern, N-0316 Oslo, Norway. 11 12 2Present Address: Department of Epidemiology, Norwegian Veterinary Institute, 13 Oslo, Norway 14 15 3Department of Mathematics, University of Oslo, PO Box 1053, Blindern, N- 16 0316 Oslo, Norway. 17 18 19 * Correspondence 20 Even Sannes Riiser*: [email protected] 21 Bastiaan Star*: [email protected] 22 23 24 Abstract 25 The relative importance of host-specific selection or environmental factors in 26 determining the composition of the intestinal microbiome in wild vertebrates 27 remains poorly understood. Here, we use metagenomic shotgun sequencing of 28 individual specimens to compare the intra- and interspecific variation of 29 intestinal microbiome communities in two ecotypes (NEAC and NCC) of 30 Atlantic cod (Gadus morhua) –that have distinct behavior and habitats– and 31 three Gadidae species that occupy a range of ecological niches. Interestingly, we 32 find significantly diverged microbiomes amongst the two Atlantic cod ecotypes. -
Atlas of North Sea Fishes
ICES COOPERATIVE RESEARCH REPORT RAPPORT DES RECHERCHES COLLECTIVES NO. 194 Atlas of North Sea Fishes Based on bottom-trawl survey data for the years 1985—1987 Ruud J. Knijn1, Trevor W. Boon2, Henk J. L. Heessen1, and John R. G. Hislop3 'Netherlands Institute for Fisheries Research, Haringkade 1, PO Box 6 8 , 1970 AB Umuiden, The Netherlands 2MAFF, Fisheries Laboratory, Lowestoft, Suffolk NR33 OHT, England 3Marine Laboratory, PO Box 101, Victoria Road, Aberdeen AB9 8 DB, Scotland Fish illustrations by Peter Stebbing International Council for the Exploration of the Sea Conseil International pour l’Exploration de la Mer Palægade 2—4, DK-1261 Copenhagen K, Denmark September 1993 Copyright ® 1993 All rights reserved No part of this book may be reproduced in any form by photostat or microfilm or stored in a storage system or retrieval system or by any other means without written permission from the authors and the International Council for the Exploration of the Sea Illustrations ® 1993 Peter Stebbing Published with financial support from the Directorate-General for Fisheries, AIR Programme, of the Commission of the European Communities ICES Cooperative Research Report No. 194 Atlas of North Sea Fishes ISSN 1017-6195 Printed in Denmark Contents 1. Introduction............................................................................................................... 1 2. Recruit surveys.................................................................................. 3 2.1 General purpose of the surveys..................................................................... -
Fish and Fish Populations
Intended for Energinet Document type Report Date March 2021 THOR OWF TECHNICAL REPORT – FISH AND FISH POPULATIONS THOR OWF TECHNICAL REPORT – FISH AND FISH POPULATIONS Project name Thor OWF environmental investigations Ramboll Project no. 1100040575 Hannemanns Allé 53 Recipient Margot Møller Nielsen, Signe Dons (Energinet) DK-2300 Copenhagen S Document no 1100040575-1246582228-4 Denmark Version 5.0 (final) T +45 5161 1000 Date 05/03/2021 F +45 5161 1001 Prepared by Louise Dahl Kristensen, Sanne Kjellerup, Danni J. Jensen, Morten Warnick https://ramboll.com Stæhr Checked by Anna Schriver Approved by Lea Bjerre Schmidt Description Technical report on fish and fish populations. Rambøll Danmark A/S DK reg.no. 35128417 Member of FRI Ramboll - THOR oWF TABLE OF CONTENTS 1. Summary 4 2. Introduction 6 2.1 Background 6 3. Project Plan 7 3.1 Turbines 8 3.2 Foundations 8 3.3 Export cables 8 4. Methods And Materials 9 4.1 Geophysical survey 9 4.1.1 Depth 10 4.1.2 Seabed sediment type characterization 10 4.2 Fish survey 11 4.2.1 Sampling method 12 4.2.2 Analysis of catches 13 5. Baseline Situation 15 5.1 Description of gross area of Thor OWF 15 5.1.1 Water depth 15 5.1.2 Seabed sediment 17 5.1.3 Protected species and marine habitat types 17 5.2 Key species 19 5.2.1 Cod (Gadus morhua L.) 20 5.2.2 European plaice (Pleuronectes platessa L.) 20 5.2.3 Sole (Solea solea L.) 21 5.2.4 Turbot (Psetta maxima L.) 21 5.2.5 Dab (Limanda limanda) 22 5.2.6 Solenette (Buglossidium luteum) 22 5.2.7 Herring (Clupea harengus) 22 5.2.8 Sand goby (Pomatoschistus minutus) 22 5.2.9 Sprat (Sprattus sprattus L.) 23 5.2.10 Sandeel (Ammodytes marinus R. -
Marine Fishes from Galicia (NW Spain): an Updated Checklist
1 2 Marine fishes from Galicia (NW Spain): an updated checklist 3 4 5 RAFAEL BAÑON1, DAVID VILLEGAS-RÍOS2, ALBERTO SERRANO3, 6 GONZALO MUCIENTES2,4 & JUAN CARLOS ARRONTE3 7 8 9 10 1 Servizo de Planificación, Dirección Xeral de Recursos Mariños, Consellería de Pesca 11 e Asuntos Marítimos, Rúa do Valiño 63-65, 15703 Santiago de Compostela, Spain. E- 12 mail: [email protected] 13 2 CSIC. Instituto de Investigaciones Marinas. Eduardo Cabello 6, 36208 Vigo 14 (Pontevedra), Spain. E-mail: [email protected] (D. V-R); [email protected] 15 (G.M.). 16 3 Instituto Español de Oceanografía, C.O. de Santander, Santander, Spain. E-mail: 17 [email protected] (A.S); [email protected] (J.-C. A). 18 4Centro Tecnológico del Mar, CETMAR. Eduardo Cabello s.n., 36208. Vigo 19 (Pontevedra), Spain. 20 21 Abstract 22 23 An annotated checklist of the marine fishes from Galician waters is presented. The list 24 is based on historical literature records and new revisions. The ichthyofauna list is 25 composed by 397 species very diversified in 2 superclass, 3 class, 35 orders, 139 1 1 families and 288 genus. The order Perciformes is the most diverse one with 37 families, 2 91 genus and 135 species. Gobiidae (19 species) and Sparidae (19 species) are the 3 richest families. Biogeographically, the Lusitanian group includes 203 species (51.1%), 4 followed by 149 species of the Atlantic (37.5%), then 28 of the Boreal (7.1%), and 17 5 of the African (4.3%) groups. We have recognized 41 new records, and 3 other records 6 have been identified as doubtful. -
Wgibar 2018 Report
WGIBAR 2018 REPORT ICES INTEGRATED ECOSYSTEM ASSESSMENTS STEERING GROUP ICES CM 2018/IEASG:04 REF ACOM AND SCICOM Interim Report of the Working Group on the In- tegrated Assessments of the Barents Sea (WGIBAR) 9-12 March 2018 Tromsø, Norway International Council for the Exploration of the Sea Conseil International pour l’Exploration de la Mer H.C. Andersens Boulevard 44–46 DK-1553 Copenhagen V Denmark Telephone (+45) 33 38 67 00 Telefax (+45) 33 93 42 15 www.ices.dk [email protected] Recommended format for purposes of citation: ICES. 2018. Interim Report of the Working Group on the Integrated Assessments of the Barents Sea (WGIBAR). WGIBAR 2018 REPORT 9-12 March 2018. Tromsø, Norway. ICES CM 2018/IEASG:04. 210 pp. https://doi.org/10.17895/ices.pub.8267 The material in this report may be reused using the recommended citation. ICES may only grant usage rights of information, data, images, graphs, etc. of which it has owner- ship. For other third-party material cited in this report, you must contact the original copyright holder for permission. For citation of datasets or use of data to be included in other databases, please refer to the latest ICES data policy on the ICES website. All ex- tracts must be acknowledged. For other reproduction requests please contact the Gen- eral Secretary. This document is the product of an Expert Group under the auspices of the International Council for the Exploration of the Sea and does not necessarily represent the view of the Council. © 2018 International Council for the Exploration of the Sea Contents Executive summary ............................................................................................................... -
Length-Weight Relationships of Marine Fish Collected from Around the British Isles
Science Series Technical Report no. 150 Length-weight relationships of marine fish collected from around the British Isles J. F. Silva, J. R. Ellis and R. A. Ayers Science Series Technical Report no. 150 Length-weight relationships of marine fish collected from around the British Isles J. F. Silva, J. R. Ellis and R. A. Ayers This report should be cited as: Silva J. F., Ellis J. R. and Ayers R. A. 2013. Length-weight relationships of marine fish collected from around the British Isles. Sci. Ser. Tech. Rep., Cefas Lowestoft, 150: 109 pp. Additional copies can be obtained from Cefas by e-mailing a request to [email protected] or downloading from the Cefas website www.cefas.defra.gov.uk. © Crown copyright, 2013 This publication (excluding the logos) may be re-used free of charge in any format or medium for research for non-commercial purposes, private study or for internal circulation within an organisation. This is subject to it being re-used accurately and not used in a misleading context. The material must be acknowledged as Crown copyright and the title of the publication specified. This publication is also available at www.cefas.defra.gov.uk For any other use of this material please apply for a Click-Use Licence for core material at www.hmso.gov.uk/copyright/licences/ core/core_licence.htm, or by writing to: HMSO’s Licensing Division St Clements House 2-16 Colegate Norwich NR3 1BQ Fax: 01603 723000 E-mail: [email protected] 3 Contents Contents 1. Introduction 5 2. -
399 4. Bibliography
click for previous page 399 4. BIBLIOGRAPHY Alcock, A., 1889. Natural history notes from H.M. Indian Marine Survey Steamer “Investigator”, Commander Alfred Carpenter, R.N., D.S.O., commanding No. 13. On the bathybial fishes of the Bay of Bengal and neighboring waters, obtained during the seasons 1885-1889. Ann.Mag.Nat.Hist., ser. 6,6(23):376-399 .................., 1891. On the deep-sea fishes collected by the “Investigator” in 1890-1891. Ann.Mag.Nat.Hist., ser. 6,8:16-34; 119-138, pls vii-viii .................., 1899. A descriptive catalogue of the Indian deep-sea fishes in the Indian Museum. Being a revised account of the deep-sea fishes collected by the Royal Indian Marine Survey ship Investigator. Calcutta, Indian Museum, 211 pp. Allen, M.J. & G.8. Smith, 1988. Atlas and zoogeography of common fishes in the Bering Sea and Northeastern Pacific. NOAA Tech.Rep. NMFS, 66: 151 pp. Altukhov, K.A., 1979. O razmnozheznii i razvitii saiki Boreogadus saida (Lepechin) v Belom More. (The reproduction and development of the Arctic cod, Boreogadus saida, in the White Sea.) Vopr.lkhtiol.. 19(5):874-82 (J.Ichthyol., 19(5):93-101) Amaoka, K. et al. (eds), 1983. Fishes from the north-eastern Sea of Japan and the Okhotsk Sea off Hokkaido. Japan Fisheries Resource Conservation Association. Tokyo. 371 pp. Andriashev, A.P., 1954. Fishes of the northern seas of the USSR. Keys to the fauna of the USSR. Zool.lnst.USSR Acad.Sci., 53. Moscow-Leningrad, 617 p. (Transl. for Smithsonian Inst. and Nat.Sci.Found., by Israel Program for Sci.Transl., 1964) ...................., 1965. -
Taxonomy, Distribution and Evolution of Trisopterine Gadidae by Means of Otoliths and Other Characteristics
fishes Article Taxonomy, Distribution and Evolution of Trisopterine Gadidae by Means of Otoliths and Other Characteristics Pieter A. M. Gaemers Joost van den Vondelstraat 30, 7103 XW Winterswijk, The Netherlands; [email protected]; Tel.: +31-543-750383 Academic Editor: Eric Hallerman Received: 1 April 2016; Accepted: 7 July 2016; Published: 17 July 2017 Abstract: In a greater study of the recent fossil Gadidae, the object of this paper is to better define the trisopterine species and their relationships. The taxonomy of the four recent species usually included in the genus Trisopterus is further elaborated by means of published and new data on their otoliths, by published data on general external features and meristics of the fishes, and their genetics. Fossil otoliths, from the beginning of the Oligocene up to the present, reveal much of their evolution and throw more light on their relationships. Several succeeding and partly overlapping lineages representing different genera are recognized during this time interval. The genus Neocolliolus Gaemers, 1976, for Trisopterus esmarkii (Nilsson, 1855), is more firmly based. A new genus, Allotrisopterus, is introduced for Trisopterus minutus (Linnaeus, 1758). The similarity with Trisopterus capelanus (Lacepède, 1800) is an example of convergent evolution. The tribe Trisopterini Endo (2002) should only contain Trisopterus, Allotrisopterus and Neocolliolus as recent genera. Correct identification of otoliths from fisheries research and from sea bottom samples extends the knowledge of the present day geographical distribution of T. capelanus and T. luscus (Linnaeus, 1758). T. capelanus is also living along the Atlantic coast of Portugal and at least up to and including the Ría de Arosa, Galicia, Spain. -
Response to Changing Oceanography in the Dove Time Series: a Northumberland Plankton Community Study
Response to Changing Oceanography in the Dove Time Series: a Northumberland Plankton Community Study Malcolm Charles Baptie Submitted for Doctor of Philosophy School of Marine Science and Technology November 2013 Abstract The Dove Time Series is a plankton monitoring station in the Northumberland coastal sea which has been sampled since 1969. Over the 20th century, major changes have occurred in the North Sea plankton which have in part correlated with oscillation in atmospheric mass over the Northern Hemisphere, the North Atlantic Oscillation (NAO). Westerly winds when the NAO is positive phase block northern low pressure systems and transport warm Atlantic water into the North Sea extending stratification, leading to greater phytoplankton biomass. Phytoplankton biomass in the central North Sea reached a sustained higher level after 1985. Phytoplankton, zooplankton and ichthyoplankton datasets were created or extended from the Dove Time Series to study the effect of oceanographic change at this location. There was a change to a high abundance community 10 years later, in 1995. The most important predictor of phytoplankton abundance was not the NAO index, but the Atlantic Meridional Oscillation (AMO), which exhibits 60-100 year and subordinate 11 and 14 year periodicity, describing a deviation from the long term sea surface temperature (SST) mean in the North Atlantic. Phytoplankton periodicity partly matched the 14 year period in the AMO, which correlates with a feedback mechanism of westerly versus northerly wind in the North Atlantic, regulating ocean-atmosphere heat flux. Zooplankton abundance was predicted by SST and ratio of maximum to minimum abundance by phytoplankton/AMO. Oceanographic conditions that were contemporary with the state of the AMO anomaly after 1995 promoted higher spring phytoplankton abundance and neritic copepod abundance peaks. -
Fish and Fisheries, 8(3): 241–268
ENERGY WORKING FOR BRITAIN FOR WORKING ENERGY Wylfa Newydd Project 6.4.86 ES Volume D - WNDA Development App D13-4 - Fish Surveys Report PINS Reference Number: EN010007 Application Reference Number: 6.4.86 June 2018 Revision 1.0 Regulation Number: 5(2)(a) Planning Act 2008 Infrastructure Planning (Applications: Prescribed Forms and Procedure) Regulations 2009 Horizon Internal DCRM Number: WN0902-JAC-PAC-APP-00166 [This page is intentionally blank] . Wylfa Newydd Project Horizon Nuclear Power Wylfa Limited Fish Survey Report 60PO8007/AQE/REP/003 | 4 26 May 2017 WN03.01.01-S5-PAC-REP-00021 Fish Sur vey R eport Horizon N uclear Power Wylfa Li mited Fish Survey Report Wylfa Newydd Project Project no: 60PO8032 Document title: Fish Survey Report Document No.: 60PO8007/AQE/REP/003 Revision: 4 Date: 26 May 2017 Client name: Horizon Nuclear Power Wylfa Limited Client no: WN03.01.01-S5-PAC-REP-00021 Project manager: Robert Bromley Author: M. Doggett, C. Trigg & H.Young Jacobs U.K. Limited Kenneth Dibben House Enterprise Road, Southampton Science Park Chilworth, Southampton SO16 7NS United Kingdom T +44 (0)23 8011 1250 F +44 (0)23 8011 1251 www.jacobs.com © Copyright 2018 Jacobs U.K. Limited. The concepts and information contained in this document are the property of Jacobs. Use or copying of this document in whole or in part without the written permission of Jacobs constitutes an infringement of copyright. Limitation: This report has been prepared on behalf of, and for the exclusive use of Jacobs’ Client, and is subject to, and issued in accordance with, the provisions of the contract between Jacobs and the Client. -
Otolith Stratigraphy of Late Weichselian and Holocene Sediments of Malangsdjupet, Off Northem Norway
Otolith stratigraphy of Late Weichselian and Holocene sediments of Malangsdjupet, off northem Norway PIETER A. M. GAEMERS & TORE O. VORREN Gaemers, P. A. M. & Vorren, T. 0.: Otolith stratigraphy of Late Weichselian and Holocene sediments of Malangsdjupet, off northern Norway. Norsk Geologisk Tidsskrift, Vol. 65, pp 187-199. Oslo 1985. ISSN 0029-196X. Otoliths of eleven fish species have been identified in cores recovered from the trough Malangsdjupet (dose to 70°N) on the Norwegian continental shelf. The codfish family (Gadidae) dominates with eight species. Three acmc-zones bclonging to the Mer/angius merlangus Lineage-Zone are establishcd: the Boreogadus sp. Acme-Zone (about 15,000 or 14,000 to 10,000 years B. P.), the Neocolliolus esmarki Acme-Zone (10,000 to 7,800 years B. P.) and the Micromesistius poutassou Acme-Zone (7,800B. P. to present). The Boreogadus sp. Acme-Zone reflects an arctic environment while the two others reflect boreal conditions. The M. poutassou Acme-Zone represents a more oceanic environment than the carly Holocene N. esmarki Acme-Zone. P. A. M. Gaemers, Rijksmuseum van Geologie en Mineralogie, Hooglandse Kerkgracht 17, 2312 HS Leiden, the Netherlands. T. O. Vorren, Institute of Biology and Geology, University of Tromsø, P. O. Box 3085 Guleng, N-9001 Tromsø, Norway. Studies of otoliths from the present sea floor and Material and methods the youngest Quaternary sediments are few in number. Jensen (1905) described otoliths from Twenty-seven gravity cores (diameter 100 mm) an area between Jan Mayen, Iceland and the from ten stations (Fig. lB) were investigated for Faroes, and many years later Wigley & Stinton otoliths. -
European Fisheries Ecosystem Plan
European Fisheries Ecosystem Plan The North Sea significant web European Fisheries Ecosystem Plan: The North Sea significant web EU Project number: Q5RS-2001-016585 DELIVERABLE THREE S.Á. Ragnarsson and A. Jaworski Marine Research Institute, Iceland O.A.L. Paramor and C.L. Scott Dove Marine Laboratory, School of Marine Science and Technology, University of Newcastle, UK G. Piet Netherlands Institute for Fisheries Research, The Netherlands L. Hill Instituto Português de Investigação das Pescas e do Mar, Portugal ISBN 0-7017-0169-2 Authors: Stefan Aki Ragnarsson Marine Research Institute, Skulagata 4, P.O. Box 1390, 121 Reykjavik, ICELAND. e-mail: [email protected] Andrzej Jaworski Marine Research Institute, Skulagata 4, P.O. Box 1390, 121 Reykjavik, ICELAND. e-mail: [email protected] Catherine Scott Dove Marine Laboratory, School of Marine Science and Technology, University of Newcastle, Cullercoats, NE30 4PZ, UK. e-mail: [email protected] Odette Paramor Dove Marine Laboratory, School of Marine Science and Technology, University of Newcastle, Cullercoats, NE30 4PZ, UK. e-mail: [email protected] Gerjan Piet Netherlands Institute for Fisheries Research, Dept. Biology and Ecology, Haringkade 1, P.O. Box 68 1970 AB Ijmuiden, THE NETHERLANDS. e-mail: [email protected] Louize Hill Instituto Português de Investigação das Pescas e do Mar, Avenida da Brasilia, PT-1449-006, Lisboa, PORTUGAL. e-mail: [email protected] EUROPEAN FISHERIES ECOSYSTEM PLAN Preface This report describes the selection of the species and habitats which form the ‘significant web’ in the North Sea as a contribution to the development of a European Fisheries Ecosystem Plan (EFEP) (EU Project number Q5RS-2001- 01685).