The Genetic Relationship Between Paroxysmal Movement Disorders and Epilepsy
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Spinocerebellar Ataxia Genetic Testing
Lab Management Guidelines V1.0.2020 Spinocerebellar Ataxia Genetic Testing MOL.TS.311.A v1.0.2020 Introduction Spinocerebellar ataxia (SCA) genetic testing is addressed by this guideline. Procedures addressed The inclusion of any procedure code in this table does not imply that the code is under management or requires prior authorization. Refer to the specific Health Plan's procedure code list for management requirements. Procedures addressed by this Procedure codes guideline ATXN1 gene analysis, evaluation to detect 81178 abnormal (eg,expanded) allele ATXN2 gene analysis, evaluation to detect 81179 abnormal (eg,expanded) allele ATXN3 gene analysis, evaluation to detect 81180 abnormal (eg,expanded) allele ATXN7 gene analysis, evaluation to detect 81181 abnormal (eg,expanded) allele ATXN8 gene analysis, evaluation to detect 81182 abnormal (eg, expanded) alleles ATXN10 gene analysis, evaluation to 81183 detect abnormal (eg, expanded) alleles CACNA1A gene analysis; evaluation to 81184 detect abnormal (eg, expanded) alleles CACNA1A gene analysis; full gene 81185 sequence CACNA1A gene analysis; known familial 81186 variant PPP2R2B gene analysis, evaluation to 81343 detect abnormal (eg, expanded) alleles TBP gene analysis, evaluation to detect 81344 abnormal (eg, expanded) alleles Unlisted molecular pathology procedure 81479 © 2020 eviCore healthcare. All Rights Reserved. 1 of 15 400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com Lab Management Guidelines V1.0.2020 What is spinocerebellar ataxia Definition Spinocerebrallar ataxias (SCA) are a group of autosomal dominant ataxias that have a range of phenotypes. There are various subtypes of SCA, which are denoted by numbers (e.g. SCA1, SCA3, etc.) Incidence and Prevalence The prevalence of autosomal dominant cerebellar ataxias, as a whole, is 1-5:100,000.1 SCA3 is the most common autosomal dominant form of ataxia. -
PRRT2 Gene and Protein in Human: Characteristics, Evolution and Function Yinchao Li1, Shuda Chen1, Chengzhe Wang1, Peiling Wang1,Xili1 and Liemin Zhou1,2*
Li et al. Acta Epileptologica (2021) 3:7 https://doi.org/10.1186/s42494-021-00042-4 Acta Epileptologica RESEARCH Open Access PRRT2 gene and protein in human: characteristics, evolution and function Yinchao Li1, Shuda Chen1, Chengzhe Wang1, Peiling Wang1,XiLi1 and Liemin Zhou1,2* Abstract Background: This study was designed to characterize human PRRT2 gene and protein, in order to provide theoretical reference for research on regulation of PRRT2 expression and its involvement in the pathogenesis of paroxysmal kinesigenic dyskinesia and other related diseases. Method: Biological softwares Protparam, Protscale, MHMM, SignalP 5.0, NetPhos 3.1, Swiss-Model, Promoter 2.0, AliBaba2.1 and EMBOSS were used to analyze the sequence characteristics, transcription factors of human PRRT2 and their binding sites in the promoter region of the gene, as well as the physicochemical properties, signal peptides, hydrophobicity property, transmembrane regions, protein structure, interacting proteins and functions of PRRT2 protein. Results: (1) Evolutionary analysis of PRRT2 protein showed that the human PRRT2 had closest genetic distance from Pongo abelii. (2) The human PRRT2 protein was an unstable hydrophilic protein located on the plasma membrane. (3) The forms of random coil (67.65%) and alpha helix (23.24%) constituted the main secondary structure elements of PRRT2 protein. There were also multiple potential phosphorylation sites in the protein. (4) The results of ontology analysis showed that the cellular component of PRRT2 protein was located in the plasma membrane; the molecular function of PRRT2 included syntaxin-1 binding and SH3 domain binding; the PRRT2 protein is involved in biological processes of negative regulation of soluble NSF attachment protein receptor (SNAR E) complex assembly and calcium-dependent activation of synaptic vesicle fusion. -
Regulation of Skeletal Muscle Glucose Transport and Glucose Metabolism by Exercise Training
nutrients Review Regulation of Skeletal Muscle Glucose Transport and Glucose Metabolism by Exercise Training Parker L. Evans 1,2,3, Shawna L. McMillin 1,2,3 , Luke A. Weyrauch 1,2,3 and Carol A. Witczak 1,2,3,4,* 1 Department of Kinesiology, East Carolina University, Greenville, NC 27858, USA; [email protected] (P.L.E.); [email protected] (S.L.M.); [email protected] (L.A.W.) 2 Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA 3 East Carolina Diabetes & Obesity Institute, East Carolina University, Greenville, NC 27834, USA 4 Department of Biochemistry & Molecular Biology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA * Correspondence: [email protected]; Tel.: +1-252-744-1224 Received: 8 September 2019; Accepted: 8 October 2019; Published: 12 October 2019 Abstract: Aerobic exercise training and resistance exercise training are both well-known for their ability to improve human health; especially in individuals with type 2 diabetes. However, there are critical differences between these two main forms of exercise training and the adaptations that they induce in the body that may account for their beneficial effects. This article reviews the literature and highlights key gaps in our current understanding of the effects of aerobic and resistance exercise training on the regulation of systemic glucose homeostasis, skeletal muscle glucose transport and skeletal muscle glucose metabolism. Keywords: aerobic exercise; blood glucose; functional overload; GLUT; hexokinase; insulin resistance; resistance exercise; SGLT; type 2 diabetes; weightlifting 1. Introduction Exercise training is defined as planned bouts of physical activity which repeatedly occur over a duration of time lasting from weeks to years. -
Amino Acid Disorders 105
AMINO ACID DISORDERS 105 Massaro, A. S. (1995). Trypanosomiasis. In Guide to Clinical tions in biological fluids relatively easy. These Neurology (J. P. Mohrand and J. C. Gautier, Eds.), pp. 663– analyzers separate amino acids either by ion-ex- 667. Churchill Livingstone, New York. Nussenzweig, V., Sonntag, R., Biancalana, A., et al. (1953). Ac¸a˜o change chromatography or by high-pressure liquid de corantes tri-fenil-metaˆnicos sobre o Trypanosoma cruzi in chromatography. The results are plotted as a graph vitro: Emprego da violeta de genciana na profilaxia da (Fig. 1). The concentration of each amino acid can transmissa˜o da mole´stia de chagas por transfusa˜o de sangue. then be calculated from the size of the corresponding O Hospital (Rio de Janeiro) 44, 731–744. peak on the graph. Pagano, M. A., Segura, M. J., DiLorenzo, G. A., et al. (1999). Cerebral tumor-like American trypanosomiasis in Most amino acid disorders can be diagnosed by acquired immunodeficiency syndrome. Ann. Neurol. 45, measuring the concentrations of amino acids in 403–406. blood plasma; however, some disorders of amino Rassi, A., Trancesi, J., and Tranchesi, B. (1982). Doenc¸ade acid transport are more easily recognized through the Chagas. In Doenc¸as Infecciosas e Parasita´rias (R. Veroesi, Ed.), analysis of urine amino acids. Therefore, screening 7th ed., pp. 674–712. Guanabara Koogan, Sa˜o Paulo, Brazil. Spina-Franc¸a, A., and Mattosinho-Franc¸a, L. C. (1988). for amino acid disorders is best done using both South American trypanosomiasis (Chagas’ disease). In blood and urine specimens. Occasionally, analysis of Handbook of Clinical Neurology (P. -
PRRT2 Gene Proline Rich Transmembrane Protein 2
PRRT2 gene proline rich transmembrane protein 2 Normal Function The PRRT2 gene provides instructions for making the proline-rich transmembrane protein 2 (PRRT2). The function of this protein is unknown, although it is thought to be involved in signaling in the brain. Studies show that it interacts with another protein called SNAP25, which is involved in signaling between nerve cells (neurons) in the brain. SNAP25 helps control the release of neurotransmitters, which are chemicals that relay signals from one neuron to another. Health Conditions Related to Genetic Changes Familial hemiplegic migraine At least two mutations in the PRRT2 gene have been identified in people with familial hemiplegic migraine. This condition is characterized by migraine headaches with a pattern of neurological symptoms known as aura. In familial hemiplegic migraine, the aura includes temporary numbness or weakness on one side of the body (hemiparesis). One PRRT2 gene mutation that is found in multiple people with familial hemiplegic migraine inserts an extra DNA building block (nucleotide) in the gene. (This change is written as 649dupC.) Both known mutations alter the blueprint used for making the protein and lead to production of an abnormally short PRRT2 protein that is quickly broken down. As a result, affected individuals have a shortage of PRRT2 protein. Researchers speculate that this shortage affects the function of the SNAP25 protein, leading to abnormal signaling between neurons, although the mechanism that causes familial hemiplegic migraine is unknown. It is thought that the changes in signaling in the brain lead to development of the severe headaches characteristic of the disorder. Familial paroxysmal kinesigenic dyskinesia More than 10 mutations in the PRRT2 gene have been found to cause a neurological disorder called familial paroxysmal kinesigenic dyskinesia. -
Inherited Renal Tubulopathies—Challenges and Controversies
G C A T T A C G G C A T genes Review Inherited Renal Tubulopathies—Challenges and Controversies Daniela Iancu 1,* and Emma Ashton 2 1 UCL-Centre for Nephrology, Royal Free Campus, University College London, Rowland Hill Street, London NW3 2PF, UK 2 Rare & Inherited Disease Laboratory, London North Genomic Laboratory Hub, Great Ormond Street Hospital for Children National Health Service Foundation Trust, Levels 4-6 Barclay House 37, Queen Square, London WC1N 3BH, UK; [email protected] * Correspondence: [email protected]; Tel.: +44-2381204172; Fax: +44-020-74726476 Received: 11 February 2020; Accepted: 29 February 2020; Published: 5 March 2020 Abstract: Electrolyte homeostasis is maintained by the kidney through a complex transport function mostly performed by specialized proteins distributed along the renal tubules. Pathogenic variants in the genes encoding these proteins impair this function and have consequences on the whole organism. Establishing a genetic diagnosis in patients with renal tubular dysfunction is a challenging task given the genetic and phenotypic heterogeneity, functional characteristics of the genes involved and the number of yet unknown causes. Part of these difficulties can be overcome by gathering large patient cohorts and applying high-throughput sequencing techniques combined with experimental work to prove functional impact. This approach has led to the identification of a number of genes but also generated controversies about proper interpretation of variants. In this article, we will highlight these challenges and controversies. Keywords: inherited tubulopathies; next generation sequencing; genetic heterogeneity; variant classification. 1. Introduction Mutations in genes that encode transporter proteins in the renal tubule alter kidney capacity to maintain homeostasis and cause diseases recognized under the generic name of inherited tubulopathies. -
Episodic Ataxias
REVIEW ARTICLE http://dx.doi.org/10.14802/jmd.16028 / J Mov Disord 2016;9(3):129-135 pISSN 2005-940X / eISSN 2093-4939 Episodic Ataxias: ABSTRACT Episodic ataxia (EA) is a clinically heterogeneous group of disorders that are characterized by recur- Clinical and Genetic rent spells of truncal ataxia and incoordination last- ing minutes to hours. Most have an autosomal do- minant inheritance pattern. To date, 8 subtypes Features have been defined according to clinical and genet- ic characteristics, and five genes are known to be linked to EAs. Both EA1 and EA2, which are caus- ed by mutations in KCNA1 and CACNA1A, account Kwang-Dong Choi,1 Jae-Hwan Choi2 for the majority of EA, but many patients with no identified mutations still exhibit EA-like clinical fea- 1 Department of Neurology, College of Medicine, Pusan National University Hospital, tures. Furthermore, genetically confirmed EAs have Pusan National University School of Medicine and Biomedical Research Institute, Busan, Korea mostly been identified in Caucasian families. In this 2Department of Neurology, Pusan National University School of Medicine, article, we review the current knowledge on the Research Institute for Convergence of Biomedical Science and Technology, clinical and genetic characteristics of EAs. Addition- Pusan National University Yangsan Hospital, Yangsan, Korea ally, we summarize the phenotypic features of the genetically confirmed EA2 families in Korea. Key Words Episodic ataxia; KCNA1; CACNA1A. Received: June 30, 2016 Revised: July 25, 2016 Accepted: August 1, -
Review of Hair Cell Synapse Defects in Sensorineural Hearing Impairment
Otology & Neurotology 34:995Y1004 Ó 2013, Otology & Neurotology, Inc. Review of Hair Cell Synapse Defects in Sensorineural Hearing Impairment *†‡Tobias Moser, *Friederike Predoehl, and §Arnold Starr *InnerEarLab, Department of Otolaryngology, University of Go¨ttingen Medical School; ÞSensory Research Center SFB 889, þBernstein Center for Computational Neuroscience, University of Go¨ttingen, Go¨ttingen, Germany; and §Department of Neurology, University of California, Irvine, California, U.S.A. Objective: To review new insights into the pathophysiology of are similar to those accompanying auditory neuropathy, a group sensorineural hearing impairment. Specifically, we address defects of genetic and acquired disorders of spiral ganglion neurons. of the ribbon synapses between inner hair cells and spiral ganglion Genetic auditory synaptopathies include alterations of glutamate neurons that cause auditory synaptopathy. loading of synaptic vesicles, synaptic Ca2+ influx or synaptic Data Sources and Study Selection: Here, we review original vesicle turnover. Acquired synaptopathies include noise-induced publications on the genetics, animal models, and molecular hearing loss because of excitotoxic synaptic damage and subse- mechanisms of hair cell ribbon synapses and their dysfunction. quent gradual neural degeneration. Alterations of ribbon synapses Conclusion: Hair cell ribbon synapses are highly specialized to likely also contribute to age-related hearing loss. Key Words: enable indefatigable sound encoding with utmost temporal precision. GeneticsVIon -
Targeted Genomic Sequencing Identifies PRRT2 Mutations As A
New loci J Med Genet: first published as 10.1136/jmedgenet-2011-100635 on 30 November 2011. Downloaded from SHORT REPORT Targeted genomic sequencing identifies PRRT2 mutations as a cause of paroxysmal kinesigenic choreoathetosis Jingyun Li,1 Xilin Zhu,1 Xin Wang,1 Wei Sun,2 Bing Feng,3 Te Du,1 Bei Sun,1 Fenghe Niu,1 Hua Wei,2 Xiaopan Wu,1 Lei Dong,1 Liping Li,2 Xingqiu Cai,4 Yuping Wang,2 Ying Liu1 < Additional figure and tables ABSTRACT characterised by recurrent and brief attacks of are published online only. To Background Paroxysmal kinesigenic choreoathetosis involuntary movement.1 Familial and sporadic view these files please visit the (PKC) is characterised by recurrent and brief attacks of cases have been described. Familial PKC usually journal online (http://jmg.bmj. com/content/49/2.toc). involuntary movement, inherited as an autosomal shows an autosomal dominant inheritance pattern dominant trait with incomplete penetrance. A PKC locus with incomplete penetrance. 1State Key Laboratory of Medical Molecular Biology, has been previously mapped to the pericentromeric We previously performed linkage and haplotype Institute of Basic Medical region of chromosome 16 (16p11.2-q12.1), but the analysis in four Chinese families (family 2 and Sciences, Chinese Academy of causative gene remains unidentified. family 4 with incomplete penetrance) with similar Medical Sciences; School of Methods/results Deep sequencing of this 30 Mb region choreoathetosis clinical symptoms, and all mapped Basic Medicine, Peking Union enriched with array capture in five affected individuals the disease locus to a region between D16S3093 and Medical College, Beijing, China 2 3 2Department of Neurology, from four Chinese PKC families detected two D16S3057 at 16p11.2-q12.1. -
WES Gene Package Multiple Congenital Anomalie.Xlsx
Whole Exome Sequencing Gene package Multiple congenital anomalie, version 5, 1‐2‐2018 Technical information DNA was enriched using Agilent SureSelect Clinical Research Exome V2 capture and paired‐end sequenced on the Illumina platform (outsourced). The aim is to obtain 8.1 Giga base pairs per exome with a mapped fraction of 0.99. The average coverage of the exome is ~50x. Duplicate reads are excluded. Data are demultiplexed with bcl2fastq Conversion Software from Illumina. Reads are mapped to the genome using the BWA‐MEM algorithm (reference: http://bio‐bwa.sourceforge.net/). Variant detection is performed by the Genome Analysis Toolkit HaplotypeCaller (reference: http://www.broadinstitute.org/gatk/). The detected variants are filtered and annotated with Cartagenia software and classified with Alamut Visual. It is not excluded that pathogenic mutations are being missed using this technology. At this moment, there is not enough information about the sensitivity of this technique with respect to the detection of deletions and duplications of more than 5 nucleotides and of somatic mosaic mutations (all types of sequence changes). HGNC approved Phenotype description including OMIM phenotype ID(s) OMIM median depth % covered % covered % covered gene symbol gene ID >10x >20x >30x A4GALT [Blood group, P1Pk system, P(2) phenotype], 111400 607922 101 100 100 99 [Blood group, P1Pk system, p phenotype], 111400 NOR polyagglutination syndrome, 111400 AAAS Achalasia‐addisonianism‐alacrimia syndrome, 231550 605378 73 100 100 100 AAGAB Keratoderma, palmoplantar, -
The Genetic Landscape of the Human Solute Carrier (SLC) Transporter Superfamily
Human Genetics (2019) 138:1359–1377 https://doi.org/10.1007/s00439-019-02081-x ORIGINAL INVESTIGATION The genetic landscape of the human solute carrier (SLC) transporter superfamily Lena Schaller1 · Volker M. Lauschke1 Received: 4 August 2019 / Accepted: 26 October 2019 / Published online: 2 November 2019 © The Author(s) 2019 Abstract The human solute carrier (SLC) superfamily of transporters is comprised of over 400 membrane-bound proteins, and plays essential roles in a multitude of physiological and pharmacological processes. In addition, perturbation of SLC transporter function underlies numerous human diseases, which renders SLC transporters attractive drug targets. Common genetic polymorphisms in SLC genes have been associated with inter-individual diferences in drug efcacy and toxicity. However, despite their tremendous clinical relevance, epidemiological data of these variants are mostly derived from heterogeneous cohorts of small sample size and the genetic SLC landscape beyond these common variants has not been comprehensively assessed. In this study, we analyzed Next-Generation Sequencing data from 141,456 individuals from seven major human populations to evaluate genetic variability, its functional consequences, and ethnogeographic patterns across the entire SLC superfamily of transporters. Importantly, of the 204,287 exonic single-nucleotide variants (SNVs) which we identifed, 99.8% were present in less than 1% of analyzed alleles. Comprehensive computational analyses using 13 partially orthogonal algorithms that predict the functional impact of genetic variations based on sequence information, evolutionary conserva- tion, structural considerations, and functional genomics data revealed that each individual genome harbors 29.7 variants with putative functional efects, of which rare variants account for 18%. Inter-ethnic variability was found to be extensive, and 83% of deleterious SLC variants were only identifed in a single population. -
The Frequency of Seizures with Roseola. the Study Corroborates the Suggestion That Seizures with Roseola, HHV-6, and Fever Are Not Always Simple in Type
the frequency of seizures with roseola. The study corroborates the suggestion that seizures with roseola, HHV-6, and fever are not always simple in type. They are frequently prolonged, recurrent, and complex, and sometimes a manifestation of encephalitis or encephalopathy. (Progress in Pediatric Neurology II. Millichap JG, Ed, PNB Publ, 1994, pp 410, 415). These findings further weaken the hypothesis of the so-called simple febrile seizure as a distinct disease entity. For abstracts from the 16th annual conference on febrile convulsions held in Tokyo, Dec 18, 1993, see Fukuyama Y. Brain Dev July/Aug 1994;16:339-346. Papers included neurochemical aspects, EEG studies, and clinical, epidemiological, and treatment reports. The reputed safety and effectiveness of intermittent oral diazepam (0.4 mg/kg, 3 doses) at times of fever for prevention of recurrence of febrile seizures was supported in 23 children treated at Shimane Medical University and Central Hospital, Japan. GLUTAMATE IN PYRIDOXINE-DEPENDENT EPILEPSY Cerebrospinal fluid levels of glutamate, g-aminobutyric acid, and pyridoxal-5-phosphate examined in a patient with pyridoxine dependency while on and off vitamin B6 treatment are reported from Universitat Munchen, and Universitats-Nervenklinik, Wurzburg, Germany. Seizures began at age 3 weeks. Despite phenobarbital, status epilepticus occurred at 3 months and was followed by infantile spasms and hypsarrhythmia. The addition of ACTH and vitamin B6 controlled the seizures and the EEG became normal. Seizures recurred on each of several occasions when vitamin B6 was withdrawn. CSF glutamate was elevated 200-fold, whereas GABA and PLP were normal. After vitamin B6 (5 mg/kg BW/day) was reintroduced, seizures stopped and the EEG was normal, but CSF glutamate was still elevated 10 fold.