The Oxygen Effect in the Development of Radiosensitizers
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The Roles of Hypoxia-Inducible Factors and Non-Coding Rnas in Gastrointestinal Cancer
G C A T T A C G G C A T genes Review The Roles of Hypoxia-Inducible Factors and Non-Coding RNAs in Gastrointestinal Cancer 1, 1, 2, 1, Hyun-Soo Cho y , Tae-Su Han y, Keun Hur * and Hyun Seung Ban * 1 Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Korea; [email protected] (H.-S.C.); [email protected] (T.H.) 2 Department of Biochemistry and Cell Biology, School of Medicine, Kyungpook National University, Daegu 41944, Korea * Correspondence: [email protected] (K.H.); [email protected] (H.S.B.); Tel.: +82-53-420-4821 (K.H.); +82-42-879-8176 (H.S.B.) These authors contributed equally to this work. y Received: 10 November 2019; Accepted: 2 December 2019; Published: 4 December 2019 Abstract: Hypoxia-inducible factors (HIFs) are transcription factors that play central roles in cellular responses against hypoxia. In most cancers, HIFs are closely associated with tumorigenesis by regulating cell survival, angiogenesis, metastasis, and adaptation to the hypoxic tumor microenvironment. Recently, non-coding RNAs (ncRNAs) have been reported to play critical roles in the hypoxic response in various cancers. Here, we review the roles of hypoxia-response ncRNAs in gastrointestinal cancer, with a particular focus on microRNAs and long ncRNAs, and discuss the functional relationships and regulatory mechanisms between HIFs and ncRNAs. Keywords: hypoxia; non-coding RNA; microRNA; hypoxia-inducible factor; gastrointestinal cancer 1. Introduction Gastrointestinal (GI) cancer is the most common type of cancer and second leading cause of cancer-related death [1]. GI cancer is particularly difficult to treat since it is usually found in an advanced stage. -
I LITERATURE-BASED DISCOVERY of KNOWN and POTENTIAL NEW
LITERATURE-BASED DISCOVERY OF KNOWN AND POTENTIAL NEW MECHANISMS FOR RELATING THE STATUS OF CHOLESTEROL TO THE PROGRESSION OF BREAST CANCER BY YU WANG THESIS Submitted in partial fulfillment of the requirements for the degree of Master of Science in Bioinformatics with a concentration in Library and Information Science in the Graduate College of the University of Illinois at Urbana-Champaign, 2019 Urbana, Illinois Adviser: Professor Vetle I. Torvik Professor Erik Russell Nelson i ABSTRACT Breast cancer has been studied for a long period of time and from a variety of perspectives in order to understand its pathogeny. The pathogeny of breast cancer can be classified into two groups: hereditary and spontaneous. Although cancer in general is considered a genetic disease, spontaneous factors are responsible for most of the pathogeny of breast cancer. In other words, breast cancer is more likely to be caused and deteriorated by the dysfunction of a physical molecule than be caused by germline mutation directly. Interestingly, cholesterol, as one of those molecules, has been discovered to correlate with breast cancer risk. However, the mechanisms of how cholesterol helps breast cancer progression are not thoroughly understood. As a result, this study aims to study known and discover potential new mechanisms regarding to the correlation of cholesterol and breast cancer progression using literature review and literature-based discovery. The known mechanisms are further classified into four groups: cholesterol membrane content, transport of cholesterol, cholesterol metabolites, and other. The potential mechanisms, which are intended to provide potential new treatments, have been identified and checked for feasibility by an expert. -
Association Between Tumor Hypoxia and Malignant Progression in Advanced Cancer of the Uterine Cervix1
(CANCER RHSl-AKCH 56. 45(»-45l5. Octnbcr I. 1996] Association between Tumor Hypoxia and Malignant Progression in Advanced Cancer of the Uterine Cervix1 Michael Höckel,2Karlheinz Schienger, Billur Aral, Margarete Milze, Uwe Schäffer, and Peter Vaupel Department iif Ohsieirics anil üyneciiltiuy /M. H., K. S.. B. A.. U. S.] unti lile Institutes ¡ifPiilholiifty ¡M.M./ und Ph\\inli>K\ ami Paihuiihysii>li>Ky¡P-V.]. University <ifMainz Metileni Schnei. 55/W Mitin:. Genniin\ ABSTRACT ture is evident ( I ). As a consequence, tissue hypoxia results from either insufficient O-, diffusion (chronic hypoxia) or insufficient Experimental tumors contain a significant fraction of microregions that perfusion (acute hypoxia. transient hypoxia. or ischemie hypoxia). are chronically or transiently hvpoxic. Experimental evidence showing Moreover, in vitro and experimental tumor studies showed that that hypoxia (und suhsequent reoxygenation) muy huve a profound impact hypoxia (and subsequent reoxygenation) may have a dramatic on malignant progression and on responsiveness to therapy is growing. I lie clinical relevance of tumor oxygénationin Immun solid malignancies impact on malignant progression in terms of tumor spread and is under ¡mesticatimi. resistance to therapy (2-13). Despite these striking observations in \\ e huve developed and validuted a clinically applicable method for tumor models, the clinical relevance of tumor oxygénation is still measurement of tumor oxygénation in locully udvunced cancer of the unclear. After Thomlinson and Gray (14) presented evidence for uterine cervix using a computerized polarographic electrode system. Ap hypoxic microregions within human tumors from a detailed his- plying this procedure in patients with cervical cancers S3 cm in diameter, topathological study of lung cancers. -
Tanibirumab (CUI C3490677) Add to Cart
5/17/2018 NCI Metathesaurus Contains Exact Match Begins With Name Code Property Relationship Source ALL Advanced Search NCIm Version: 201706 Version 2.8 (using LexEVS 6.5) Home | NCIt Hierarchy | Sources | Help Suggest changes to this concept Tanibirumab (CUI C3490677) Add to Cart Table of Contents Terms & Properties Synonym Details Relationships By Source Terms & Properties Concept Unique Identifier (CUI): C3490677 NCI Thesaurus Code: C102877 (see NCI Thesaurus info) Semantic Type: Immunologic Factor Semantic Type: Amino Acid, Peptide, or Protein Semantic Type: Pharmacologic Substance NCIt Definition: A fully human monoclonal antibody targeting the vascular endothelial growth factor receptor 2 (VEGFR2), with potential antiangiogenic activity. Upon administration, tanibirumab specifically binds to VEGFR2, thereby preventing the binding of its ligand VEGF. This may result in the inhibition of tumor angiogenesis and a decrease in tumor nutrient supply. VEGFR2 is a pro-angiogenic growth factor receptor tyrosine kinase expressed by endothelial cells, while VEGF is overexpressed in many tumors and is correlated to tumor progression. PDQ Definition: A fully human monoclonal antibody targeting the vascular endothelial growth factor receptor 2 (VEGFR2), with potential antiangiogenic activity. Upon administration, tanibirumab specifically binds to VEGFR2, thereby preventing the binding of its ligand VEGF. This may result in the inhibition of tumor angiogenesis and a decrease in tumor nutrient supply. VEGFR2 is a pro-angiogenic growth factor receptor -
UCSD Moores Cancer Center Neuro-Oncology Program
UCSD Moores Cancer Center Neuro-Oncology Program Recent Progress in Brain Tumors 6DQWRVK.HVDUL0'3K' 'LUHFWRU1HXUR2QFRORJ\ 3URIHVVRURI1HXURVFLHQFHV 0RRUHV&DQFHU&HQWHU 8QLYHUVLW\RI&DOLIRUQLD6DQ'LHJR “Brain Cancer for Life” Juvenile Pilocytic Astrocytoma Metastatic Brain Cancer Glioblastoma Multiforme Glioblastoma Multiforme Desmoplastic Infantile Ganglioglioma Desmoplastic Variant Astrocytoma Medulloblastoma Atypical Teratoid Rhabdoid Tumor Diffuse Intrinsic Pontine Glioma -Mutational analysis, microarray expression, epigenetic phenomenology -Age-specific biology of brain cancer -Is there an overlap? ? Neuroimmunology ? Stem cell hypothesis Courtesy of Dr. John Crawford Late Effects Long term effect of chemotherapy and radiation on neurocognition Risks of secondary malignancy secondary to chemotherapy and/or radiation Neurovascular long term effects: stroke, moya moya Courtesy of Dr. John Crawford Importance Increase in aging population with increased incidence of cancer Patients with cancer living longer and developing neurologic disorders due to nervous system relapse or toxicity from treatments Overview Introduction Clinical Presentation Primary Brain Tumors Metastatic Brain Tumors Leptomeningeal Metastases Primary CNS Lymphoma Paraneoplastic Syndromes Classification of Brain Tumors Tumors of Neuroepithelial Tissue Glial tumors (astrocytic, oligodendroglial, mixed) Neuronal and mixed neuronal-glial tumors Neuroblastic tumors Pineal parenchymal tumors Embryonal tumors Tumors of Peripheral Nerves Shwannoma Neurofibroma -
5 Combinations of Hypoxia-Targeting Compounds and Radiation-Activated Prodrugs with Ionizing Radiation
Combinations of Hypoxia-Targeting Compounds and Radiation-Activated Prodrugs with Ionizing Radiation 67 5 Combinations of Hypoxia-Targeting Compounds and Radiation-Activated Prodrugs with Ionizing Radiation G-One Ahn and J. Martin Brown CONTENTS 5.1 Targeting Tumor Hypoxia 5.1 Targeting Tumor Hypoxia 67 5.2 Oxygen-Level Enhancers 68 5.3 Hypoxia-Selective Radiosensitizers 69 Tumor hypoxia was first postulated from histo- 5.3.1 Nitroimidazoles 69 logical studies of human lung adenocarcinomas by 5.3.2 Mixed-Function Radiosensitizers 69 Thomlinson and Gray (1955). They reasoned that, 5.3.3 DNA-Affinic Radiosensitizers 71 because of unrestrained growth, tumor cells are 5.3.4 Limitations of HSR 71 forced away from blood vessels beyond the effec- 5.4 Hypoxic Cytotoxins 72 5.4.1 Introduction 72 tive diffusion distance of oxygen (O2) in respiring 5.4.2 Combination of Hypoxic Cytotoxins with Ionizing tissues, hence becoming hypoxic and eventually Radiation 72 necrotic (Fig. 5.1a). Given the typical values for 5.4.3 Nitroimidazoles 73 intracapillary O2 tensions and consumption rates, 5.4.4 Other Nitroaromatics 73 they calculated that O diffusion distances would 5.4.4.1 CB 1954 73 2 be approximately 150 Pm and this was consistent 5.4.4.2 SN 23862 and PR-104 74 Thomlinson 5.4.4.3 RSU 1069 and RB 6145 74 with their histological observations ( 5.4.5 Quinones 75 and Gray 1955). This type of hypoxia has come to be 5.4.5.1 Mitomycin C 75 termed “chronic,” or “diffusion-limited,” hypoxia. 5.4.5.2 Porfiromycin 75 Acute hypoxia also develops in tumors through 5.4.5.3 EO9 75 temporal (reversible) cessation or reduction of 5.4.6 Benzotriene di-N-Oxides 76 5.4.7 Tertiary Amine N-Oxides 78 tumor blood flow resulting from highly disorga- 5.4.7.1 Nitracrine N-Oxides 78 nized tumor vasculature (Fig. -
Modifications to the Harmonized Tariff Schedule of the United States To
U.S. International Trade Commission COMMISSIONERS Shara L. Aranoff, Chairman Daniel R. Pearson, Vice Chairman Deanna Tanner Okun Charlotte R. Lane Irving A. Williamson Dean A. Pinkert Address all communications to Secretary to the Commission United States International Trade Commission Washington, DC 20436 U.S. International Trade Commission Washington, DC 20436 www.usitc.gov Modifications to the Harmonized Tariff Schedule of the United States to Implement the Dominican Republic- Central America-United States Free Trade Agreement With Respect to Costa Rica Publication 4038 December 2008 (This page is intentionally blank) Pursuant to the letter of request from the United States Trade Representative of December 18, 2008, set forth in the Appendix hereto, and pursuant to section 1207(a) of the Omnibus Trade and Competitiveness Act, the Commission is publishing the following modifications to the Harmonized Tariff Schedule of the United States (HTS) to implement the Dominican Republic- Central America-United States Free Trade Agreement, as approved in the Dominican Republic-Central America- United States Free Trade Agreement Implementation Act, with respect to Costa Rica. (This page is intentionally blank) Annex I Effective with respect to goods that are entered, or withdrawn from warehouse for consumption, on or after January 1, 2009, the Harmonized Tariff Schedule of the United States (HTS) is modified as provided herein, with bracketed matter included to assist in the understanding of proclaimed modifications. The following supersedes matter now in the HTS. (1). General note 4 is modified as follows: (a). by deleting from subdivision (a) the following country from the enumeration of independent beneficiary developing countries: Costa Rica (b). -
Causes and Consequences of Increased Glucose Metabolism of Cancers
Causes and Consequences of Increased Glucose Metabolism of Cancers Robert J. Gillies, Ian Robey, and Robert A. Gatenby University of Arizona, Tucson, Arizona does not appear to be a significant adaptive advantage of using In this review we examine the mechanisms (causes) underlying glycolysis when oxygen is present (the Warburg effect). Yet, the increased glucose consumption observed in tumors within its prevalence in the overwhelming majority of metastatic a teleological context (consequences). In other words, we will tumors is compelling evidence that aerobic glycolysis plays a ask not only ‘‘How do cancers have high glycolysis?’’ but also, very significant role in promoting tumor development. ‘‘Why?’’ We believe that the insights gained from answering the latter question support the conclusion that elevated glucose To address this, the evolutionary dynamics of carcinogen- consumption is a necessary component of carcinogenesis. esis have been modeled using several mathematic methods, Specifically we propose that glycolysis is elevated because it including information theory, evolutionary game theory, produces acid, which provides an evolutionary advantage to reaction–diffusion models, and modified cellular automata cancer cells vis-a-vis` normal parenchyma into which they invade. (2–12). Insights from these models combined with modern Key Words: cancer; glucose; metabolism; carcinogenesis; imaging, what we have termed ‘‘imag(in)ing,’’ have demon- acid-base; somatic evolution strated that hypoxia and acidosis develop inevitably in the J Nucl Med 2008; 49:24S–42S microenvironment of premalignant epithelial tumors, such as DOI: 10.2967/jnumed.107.047258 ductal carcinoma in situ (DCIS). This results from aberrant proliferation that carries cells away from their underlying blood supply, which remains on the opposite side of an in- tact basement membrane (BM). -
Pyruvate Dehydrogenase Kinase As a Potential Therapeutic Target for Malignant Gliomas
REVIEW ARTICLE Brain Tumor Res Treat 2013;1:57-63 / Print ISSN 2288-2405 / Online ISSN 2288-2413 online © ML Comm Pyruvate Dehydrogenase Kinase as a Potential Therapeutic Target for Malignant Gliomas Mithilesh Kumar Jha, Kyoungho Suk Department of Pharmacology, Brain Science & Engineering Institute, Kyungpook National University School of Medicine, Daegu, Korea Metabolic aberrations in the form of altered flux through key metabolic pathways are the major hall- marks of several life-threatening malignancies including malignant gliomas. These adaptations play an important role in the enhancement of the survival and proliferation of gliomas at the expense of the Received August 12, 2013 surrounding normal/healthy tissues. Recent studies in the field of neurooncology have directly targeted Revised August 14, 2013 the altered metabolic pathways of malignant tumor cells for the development of anti-cancer drugs. Accepted September 23, 2013 Aerobic glycolysis due to elevated production of lactate from pyruvate regardless of oxygen availability Correspondence is a common metabolic alteration in most malignancies. Aerobic glycolysis offers survival advantages Kyoungho Suk in addition to generating substrates such as fatty acids, amino acids and nucleotides required for the Department of Pharmacology, rapid proliferation of cells. This review outlines the role of pyruvate dehydrogenase kinase (PDK) in glio- Kyungpook National University mas as an inhibitor of pyruvate dehydrogenase that catalyzes the oxidative decarboxylation of pyru- School of Medicine, vate. An in-depth investigation on the key metabolic enzyme PDK may provide a novel therapeutic ap- 680 Gukchaebosang-ro, Jung-gu, Daegu 700-842, Korea proach for the treatment of malignant gliomas. Tel: +82-53-420-4835 Fax: +82-53-256-1566 Key Words Pyruvate dehydrogenase kinase; Glioma; Gliomagenesis; Dichloroacetate; E-mail: [email protected] Hypoxia-inducible factor. -
Repeated Tumor Oximetry to Identify Therapeutic Window During Metronomic Cyclophosphamide Treatment of 9L Gliomas
ONCOLOGY REPORTS 26: 281-286, 2011 Repeated tumor oximetry to identify therapeutic window during metronomic cyclophosphamide treatment of 9L gliomas SRIRAM MUPPARAJU1,2, HUAGANG HOU1,2, JEAN P. LARIVIERE1, HAROLD SwaRTZ1,2, YOUSSEF JOUNAIDI3 and NADEEM KHAN1,2 1EPR Center for Viable Systems, Dartmouth Medical School, Hanover, NH 03755; 2Norris Cotton Cancer Center, Dartmouth-Hitchcock Medical Center, Lebanon, NH 03756; 3Division of Cell and Molecular Biology, Department of Biology, Boston University, Boston, MA 02215, USA Received February 1, 2011; Accepted March 17, 2011 DOI: 10.3892/or.2011.1268 Abstract. Malignant gliomas are aggressive and angiogenic Introduction tumors with high VEGF content. Consequently, approaches such as metronomic chemotherapy, which have an anti- Gliomas are highly angiogenic tumors with rapid infiltrative angiogenic effect, are being investigated. However, a lack of growth and profound microvascular proliferation (1). Despite an appropriate technique that can facilitate the identification improvements in surgery and radiotherapy; the prognosis of vascular changes during antiangiogenic treatments has of glioma patients has remained poor (2,3). Consequently, restricted therapeutic optimization. We have investigated the new methods are urgently needed to improve and synergize potential of tumor pO2 as a marker to detect vascular changes strategies for the treatment of gliomas. The presence of tumor during metronomic chemotherapy. Electron paramagnetic hypoxia (pO2 <10-15 mmHg) further compromises the outcome resonance (EPR) oximetry was used to repeatedly assess tumor by stimulating glioma progression, aggressive phenotypes, pO2 during metronomic cyclophosphamide treatment of subcu- metastases and resistance to therapies (4-6). Tumor hypoxia taneous 9L tumors. The 9L tumors were hypoxic with a pO2 of cannot be predicted by tumor type or size and therefore must 5.6-8 mmHg and a tumor volume of 247-300 mm3 prior to any be measured. -
Intra-Operative Assessment of Breast Tumor Margins Using Diffuse Reflectance Spectroscopy By
Intra-operative Assessment of Breast Tumor Margins Using Diffuse Reflectance Spectroscopy by Torre Michelle Bydlon Department of Biomedical Engineering Duke University Date:_______________________ Approved: ___________________________ Nirmala Ramanujam, Supervisor ___________________________ William T. Barry ___________________________ Joseph Geradts ___________________________ Kathryn Nightingale ___________________________ Lee G. Wilke ___________________________ Tuan Vo-Dinh Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biomedical Engineering in the Graduate School of Duke University 2012 ABSTRACT Intra-operative Assessment of Breast Tumor Margins Using Diffuse Reflectance Spectroscopy by Torre Michelle Bydlon Department of Biomedical Engineering Duke University Date:_______________________ Approved: ___________________________ Nirmala Ramanujam, Supervisor ___________________________ William T. Barry ___________________________ Joseph Geradts ___________________________ Kathryn Nightingale ___________________________ Lee G. Wilke ___________________________ Tuan Vo-Dinh An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biomedical Engineering in the Graduate School of Duke University 2012 Copyright by Torre Michelle Bydlon 2012 Abstract Breast cancer is one of the leading causes of death every year in the United States for women. Breast conserving surgery (BCS) is one treatment option for these patients where achieving tumor-free surgical margins is desired to avoid local recurrence [1, 2]. Unfortunately, as many as 17.7-72% of patients undergoing BCS require repeat surgeries due to a close or positive surgical margin diagnosed post-operatively [3-11]. Histopathology is the current gold standard for determining surgical margin status; however, given the large volumes of resected breast tissue it is not feasible to section the entire specimen. -
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Harmonized Tariff Schedule of the United States (2009) (Rev. 1) Annotated for Statistical Reporting Purposes PHARMACEUTICAL APPENDIX TO THE HARMONIZED TARIFF SCHEDULE Harmonized Tariff Schedule of the United States (2009) (Rev. 1) Annotated for Statistical Reporting Purposes PHARMACEUTICAL APPENDIX TO THE TARIFF SCHEDULE 2 Table 1. This table enumerates products described by International Non-proprietary Names (INN) which shall be entered free of duty under general note 13 to the tariff schedule. The Chemical Abstracts Service (CAS) registry numbers also set forth in this table are included to assist in the identification of the products concerned. For purposes of the tariff schedule, any references to a product enumerated in this table includes such product by whatever name known. ABACAVIR 136470-78-5 ACEXAMIC ACID 57-08-9 ABAFUNGIN 129639-79-8 ACICLOVIR 59277-89-3 ABAMECTIN 65195-55-3 ACIFRAN 72420-38-3 ABANOQUIL 90402-40-7 ACIPIMOX 51037-30-0 ABAPERIDONE 183849-43-6 ACITAZANOLAST 114607-46-4 ABARELIX 183552-38-7 ACITEMATE 101197-99-3 ABATACEPT 332348-12-6 ACITRETIN 55079-83-9 ABCIXIMAB 143653-53-6 ACIVICIN 42228-92-2 ABECARNIL 111841-85-1 ACLANTATE 39633-62-0 ABETIMUS 167362-48-3 ACLARUBICIN 57576-44-0 ABIRATERONE 154229-19-3 ACLATONIUM NAPADISILATE 55077-30-0 ABITESARTAN 137882-98-5 ACODAZOLE 79152-85-5 ABLUKAST 96566-25-5 ACOLBIFENE 182167-02-8 ABRINEURIN 178535-93-8 ACONIAZIDE 13410-86-1 ABUNIDAZOLE 91017-58-2 ACOTIAMIDE 185106-16-5 ACADESINE 2627-69-2 ACOXATRINE 748-44-7 ACAMPROSATE 77337-76-9 ACREOZAST 123548-56-1 ACAPRAZINE 55485-20-6