Of a New Concept of Neocortex Evolution*
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Non-Canonical Feedforward Pathway for Computing Odor Identity
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.28.317248; this version posted September 30, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. A non-canonical feedforward pathway for computing odor identity Honggoo Chae1♯, Arkarup Banerjee1,2,3♯ & Dinu F. Albeanu1,2* 1 Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 2 Cold Spring Harbor Laboratory School for Biological Sciences, Cold Spring Harbor, NY 3 current address - New York University Medical Center, New York, NY ♯ equal contribution * Correspondence: [email protected] Short title: Cell-type specific decoding of odor identity and intensity in the olfactory bulb Key words: mitral and tufted cells, piriform cortex, anterior olfactory nucleus, cortical feedback, concentration invariant odor identity decoding, two photon calcium imaging, PCA, dPCA, linear and non-linear decoders bioRxiv preprint doi: https://doi.org/10.1101/2020.09.28.317248; this version posted September 30, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Sensory systems rely on statistical regularities in the experienced inputs to either group disparate stimuli, or parse them into separate categories1,2. While considerable progress has been made in understanding invariant object recognition in the visual system3–5, how this is implemented by olfactory neural circuits remains an open question6–10. The current leading model states that odor identity is primarily computed in the piriform cortex, drawing from mitral cell (MC) input6–9,11. -
Toward a Common Terminology for the Gyri and Sulci of the Human Cerebral Cortex Hans Ten Donkelaar, Nathalie Tzourio-Mazoyer, Jürgen Mai
Toward a Common Terminology for the Gyri and Sulci of the Human Cerebral Cortex Hans ten Donkelaar, Nathalie Tzourio-Mazoyer, Jürgen Mai To cite this version: Hans ten Donkelaar, Nathalie Tzourio-Mazoyer, Jürgen Mai. Toward a Common Terminology for the Gyri and Sulci of the Human Cerebral Cortex. Frontiers in Neuroanatomy, Frontiers, 2018, 12, pp.93. 10.3389/fnana.2018.00093. hal-01929541 HAL Id: hal-01929541 https://hal.archives-ouvertes.fr/hal-01929541 Submitted on 21 Nov 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. REVIEW published: 19 November 2018 doi: 10.3389/fnana.2018.00093 Toward a Common Terminology for the Gyri and Sulci of the Human Cerebral Cortex Hans J. ten Donkelaar 1*†, Nathalie Tzourio-Mazoyer 2† and Jürgen K. Mai 3† 1 Department of Neurology, Donders Center for Medical Neuroscience, Radboud University Medical Center, Nijmegen, Netherlands, 2 IMN Institut des Maladies Neurodégénératives UMR 5293, Université de Bordeaux, Bordeaux, France, 3 Institute for Anatomy, Heinrich Heine University, Düsseldorf, Germany The gyri and sulci of the human brain were defined by pioneers such as Louis-Pierre Gratiolet and Alexander Ecker, and extensified by, among others, Dejerine (1895) and von Economo and Koskinas (1925). -
A Hypothesis for the Evolution of the Upper Layers of the Neocortex Through Co-Option of the Olfactory Cortex Developmental Program
HYPOTHESIS AND THEORY published: 12 May 2015 doi: 10.3389/fnins.2015.00162 A hypothesis for the evolution of the upper layers of the neocortex through co-option of the olfactory cortex developmental program Federico Luzzati 1, 2* 1 Department of Life Sciences and Systems Biology (DBIOS), University of Turin, Turin, Italy, 2 Neuroscience Institute Cavalieri Ottolenghi, Orbassano, Truin, Italy The neocortex is unique to mammals and its evolutionary origin is still highly debated. The neocortex is generated by the dorsal pallium ventricular zone, a germinative domain that in reptiles give rise to the dorsal cortex. Whether this latter allocortical structure Edited by: contains homologs of all neocortical cell types it is unclear. Recently we described a Francisco Aboitiz, + + Pontificia Universidad Catolica de population of DCX /Tbr1 cells that is specifically associated with the layer II of higher Chile, Chile order areas of both the neocortex and of the more evolutionary conserved piriform Reviewed by: cortex. In a reptile similar cells are present in the layer II of the olfactory cortex and Loreta Medina, the DVR but not in the dorsal cortex. These data are consistent with the proposal that Universidad de Lleida, Spain Gordon M. Shepherd, the reptilian dorsal cortex is homologous only to the deep layers of the neocortex while Yale University School of Medicine, the upper layers are a mammalian innovation. Based on our observations we extended USA Fernando Garcia-Moreno, these ideas by hypothesizing that this innovation was obtained by co-opting a lateral University of Oxford, UK and/or ventral pallium developmental program. Interestingly, an analysis in the Allen brain *Correspondence: atlas revealed a striking similarity in gene expression between neocortical layers II/III Federico Luzzati, and piriform cortex. -
Neocortex and Allocortex Respond Differentially to Cellular Stress in Vitro and Aging in Vivo
Neocortex and Allocortex Respond Differentially to Cellular Stress In Vitro and Aging In Vivo Jessica M. Posimo, Amanda M. Titler, Hailey J. H. Choi, Ajay S. Unnithan, Rehana K. Leak* Division of Pharmaceutical Sciences, Mylan School of Pharmacy, Duquesne University, Pittsburgh, Pennsylvania, United States of America Abstract In Parkinson’s and Alzheimer’s diseases, the allocortex accumulates aggregated proteins such as synuclein and tau well before neocortex. We present a new high-throughput model of this topographic difference by microdissecting neocortex and allocortex from the postnatal rat and treating them in parallel fashion with toxins. Allocortical cultures were more vulnerable to low concentrations of the proteasome inhibitors MG132 and PSI but not the oxidative poison H2O2. The proteasome appeared to be more impaired in allocortex because MG132 raised ubiquitin-conjugated proteins and lowered proteasome activity in allocortex more than neocortex. Allocortex cultures were more vulnerable to MG132 despite greater MG132-induced rises in heat shock protein 70, heme oxygenase 1, and catalase. Proteasome subunits PA700 and PA28 were also higher in allocortex cultures, suggesting compensatory adaptations to greater proteasome impairment. Glutathione and ceruloplasmin were not robustly MG132-responsive and were basally higher in neocortical cultures. Notably, neocortex cultures became as vulnerable to MG132 as allocortex when glutathione synthesis or autophagic defenses were inhibited. Conversely, the glutathione precursor N-acetyl cysteine rendered allocortex resilient to MG132. Glutathione and ceruloplasmin levels were then examined in vivo as a function of age because aging is a natural model of proteasome inhibition and oxidative stress. Allocortical glutathione levels rose linearly with age but were similar to neocortex in whole tissue lysates. -
The Structural Model: a Theory Linking Connections, Plasticity, Pathology, Development and Evolution of the Cerebral Cortex
Brain Structure and Function https://doi.org/10.1007/s00429-019-01841-9 REVIEW The Structural Model: a theory linking connections, plasticity, pathology, development and evolution of the cerebral cortex Miguel Ángel García‑Cabezas1 · Basilis Zikopoulos2,3 · Helen Barbas1,3 Received: 11 October 2018 / Accepted: 29 January 2019 © Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The classical theory of cortical systematic variation has been independently described in reptiles, monotremes, marsupials and placental mammals, including primates, suggesting a common bauplan in the evolution of the cortex. The Structural Model is based on the systematic variation of the cortex and is a platform for advancing testable hypotheses about cortical organization and function across species, including humans. The Structural Model captures the overall laminar structure of areas by dividing the cortical architectonic continuum into discrete categories (cortical types), which can be used to test hypotheses about cortical organization. By type, the phylogenetically ancient limbic cortices—which form a ring at the base of the cerebral hemisphere—are agranular if they lack layer IV, or dysgranular if they have an incipient granular layer IV. Beyond the dysgranular areas, eulaminate type cortices have six layers. The number and laminar elaboration of eulaminate areas differ depending on species or cortical system within a species. The construct of cortical type retains the topology of the systematic variation of the cortex and forms the basis for a predictive Structural Model, which has successfully linked cortical variation to the laminar pattern and strength of cortical connections, the continuum of plasticity and stability of areas, the regularities in the distribution of classical and novel markers, and the preferential vulnerability of limbic areas to neurodegenerative and psychiatric diseases. -
Computational Capacity of Pyramidal Neurons in the Cerebral Cortex
Computational capacity of pyramidal neurons in the cerebral cortex Danko D. Georgieva,∗, Stefan K. Kolevb, Eliahu Cohenc, James F. Glazebrookd aInstitute for Advanced Study, 30 Vasilaki Papadopulu Str., Varna 9010, Bulgaria bInstitute of Electronics, Bulgarian Academy of Sciences, 72 Tzarigradsko Chaussee Blvd., Sofia 1784, Bulgaria cFaculty of Engineering and the Institute of Nanotechnology and Advanced Materials, Bar Ilan University, Ramat Gan 5290002, Israel dDepartment of Mathematics and Computer Science, Eastern Illinois University, Charleston, IL 61920, USA Abstract The electric activities of cortical pyramidal neurons are supported by structurally stable, morphologically complex axo-dendritic trees. Anatomical differences between axons and dendrites in regard to their length or caliber reflect the underlying functional specializations, for input or output of neural information, re- spectively. For a proper assessment of the computational capacity of pyramidal neurons, we have analyzed an extensive dataset of three-dimensional digital reconstructions from the NeuroMorpho.Org database, and quantified basic dendritic or axonal morphometric measures in different regions and layers of the mouse, rat or human cerebral cortex. Physical estimates of the total number and type of ions involved in neuronal elec- tric spiking based on the obtained morphometric data, combined with energetics of neurotransmitter release and signaling fueled by glucose consumed by the active brain, support highly efficient cerebral computation performed at the thermodynamically allowed Landauer limit for implementation of irreversible logical oper- ations. Individual proton tunneling events in voltage-sensing S4 protein α-helices of Na+,K+ or Ca2+ ion channels are ideally suited to serve as single Landauer elementary logical operations that are then amplified by selective ionic currents traversing the open channel pores. -
Nomina Histologica Veterinaria, First Edition
NOMINA HISTOLOGICA VETERINARIA Submitted by the International Committee on Veterinary Histological Nomenclature (ICVHN) to the World Association of Veterinary Anatomists Published on the website of the World Association of Veterinary Anatomists www.wava-amav.org 2017 CONTENTS Introduction i Principles of term construction in N.H.V. iii Cytologia – Cytology 1 Textus epithelialis – Epithelial tissue 10 Textus connectivus – Connective tissue 13 Sanguis et Lympha – Blood and Lymph 17 Textus muscularis – Muscle tissue 19 Textus nervosus – Nerve tissue 20 Splanchnologia – Viscera 23 Systema digestorium – Digestive system 24 Systema respiratorium – Respiratory system 32 Systema urinarium – Urinary system 35 Organa genitalia masculina – Male genital system 38 Organa genitalia feminina – Female genital system 42 Systema endocrinum – Endocrine system 45 Systema cardiovasculare et lymphaticum [Angiologia] – Cardiovascular and lymphatic system 47 Systema nervosum – Nervous system 52 Receptores sensorii et Organa sensuum – Sensory receptors and Sense organs 58 Integumentum – Integument 64 INTRODUCTION The preparations leading to the publication of the present first edition of the Nomina Histologica Veterinaria has a long history spanning more than 50 years. Under the auspices of the World Association of Veterinary Anatomists (W.A.V.A.), the International Committee on Veterinary Anatomical Nomenclature (I.C.V.A.N.) appointed in Giessen, 1965, a Subcommittee on Histology and Embryology which started a working relation with the Subcommittee on Histology of the former International Anatomical Nomenclature Committee. In Mexico City, 1971, this Subcommittee presented a document entitled Nomina Histologica Veterinaria: A Working Draft as a basis for the continued work of the newly-appointed Subcommittee on Histological Nomenclature. This resulted in the editing of the Nomina Histologica Veterinaria: A Working Draft II (Toulouse, 1974), followed by preparations for publication of a Nomina Histologica Veterinaria. -
Cortical Connections Position Primate Area 25 As a Keystone for Interoception, Emotion, and Memory
The Journal of Neuroscience, February 14, 2018 • 38(7):1677–1698 • 1677 Systems/Circuits Cortical Connections Position Primate Area 25 as a Keystone for Interoception, Emotion, and Memory X Mary Kate P. Joyce1,2 and XHelen Barbas1,2 1Graduate Program in Neuroscience, Boston University and School of Medicine, Boston, Massachusetts 02215, and 2Neural Systems Laboratory, Department of Health Sciences, Boston University, Boston, Massachusetts 02215 The structural and functional integrity of subgenual cingulate area 25 (A25) is crucial for emotional expression and equilibrium. A25 has a key role in affective networks, and its disruption has been linked to mood disorders, but its cortical connections have yet to be systematically or fully studied. Using neural tracers in rhesus monkeys, we found that A25 was densely connected with other ventrome- dial and posterior orbitofrontal areas associated with emotions and homeostasis. A moderate pathway linked A25 with frontopolar area 10, an area associated with complex cognition, which may regulate emotions and dampen negative affect. Beyond the frontal lobe, A25 was connected with auditory association areas and memory-related medial temporal cortices, and with the interoceptive-related anterior insula. A25 mostly targeted the superficial cortical layers of other areas, where broadly dispersed terminations comingled with modula- tory inhibitory or disinhibitory microsystems, suggesting a dominant excitatory effect. The architecture and connections suggest that A25 is the consummate feedback system in the PFC. Conversely, in the entorhinal cortex, A25 pathways terminated in the middle-deep layers amid a strong local inhibitory microenvironment, suggesting gating of hippocampal output to other cortices and memory storage. The graded cortical architecture and associated laminar patterns of connections suggest how areas, layers, and functionally distinct classes of inhibitory neurons can be recruited dynamically to meet task demands. -
Direct Visualization of the Perforant Pathway in the Human Brain with Ex Vivo Diffusion Tensor Imaging
ORIGINAL RESEARCH ARTICLE published: 28 May 2010 HUMAN NEUROSCIENCE doi: 10.3389/fnhum.2010.00042 Direct visualization of the perforant pathway in the human brain with ex vivo diffusion tensor imaging Jean C. Augustinack1*, Karl Helmer1, Kristen E. Huber1, Sita Kakunoori1, Lilla Zöllei1,2 and Bruce Fischl1,2 1 Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA 2 Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA Edited by: Ex vivo magnetic resonance imaging yields high resolution images that reveal detailed cerebral Andreas Jeromin, Banyan Biomarkers, anatomy and explicit cytoarchitecture in the cerebral cortex, subcortical structures, and white USA matter in the human brain. Our data illustrate neuroanatomical correlates of limbic circuitry with Reviewed by: Konstantinos Arfanakis, Illinois Institute high resolution images at high field. In this report, we have studied ex vivo medial temporal of Technology, USA lobe samples in high resolution structural MRI and high resolution diffusion MRI. Structural and James Gee, University of Pennsylvania, diffusion MRIs were registered to each other and to histological sections stained for myelin for USA validation of the perforant pathway. We demonstrate probability maps and fiber tracking from Christopher Kroenke, Oregon Health and Science University, USA diffusion tensor data that allows the direct visualization of the perforant pathway. Although it *Correspondence: is not possible to validate the DTI data with invasive measures, results described here provide Jean Augustinack, Athinoula A. an additional line of evidence of the perforant pathway trajectory in the human brain and that Martinos Center for Biomedical the perforant pathway may cross the hippocampal sulcus. -
Staging of Alzheimer Disease-Associated Neurowbrillary Pathology Using Parayn Sections and Immunocytochemistry
Acta Neuropathol (2006) 112:389–404 DOI 10.1007/s00401-006-0127-z METHODS REPORT Staging of Alzheimer disease-associated neuroWbrillary pathology using paraYn sections and immunocytochemistry Heiko Braak · Irina AlafuzoV · Thomas Arzberger · Hans Kretzschmar · Kelly Del Tredici Received: 8 June 2006 / Revised: 21 July 2006 / Accepted: 21 July 2006 / Published online: 12 August 2006 © Springer-Verlag 2006 Abstract Assessment of Alzheimer’s disease (AD)- revised here by adapting tissue selection and process- related neuroWbrillary pathology requires a procedure ing to the needs of paraYn-embedded sections (5–15 m) that permits a suYcient diVerentiation between initial, and by introducing a robust immunoreaction (AT8) for intermediate, and late stages. The gradual deposition hyperphosphorylated tau protein that can be processed of a hyperphosphorylated tau protein within select on an automated basis. It is anticipated that this neuronal types in speciWc nuclei or areas is central to revised methodological protocol will enable a more the disease process. The staging of AD-related neuroW- uniform application of the staging procedure. brillary pathology originally described in 1991 was per- formed on unconventionally thick sections (100 m) Keywords Alzheimer’s disease · NeuroWbrillary using a modern silver technique and reXected the pro- changes · Immunocytochemistry · gress of the disease process based chieXy on the topo- Hyperphosphorylated tau protein · Neuropathologic graphic expansion of the lesions. To better meet the staging · Pretangles demands of routine laboratories this procedure is Introduction This study was made possible by funding from the German Research Council (Deutsche Forschungsgemeinschaft) and BrainNet Europe II (European Commission LSHM-CT-2004- The development of intraneuronal lesions at selec- 503039). -
Limbic Areas Have Been Quantitatively Stud Tex: an Outer Layer of Small Granular Type Cells, An
CHAPTER 15 Development of the Limbic Cortical Areas 15.1 Neurogenetic Gradients in the Lateral Limbic 15.2.3 The Retrosplenial Area, 195 Areas, 187 15.2.4 Gradients Between Areas, 197 15.1.1 Radial and Transverse Neurogenetic 15.3 Neurogenetic Gradients in- the Orbital Cortex, Gradients, 188 197 15.1.2 Unique Longitudinal Neurogenetic 15.4 Correlations Between Neurogenetic Gradients Gradients, 188 and Anatomical Connections in the Limbic 15.2 Neurogenetic Gradients in the Medial Limbic Cortex, 198 Areas, 191 15.4.1 Connections of the Anterior Thalamic 15.2.1 The Dorsal Peduncular and Infralimbic Nuclear Complex with the Medial Limbic Areas, 191 Cortex, 198 15.2.2 The Cingulate Areas, 193 15.4.2 Thalamocortical Connections of the Gustatory Cortex, 198 As early as 1664, Thomas Willis wrote that the cortex hypothesis and named the interconnected cortical and on the borders of the cerebral hemispheres had unique subcortical structures the limbic system. Since then, anatomical features resembling a "hem" or "limbus." anatomical and functional links in the limbic system in In his 1878 paper, Broca called that area the "grande general and the medial limbic cortex in particular have lobe limbique" (reviewed in White, 1965). In rats as been widely studied in relation to behavior (Isaacson, well as in man, the limbic lobe is a continuous cortical 1974) and support has been provided for Papez' orig band encircling the neocortex. In this chapter, we use inal hypothesis. The participation of the lateral limbic the term limbic cortex to include parts of Broca's cortex in other circuits involved with emotional be limbic lobe that have been traditionally considered havior was' emphasized by Livingston and Escobar neocortex by some (Papez, 1937; MacLean, 1952; (1971). -
Ontology and Nomenclature
TECHNICAL WHITE PAPER: ONTOLOGY AND NOMENCLATURE OVERVIEW Currently no “standard” anatomical ontology is available for the description of human brain development. The main goal behind the generation of this ontology was to guide specific brain tissue sampling for transcriptome analysis (RNA sequencing) and gene expression microarray using laser microdissection (LMD), and to provide nomenclatures for reference atlases of human brain development. This ontology also aimed to cover both developing and adult human brain structures and to be mostly comparable to the nomenclatures for non- human primates. To reach these goals some structure groupings are different from what is traditionally put forth in the literature. In addition, some acronyms and structure abbreviations also differ from commonly used terms in order to provide unique identifiers across the integrated ontologies and nomenclatures. This ontology follows general developmental stages of the brain and contains both transient (e.g., subplate zone and ganglionic eminence in the forebrain) and established brain structures. The following are some important features of this ontology. First, four main branches, i.e., gray matter, white matter, ventricles and surface structures, were generated under the three major brain regions (forebrain, midbrain and hindbrain). Second, different cortical regions were named as different “cortices” or “areas” rather than “lobes” and “gyri”, due to the difference in cortical appearance between developing (smooth) and mature (gyral) human brains. Third, an additional “transient structures” branch was generated under the “gray matter” branch of the three major brain regions to guide the sampling of some important transient brain lamina and regions. Fourth, the “surface structures” branch mainly contains important brain surface landmarks such as cortical sulci and gyri as well as roots of cranial nerves.