Marine Habitats Prior to Onset of Ocean Warming in 1976, with Lists of Fish Predators F1 James R
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UC San Diego UC San Diego Previously Published Works Title Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Permalink https://escholarship.org/uc/item/9z7703dj Journal BMC Evolutionary Biology, 13(1) ISSN 1471-2148 Authors Lin, Hsiu-Chin Hastings, Philip A Publication Date 2013-09-25 DOI http://dx.doi.org/10.1186/1471-2148-13-210 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Lin and Hastings BMC Evolutionary Biology 2013, 13:210 http://www.biomedcentral.com/1471-2148/13/210 RESEARCH ARTICLE Open Access Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Hsiu-Chin Lin1,2* and Philip A Hastings1 Abstract Background: The Blenniiformes comprises six families, 151 genera and nearly 900 species of small teleost fishes closely associated with coastal benthic habitats. They provide an unparalleled opportunity for studying marine biogeography because they include the globally distributed families Tripterygiidae (triplefin blennies) and Blenniidae (combtooth blennies), the temperate Clinidae (kelp blennies), and three largely Neotropical families (Labrisomidae, Chaenopsidae, and Dactyloscopidae). However, interpretation of these distributional patterns has been hindered by largely unresolved inter-familial relationships and the lack of evidence of monophyly of the Labrisomidae. Results: We explored the phylogenetic relationships of the Blenniiformes based on one mitochondrial (COI) and four nuclear (TMO-4C4, RAG1, Rhodopsin, and Histone H3) loci for 150 blenniiform species, and representative outgroups (Gobiesocidae, Opistognathidae and Grammatidae). According to the consensus of Bayesian Inference, Maximum Likelihood, and Maximum Parsimony analyses, the monophyly of the Blenniiformes and the Tripterygiidae, Blenniidae, Clinidae, and Dactyloscopidae is supported. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
Appendix E: Fish Species List
Appendix F. Fish Species List Common Name Scientific Name American shad Alosa sapidissima arrow goby Clevelandia ios barred surfperch Amphistichus argenteus bat ray Myliobatis californica bay goby Lepidogobius lepidus bay pipefish Syngnathus leptorhynchus bearded goby Tridentiger barbatus big skate Raja binoculata black perch Embiotoca jacksoni black rockfish Sebastes melanops bonehead sculpin Artedius notospilotus brown rockfish Sebastes auriculatus brown smoothhound Mustelus henlei cabezon Scorpaenichthys marmoratus California halibut Paralichthys californicus California lizardfish Synodus lucioceps California tonguefish Symphurus atricauda chameleon goby Tridentiger trigonocephalus cheekspot goby Ilypnus gilberti chinook salmon Oncorhynchus tshawytscha curlfin sole Pleuronichthys decurrens diamond turbot Hypsopsetta guttulata dwarf perch Micrometrus minimus English sole Pleuronectes vetulus green sturgeon* Acipenser medirostris inland silverside Menidia beryllina jacksmelt Atherinopsis californiensis leopard shark Triakis semifasciata lingcod Ophiodon elongatus longfin smelt Spirinchus thaleichthys night smelt Spirinchus starksi northern anchovy Engraulis mordax Pacific herring Clupea pallasi Pacific lamprey Lampetra tridentata Pacific pompano Peprilus simillimus Pacific sanddab Citharichthys sordidus Pacific sardine Sardinops sagax Pacific staghorn sculpin Leptocottus armatus Pacific tomcod Microgadus proximus pile perch Rhacochilus vacca F-1 plainfin midshipman Porichthys notatus rainwater killifish Lucania parva river lamprey Lampetra -
Environmental DNA Reveals the Fine-Grained and Hierarchical
www.nature.com/scientificreports OPEN Environmental DNA reveals the fne‑grained and hierarchical spatial structure of kelp forest fsh communities Thomas Lamy 1,2*, Kathleen J. Pitz 3, Francisco P. Chavez3, Christie E. Yorke1 & Robert J. Miller1 Biodiversity is changing at an accelerating rate at both local and regional scales. Beta diversity, which quantifes species turnover between these two scales, is emerging as a key driver of ecosystem function that can inform spatial conservation. Yet measuring biodiversity remains a major challenge, especially in aquatic ecosystems. Decoding environmental DNA (eDNA) left behind by organisms ofers the possibility of detecting species sans direct observation, a Rosetta Stone for biodiversity. While eDNA has proven useful to illuminate diversity in aquatic ecosystems, its utility for measuring beta diversity over spatial scales small enough to be relevant to conservation purposes is poorly known. Here we tested how eDNA performs relative to underwater visual census (UVC) to evaluate beta diversity of marine communities. We paired UVC with 12S eDNA metabarcoding and used a spatially structured hierarchical sampling design to assess key spatial metrics of fsh communities on temperate rocky reefs in southern California. eDNA provided a more‑detailed picture of the main sources of spatial variation in both taxonomic richness and community turnover, which primarily arose due to strong species fltering within and among rocky reefs. As expected, eDNA detected more taxa at the regional scale (69 vs. 38) which accumulated quickly with space and plateaued at only ~ 11 samples. Conversely, the discovery rate of new taxa was slower with no sign of saturation for UVC. -
ASSESSMENT of COASTAL WATER RESOURCES and WATERSHED CONDITIONS at CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle
National Park Service U.S. Department of the Interior Technical Report NPS/NRWRD/NRTR-2006/354 Water Resources Division Natural Resource Program Centerent of the Interior ASSESSMENT OF COASTAL WATER RESOURCES AND WATERSHED CONDITIONS AT CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle The National Park Service Water Resources Division is responsible for providing water resources management policy and guidelines, planning, technical assistance, training, and operational support to units of the National Park System. Program areas include water rights, water resources planning, marine resource management, regulatory guidance and review, hydrology, water quality, watershed management, watershed studies, and aquatic ecology. Technical Reports The National Park Service disseminates the results of biological, physical, and social research through the Natural Resources Technical Report Series. Natural resources inventories and monitoring activities, scientific literature reviews, bibliographies, and proceedings of technical workshops and conferences are also disseminated through this series. Mention of trade names or commercial products does not constitute endorsement or recommendation for use by the National Park Service. Copies of this report are available from the following: National Park Service (970) 225-3500 Water Resources Division 1201 Oak Ridge Drive, Suite 250 Fort Collins, CO 80525 National Park Service (303) 969-2130 Technical Information Center Denver Service Center P.O. Box 25287 Denver, CO 80225-0287 Cover photos: Top Left: Santa Cruz, Kristen Keteles Top Right: Brown Pelican, NPS photo Bottom Left: Red Abalone, NPS photo Bottom Left: Santa Rosa, Kristen Keteles Bottom Middle: Anacapa, Kristen Keteles Assessment of Coastal Water Resources and Watershed Conditions at Channel Islands National Park, California Dr. Diana L. -
Metagenetic Analysis of 2017 Plankton Samples from Prince William Sound, Alaska
Metagenetic Analysis of 2017 Plankton Samples from Prince William Sound, Alaska. Report to Prince William Sound Regional Citizens’ Advisory Council (PWSRCAC) From Molecular Ecology Laboratory Moss Landing Marine Laboratory Dr. Jonathan Geller Melinda Wheelock Martin Guo Any opinions expressed in this PWSRCAC-commissioned report are not necessarily those of PWSRCAC. December 1, 2018 Revised August 15, 2019 Abstract This report describes the methods and findings of the metagenetic analysis of plankton samples from the waters of Prince William Sound (PWS), Alaska. The study was done to identify zooplankton, in particular the larvae of invasive benthic species. Plankton samples, collected by the Prince William Sound Science Center (PWSSC), were analyzed by the Molecular Ecology Laboratory at the Moss Landing Marine Laboratories. The samples were taken from five stations in May of 2017 in Port Valdez and elsewhere in PWS. DNA was extracted from bulk plankton and a portion of the mitochondrial Cytochrome c oxidase subunit 1 gene, the most commonly used DNA barcode for animals, was amplified by polymerase chain reaction (PCR). Products of PCR were sequenced using Illumina reagents and MiSeq instrument. 211 operational taxonomic units (an approximation of biological species) were found and 52 were identified to species. Most species were crustaceans and molluscs, and none were non-native. We also compared PWSRCAC samples taken in 2016 to the current set of samples. Fewer species were identified in 2017 than in 2016, but sampling methods varied across years. Standardization of methods and a longer time series are necessary to investigate temporal trends. Page 1 of 17 952.431.190815.MLMetagenetic Introduction Monitoring marine habitat for species of concern, including invasive species, can be costly and time-consuming, which limits the information available to resource managers, scientists, and the public. -
Tesis De Pablo David Vega García
Programa de Estudios de Posgrado CAMBIOS HISTÓRICOS EN LAS POBLACIONES DE ABULÓN AZUL Y AMARILLO EN LA PENÍNSULA DE BAJA CALIFORNIA TESIS Que para obtener el grado de Doctor en Ciencias Uso, Manejo y Preservación de los Recursos Naturales Orientación Biología Marina P r e s e n t a PABLO DAVID VEGA GARCÍA La Paz, Baja California Sur, febrero de 2016 COMITÉ TUTORIAL Dr. Salvador Emilio Lluch Cota Director de Tesis Centro de Investigaciones Biológicas del Noroeste. La Paz, BCS. México. Dra. Fiorenza Micheli Dr. Héctor Reyes Bonilla Co-Tutor Co-Tutor Hopkins Marine Station, Stanford Universidad Autónoma de Baja University. California Sur. Pacific Grove, CA. EEUU. La Paz, BCS. México. Dr. Eduardo Francisco Balart Páez Dr. Pablo Del Monte Luna Co-Tutor Co-Tutor Centro de Investigaciones Biológicas Centro de Interdisciplinario de del Noroeste. Ciencias Marinas. La Paz, BCS. México La Paz, BCS. México. COMITÉ REVISOR DE TESIS Dr. Salvador Emilio Lluch Cota Dra. Fiorenza Micheli Dr. Eduardo Francisco Balart Páez Dr. Héctor Reyes Bonilla Dr. Pablo Del Monte Luna JURADO DE EXAMEN Dr. Salvador Emilio Lluch Cota Dra. Fiorenza Micheli Dr. Eduardo Francisco Balart Páez Dr. Héctor Reyes Bonilla Dr. Pablo Del Monte Luna SUPLENTES Dr. Fausto Valenzuela Quiñonez Dr. Raúl Octavio Martínez Rincón RESUMEN El abulón es un importante recurso pesquero en México que en las últimas décadas ha presentado una importante disminución de sus poblaciones, a pesar de las estrictas regulaciones a las que está sometida su explotación. Si bien la tendencia general de las capturas de abulón indica una disminución de las dos principales especies que la conforman (Haliotis fulgens y H corrugata), a partir de su máximo histórico en 1950, esta tendencia no ha sido uniforme ni entre especies ni entre las regiones de donde se extrae. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
The Diet and Predator-Prey Relationships of the Sea Star Pycnopodia Helianthoides (Brandt) from a Central California Kelp Forest
THE DIET AND PREDATOR-PREY RELATIONSHIPS OF THE SEA STAR PYCNOPODIA HELIANTHOIDES (BRANDT) FROM A CENTRAL CALIFORNIA KELP FOREST A Thesis Presented to The Faculty of Moss Landing Marine Laboratories San Jose State University In Partial Fulfillment of the Requirements for the Degree Master of Arts by Timothy John Herrlinger December 1983 TABLE OF CONTENTS Acknowledgments iv Abstract vi List of Tables viii List of Figures ix INTRODUCTION 1 MATERIALS AND METHODS Site Description 4 Diet 5 Prey Densities and Defensive Responses 8 Prey-Size Selection 9 Prey Handling Times 9 Prey Adhesion 9 Tethering of Calliostoma ligatum 10 Microhabitat Distribution of Prey 12 OBSERVATIONS AND RESULTS Diet 14 Prey Densities 16 Prey Defensive Responses 17 Prey-Size Selection 18 Prey Handling Times 18 Prey Adhesion 19 Tethering of Calliostoma ligatum 19 Microhabitat Distribution of Prey 20 DISCUSSION Diet 21 Prey Densities 24 Prey Defensive Responses 25 Prey-Size Selection 27 Prey Handling Times 27 Prey Adhesion 28 Tethering of Calliostoma ligatum and Prey Refugia 29 Microhabitat Distribution of Prey 32 Chemoreception vs. a Chemotactile Response 36 Foraging Strategy 38 LITERATURE CITED 41 TABLES 48 FIGURES 56 iii ACKNOWLEDGMENTS My span at Moss Landing Marine Laboratories has been a wonderful experience. So many people have contributed in one way or another to the outcome. My diving buddies perse- vered through a lot and I cherish our camaraderie: Todd Anderson, Joel Thompson, Allan Fukuyama, Val Breda, John Heine, Mike Denega, Bruce Welden, Becky Herrlinger, Al Solonsky, Ellen Faurot, Gilbert Van Dykhuizen, Ralph Larson, Guy Hoelzer, Mickey Singer, and Jerry Kashiwada. Kevin Lohman and Richard Reaves spent many hours repairing com puter programs for me. -
The Fossil Record of Shell-Breaking Predation on Marine Bivalves and Gastropods
Chapter 6 The Fossil Record of Shell-Breaking Predation on Marine Bivalves and Gastropods RICHARD R. ALEXANDER and GREGORY P. DIETL I. Introduction 141 2. Durophages of Bivalves and Gastropods 142 3. Trends in Antipredatory Morphology in Space and Time .. 145 4. Predatory and Non-Predatory Sublethal Shell Breakage 155 5. Calculation ofRepair Frequencies and Prey Effectiveness 160 6. Prey Species-, Size-, and Site-Selectivity by Durophages 164 7. Repair Frequencies by Time, Latitude, and Habitat.. 166 8. Concluding Remarks 170 References 170 1. Introduction Any treatment of durophagous (shell-breaking) predation on bivalves and gastropods through geologic time must address the molluscivore's signature preserved in the victim's skeleton. Pre-ingestive breakage or crushing is only one of four methods of molluscivory (Vermeij, 1987; Harper and Skelton, 1993), the others being whole organism ingestion, insertion and extraction, and boring. Other authors in this volume treat the last behavior, whereas whole-organism ingestion, and insertion and extraction, however common, are unlikely to leave preservable evidence. Bivalve and gastropod ecologists and paleoecologists reconstruct predator-prey relationships based primarily on two, although not equally useful, categories of pre-ingestive breakage, namely lethal and sublethal (repaired) damage. Peeling crabs may leave incriminating serrated, helical RICHARD R. ALEXANDER • Department of Geological and Marine Sciences, Rider University, Lawrenceville, New Jersey, 08648-3099. GREGORY P. DIETL. Department of Zoology, North Carolina State University, Raleigh, North Carolina, 27695-7617. Predator-Prey Interactions in the Fossil Record, edited by Patricia H. Kelley, Michal Kowalewski, and Thor A. Hansen. Kluwer Academic/Plenum Publishers, New York, 2003. 141 142 Chapter 6 fractures in whorls of high-spired gastropods (Bishop, 1975), but unfortunately most lethal fractures are far less diagnostic of the causal agent and often indistinguishable from abiotically induced, taphonomic agents ofshell degradation. -
Polychaete Worms Definitions and Keys to the Orders, Families and Genera
THE POLYCHAETE WORMS DEFINITIONS AND KEYS TO THE ORDERS, FAMILIES AND GENERA THE POLYCHAETE WORMS Definitions and Keys to the Orders, Families and Genera By Kristian Fauchald NATURAL HISTORY MUSEUM OF LOS ANGELES COUNTY In Conjunction With THE ALLAN HANCOCK FOUNDATION UNIVERSITY OF SOUTHERN CALIFORNIA Science Series 28 February 3, 1977 TABLE OF CONTENTS PREFACE vii ACKNOWLEDGMENTS ix INTRODUCTION 1 CHARACTERS USED TO DEFINE HIGHER TAXA 2 CLASSIFICATION OF POLYCHAETES 7 ORDERS OF POLYCHAETES 9 KEY TO FAMILIES 9 ORDER ORBINIIDA 14 ORDER CTENODRILIDA 19 ORDER PSAMMODRILIDA 20 ORDER COSSURIDA 21 ORDER SPIONIDA 21 ORDER CAPITELLIDA 31 ORDER OPHELIIDA 41 ORDER PHYLLODOCIDA 45 ORDER AMPHINOMIDA 100 ORDER SPINTHERIDA 103 ORDER EUNICIDA 104 ORDER STERNASPIDA 114 ORDER OWENIIDA 114 ORDER FLABELLIGERIDA 115 ORDER FAUVELIOPSIDA 117 ORDER TEREBELLIDA 118 ORDER SABELLIDA 135 FIVE "ARCHIANNELIDAN" FAMILIES 152 GLOSSARY 156 LITERATURE CITED 161 INDEX 180 Preface THE STUDY of polychaetes used to be a leisurely I apologize to my fellow polychaete workers for occupation, practised calmly and slowly, and introducing a complex superstructure in a group which the presence of these worms hardly ever pene- so far has been remarkably innocent of such frills. A trated the consciousness of any but the small group great number of very sound partial schemes have been of invertebrate zoologists and phylogenetlcists inter- suggested from time to time. These have been only ested in annulated creatures. This is hardly the case partially considered. The discussion is complex enough any longer. without the inclusion of speculations as to how each Studies of marine benthos have demonstrated that author would have completed his or her scheme, pro- these animals may be wholly dominant both in num- vided that he or she had had the evidence and inclina- bers of species and in numbers of specimens. -
Zootaxa, Mollusca, Anabathridae
Zootaxa 723: 1–6 (2004) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 723 Copyright © 2004 Magnolia Press ISSN 1175-5334 (online edition) First record of the genus Pisinna Monterosato, 1878 (Mollusca, Gastropoda, Anabathridae) from the southwest Atlantic, with description of a new species FRANKLIN NOEL SANTOS 1 & RICARDO SILVA ABSALÃO 1,2 1- Departamento de Zoologia, Instituto de Biologia, Universidade do Estado do Rio de Janeiro. Rua São Francisco Xavier 524, Maracanã, Rio de Janeiro, RJ, Brazil, CEP 20550-900. E-mail: [email protected] 2- Departamento de Zoologia, Instituto de Biologia, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro. Ilha do Fundão, Rio de Janeiro, RJ, Brazil, CEP: 21941-570. Abstract The genus Pisinna Monterosato, 1878 (Anabathridae Ponder, 1988) is reported from the Brazilian coast for the first time. Pisinna bicincta n. sp. is found off Espírito Santo State (65–67 m depth) on the Brazilian continental shelf. It is diagnosed by its pupiform shell, with subsutural depression, two spiral bands (one white and one orange), dome-shaped paucispiral protoconch sculptured with about 17 spiral rows of minute flat pits, teleoconch with about 22 oblique axial cordlets, and aper- ture with columellar tooth. Key words: Mollusca, Gastropoda, Anabathridae, Pisinna bicincta, new species, Brazil Introduction Mollusks of the family Anabathridae Ponder, 1988 are minute gastropods about three mil- limeters long. They inhabit the continental shelf and slope, mainly in warm and temperate waters, and are most abundant in the intertidal and sublittoral zones (Ponder 1983; 1998). Most of the anabathrid species were described from Australia and New Zealand, where about 60 species of the genus Pisinna are known (Ponder 1998); however, Pisinna punctu- lum (Philippi, 1836), the type species of the genus, is from the Mediterranean Sea.