Arizona Game and Fish Department Heritage Data Management System
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Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys Cobitis) and Spikedace (Meda Fulgida) in the Southwestern United States
RESEARCH ARTICLE Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys cobitis) and Spikedace (Meda fulgida) in the Southwestern United States Joseph C. Dysthe1*, Kellie J. Carim1, Yvette M. Paroz2, Kevin S. McKelvey1, Michael K. Young1, Michael K. Schwartz1 1 United States Department of Agriculture, Forest Service, National Genomics Center for Wildlife and Fish Conservation, Rocky Mountain Research Station, Missoula, MT, United States of America, 2 United States a11111 Department of Agriculture, Forest Service, Southwestern Region, Albuquerque, NM, United States of America * [email protected] Abstract OPEN ACCESS Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are legally protected Citation: Dysthe JC, Carim KJ, Paroz YM, McKelvey with the status of Endangered under the U.S. Endangered Species Act and are endemic to KS, Young MK, Schwartz MK (2016) Quantitative the Gila River basin of Arizona and New Mexico. Efficient and sensitive methods for moni- PCR Assays for Detecting Loach Minnow ’ (Rhinichthys cobitis) and Spikedace (Meda fulgida)in toring these species distributions are critical for prioritizing conservation efforts. We devel- the Southwestern United States. PLoS ONE 11(9): oped quantitative PCR assays for detecting loach minnow and spikedace DNA in e0162200. doi:10.1371/journal.pone.0162200 environmental samples. Each assay reliably detected low concentrations of target DNA Editor: Michael Hofreiter, University of York, UNITED without detection of non-target species, including other cyprinid fishes with which they co- KINGDOM occur. Received: April 27, 2016 Accepted: August 18, 2016 Published: September 1, 2016 Copyright: This is an open access article, free of all Introduction copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are cyprinid fishes that were by anyone for any lawful purpose. -
Habitat Use by Pseudochondrostoma Duriense and Squalius Carolitertii Downstream of a Small-Scale Hydropower Plant
water Article Habitat Use by Pseudochondrostoma duriense and Squalius carolitertii Downstream of a Small-Scale Hydropower Plant Isabel Boavida 1,* , Filipa Ambrósio 2, Maria João Costa 1 , Ana Quaresma 1 , Maria Manuela Portela 1, António Pinheiro 1 and Francisco Godinho 3 1 CERIS, Civil Engineering Research and Innovation for Sustainability, Instituto Superior Técnico, University of Lisbon, 1049-001 Lisbon, Portugal; [email protected] (M.J.C.); [email protected] (A.Q.); [email protected] (M.M.P.); [email protected] (A.P.) 2 Instituto Superior Técnico, University of Lisbon, 1049-001 Lisbon, Portugal; fi[email protected] 3 Hidroerg, Projectos Energéticos, Lda, 1300-365 Lisbon, Portugal; [email protected] * Correspondence: [email protected] Received: 24 July 2020; Accepted: 5 September 2020; Published: 9 September 2020 Abstract: Downstream of small-scale hydropower plants (SHPs), the intensity, frequency and persistence of hydropeaking events often cause an intolerable stress on fish of all life stages. Rapid increases in flow velocity result in fish avoiding unstable habitats and seeking refuge to reduce energy expenditure. To understand fish movements and the habitat use of native Iberian cyprinids in a high-gradient peaking river, 77 individuals were PIT tagged downstream of Bragado SHP in the North of Portugal. Tagged fish species included Pseudochondrostoma duriense and Squalius carolitertii. Fish positions were recorded manually on two different occasions: during hydropeaking events (HP) and without hydropeaking events (NHP). From the 77 tagged fish, we were able to record habitat use for 33 individuals (20 P. duriense and 13 S. -
USGS Open-File Report 2009-1269, Appendix 1
Appendix 1. Summary of location, basin, and hydrological-regime characteristics for U.S. Geological Survey streamflow-gaging stations in Arizona and parts of adjacent states that were used to calibrate hydrological-regime models [Hydrologic provinces: 1, Plateau Uplands; 2, Central Highlands; 3, Basin and Range Lowlands; e, value not present in database and was estimated for the purpose of model development] Average percent of Latitude, Longitude, Site Complete Number of Percent of year with Hydrologic decimal decimal Hydrologic altitude, Drainage area, years of perennial years no flow, Identifier Name unit code degrees degrees province feet square miles record years perennial 1950-2005 09379050 LUKACHUKAI CREEK NEAR 14080204 36.47750 109.35010 1 5,750 160e 5 1 20% 2% LUKACHUKAI, AZ 09379180 LAGUNA CREEK AT DENNEHOTSO, 14080204 36.85389 109.84595 1 4,985 414.0 9 0 0% 39% AZ 09379200 CHINLE CREEK NEAR MEXICAN 14080204 36.94389 109.71067 1 4,720 3,650.0 41 0 0% 15% WATER, AZ 09382000 PARIA RIVER AT LEES FERRY, AZ 14070007 36.87221 111.59461 1 3,124 1,410.0 56 56 100% 0% 09383200 LEE VALLEY CR AB LEE VALLEY RES 15020001 33.94172 109.50204 1 9,440e 1.3 6 6 100% 0% NR GREER, AZ. 09383220 LEE VALLEY CREEK TRIBUTARY 15020001 33.93894 109.50204 1 9,440e 0.5 6 0 0% 49% NEAR GREER, ARIZ. 09383250 LEE VALLEY CR BL LEE VALLEY RES 15020001 33.94172 109.49787 1 9,400e 1.9 6 6 100% 0% NR GREER, AZ. 09383400 LITTLE COLORADO RIVER AT GREER, 15020001 34.01671 109.45731 1 8,283 29.1 22 22 100% 0% ARIZ. -
Roundtail Chub Repatriated to the Blue River
Volume 1 | Issue 2 | Summer 2015 Roundtail Chub Repatriated to the Blue River Inside this issue: With a fish exclusion barrier in place and a marked decline of catfish, the time was #TRENDINGNOW ................. 2 right for stocking Roundtail Chub into a remote eastern Arizona stream. New Initiative Launched for Southwest Native Trout.......... 2 On April 30, 2015, the Reclamation, and Marsh and Blue River. A total of 222 AZ 6-Species Conservation Department stocked 876 Associates LLC embarked on a Roundtail Chub were Agreement Renewal .............. 2 juvenile Roundtail Chub from mission to find, collect and stocked into the Blue River. IN THE FIELD ........................ 3 ARCC into the Blue River near bring into captivity some During annual monitoring, Recent and Upcoming AZGFD- the Juan Miller Crossing. Roundtail Chub for captive led Activities ........................... 3 five months later, Additional augmentation propagation from the nearest- Department staff captured Spikedace Stocked into Spring stockings to enhance the genetic neighbor population in Eagle Creek ..................................... 3 42 of the stocked chub, representation of the Blue River Creek. The Aquatic Research some of which had travelled BACK AT THE PONDS .......... 4 Roundtail Chub will be and Conservation Center as far as seven miles Native Fish Identification performed later this year. (ARCC) held and raised the upstream from the stocking Workshop at ARCC................ 4 offspring of those chub for Stockings will continue for the location. future stocking into the Blue next several years until that River. population is established in the Department biologists conducted annual Blue River and genetically In 2012, the partners delivered monitoring in subsequent mimics the wild source captive-raised juvenile years, capturing three chub population. -
Environmental Flows and Water Demands in Arizona
Environmental Flows and Water A University of Arizona Water Resources Research Center Project Demands in Arizona ater is an increasingly scarce resource and is essential for Arizona’s future. Figure 1. Elements of Environmental Flow WWith Arizona’s population growth and Occurring in Seasonal Hydrographs continued drought, citizens and water managers have been taking a closer look at water supplies in the state. Municipal, industrial, and agricul- tural water users are well-represented demand sectors, but water supplies and management to benefit the environment are not often consid- ered. This bulletin explains environmental water demands in Arizona and introduces information essential for considering environmental water demands in water management discussions. Considering water for the environment is impor- tant because humans have an interconnected and interdependent relationship with the envi- ronment. Nature provides us recreation oppor- tunities, economic benefits, and water supplies Data Source: to sustain our communities. USGS stream gage data Figure 2: Human Demand and Current Flow in Arizona Environmental water demands (or environmental flow) (circle size indicates relative amount of water) refers to how much water is needed in a watercourse to sustain a healthy ecosystem. Defining environmental water demand goes beyond the ecology and hydrol- Maximum ogy of a system and should include consideration for Flows how much water is required to achieve an agreed Industrial 40.8 maf Industrial SW Municipal upon level of river health, as determined by the GW 1% GW 8% water-using community. Arizona’s native ani- 4% mals and plants depend upon dynamic flows commonly described according to the natural Municipal SW flow regime. -
United States Department of the Interior U.S. Fish and Wildlife
United States Department of the Interior U.S. Fish and Wildlife Service 2321 West Royal Palm Road, Suite 103 Phoenix, Arizona 85021 Telephone: (602) 242-0210 FAX: (602) 242-2513 AESO/SE 02-21-00-F-0029 October 23, 2003 Memorandum To: Field Manager, Tucson Field Office, Bureau of Land Management, Tucson, Arizona From: Field Supervisor Subject: Biological Opinion: Livestock Grazing on 18 Allotments Along the Middle Gila River Ecosystem This biological opinion responds to your request for consultation with the U.S. Fish and Wildlife Service (FWS) pursuant to section 7 of the Endangered Species Act of 1973 (16 U.S. C. 1531- 1544), as amended (ESA). Your original request was dated November 24, 2000, and received in our office November 27, 2000. Due to changes made in the proposed action, your office resubmitted the biological evaluation on March 12, 2001. Thus, formal consultation commenced on that date. At issue are impacts that may result from the Tucson Field Office’s grazing program in portions of the Middle Gila River Ecosystem, Gila and Pinal counties, Arizona. These impacts may affect the following listed species: southwestern willow flycatcher (Empidonax traillii extimus); cactus ferruginous pygmy-owl (Glaucidium brasilianum cactorum); lesser long-nosed bat (Leptonycteris curasoae yerbabuenae); spikedace (Meda fulgida); and loach minnow (Tiaroga cobitis), and critical habitat designated for the spikedace and loach minnow. The Bureau of Land Management (BLM) requested our concurrence that the proposed action may affect, but is not likely to adversely affect, the Arizona hedgehog cactus (Echinocereus triglochidiatus var. arizonicus) and the bald eagle (Haliaeetus leucocephalus). We concur with the BLM’s determinations for these species. -
Cienegas Vanishing Climax Communities of the American
Hendrickson and Minckley Cienegas of the American Southwest 131 Abstract Cienegas The term cienega is here applied to mid-elevation (1,000-2,000 m) wetlands characterized by permanently saturated, highly organic, reducing soils. A depauperate Vanishing Climax flora dominated by low sedges highly adapted to such soils characterizes these habitats. Progression to cienega is Communities of the dependent on a complex association of factors most likely found in headwater areas. Once achieved, the community American Southwest appears stable and persistent since paleoecological data indicate long periods of cienega conditions, with infre- quent cycles of incision. We hypothesize the cienega to be an aquatic climax community. Cienegas and other marsh- land habitats have decreased greatly in Arizona in the Dean A. Hendrickson past century. Cultural impacts have been diverse and not Department of Zoology, well documented. While factors such as grazing and Arizona State University streambed modifications contributed to their destruction, the role of climate must also be considered. Cienega con- and ditions could be restored at historic sites by provision of ' constant water supply and amelioration of catastrophic W. L. Minckley flooding events. U.S. Fish and Wildlife Service Dexter Fish Hatchery Introduction and Department of Zoology Written accounts and photographs of early explorers Arizona State University and settlers (e.g., Hastings and Turner, 1965) indicate that most pre-1890 aquatic habitats in southeastern Arizona were different from what they are today. Sandy, barren streambeds (Interior Strands of Minckley and Brown, 1982) now lie entrenched between vertical walls many meters below dry valley surfaces. These same streams prior to 1880 coursed unincised across alluvial fills in shallow, braided channels, often through lush marshes. -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
Labidesthes Sicculus
Version 2, 2015 United States Fish and Wildlife Service Lower Great Lakes Fish and Wildlife Conservation Office 1 Atherinidae Atherinidae Sand Smelt Distinguishing Features: — (Atherina boyeri) — Sand Smelt (Non-native) Old World Silversides Old World Silversides Old World (Atherina boyeri) Two widely separated dorsal fins Eye wider than Silver color snout length 39-49 lateral line scales 2 anal spines, 13-15.5 rays Rainbow Smelt (Non -Native) (Osmerus mordax) No dorsal spines Pale green dorsally Single dorsal with adipose fin Coloring: Silver Elongated, pointed snout No anal spines Size: Length: up to 145mm SL Pink/purple/blue iridescence on sides Distinguishing Features: Dorsal spines (total): 7-10 Brook Silverside (Native) 1 spine, 10-11 rays Dorsal soft rays (total): 8-16 (Labidesthes sicculus) 4 spines Anal spines: 2 Anal soft rays: 13-15.5 Eye diameter wider than snout length Habitat: Pelagic in lakes, slow or still waters Similar Species: Rainbow Smelt (Osmerus mordax), 75-80 lateral line scales Brook Silverside (Labidesthes sicculus) Elongated anal fin Images are not to scale 2 3 Centrarchidae Centrarchidae Redear Sunfish Distinguishing Features: (Lepomis microlophus) Redear Sunfish (Non-native) — — Sunfishes (Lepomis microlophus) Sunfishes Red on opercular flap No iridescent lines on cheek Long, pointed pectoral fins Bluegill (Native) Dark blotch at base (Lepomis macrochirus) of dorsal fin No red on opercular flap Coloring: Brownish-green to gray Blue-purple iridescence on cheek Bright red outer margin on opercular flap -
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES Tables STEPHEN T. ROSS University of California Press Berkeley Los Angeles London © 2013 by The Regents of the University of California ISBN 978-0-520-24945-5 uucp-ross-book-color.indbcp-ross-book-color.indb 1 44/5/13/5/13 88:34:34 AAMM uucp-ross-book-color.indbcp-ross-book-color.indb 2 44/5/13/5/13 88:34:34 AAMM TABLE 1.1 Families Composing 95% of North American Freshwater Fish Species Ranked by the Number of Native Species Number Cumulative Family of species percent Cyprinidae 297 28 Percidae 186 45 Catostomidae 71 51 Poeciliidae 69 58 Ictaluridae 46 62 Goodeidae 45 66 Atherinopsidae 39 70 Salmonidae 38 74 Cyprinodontidae 35 77 Fundulidae 34 80 Centrarchidae 31 83 Cottidae 30 86 Petromyzontidae 21 88 Cichlidae 16 89 Clupeidae 10 90 Eleotridae 10 91 Acipenseridae 8 92 Osmeridae 6 92 Elassomatidae 6 93 Gobiidae 6 93 Amblyopsidae 6 94 Pimelodidae 6 94 Gasterosteidae 5 95 source: Compiled primarily from Mayden (1992), Nelson et al. (2004), and Miller and Norris (2005). uucp-ross-book-color.indbcp-ross-book-color.indb 3 44/5/13/5/13 88:34:34 AAMM TABLE 3.1 Biogeographic Relationships of Species from a Sample of Fishes from the Ouachita River, Arkansas, at the Confl uence with the Little Missouri River (Ross, pers. observ.) Origin/ Pre- Pleistocene Taxa distribution Source Highland Stoneroller, Campostoma spadiceum 2 Mayden 1987a; Blum et al. 2008; Cashner et al. 2010 Blacktail Shiner, Cyprinella venusta 3 Mayden 1987a Steelcolor Shiner, Cyprinella whipplei 1 Mayden 1987a Redfi n Shiner, Lythrurus umbratilis 4 Mayden 1987a Bigeye Shiner, Notropis boops 1 Wiley and Mayden 1985; Mayden 1987a Bullhead Minnow, Pimephales vigilax 4 Mayden 1987a Mountain Madtom, Noturus eleutherus 2a Mayden 1985, 1987a Creole Darter, Etheostoma collettei 2a Mayden 1985 Orangebelly Darter, Etheostoma radiosum 2a Page 1983; Mayden 1985, 1987a Speckled Darter, Etheostoma stigmaeum 3 Page 1983; Simon 1997 Redspot Darter, Etheostoma artesiae 3 Mayden 1985; Piller et al. -
The Indigenous and Invasive Fishes in Two Main Reservoirs in the Southwestern Anatolia (Aydin) UNED Research Journal / Cuadernos De Investigación UNED, Vol
UNED Research Journal / Cuadernos de Investigación UNED ISSN: 1659-4266 [email protected] Universidad Estatal a Distancia Costa Rica Sasi, Hüseyin; Berber, Selcuk The indigenous and invasive fishes in two main reservoirs in the southwestern Anatolia (Aydin) UNED Research Journal / Cuadernos de Investigación UNED, vol. 5, núm. 1, julio- diciembre, 2013, pp. 97-101 Universidad Estatal a Distancia San José, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=515651979014 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative The indigenous and invasive fishes in two main reservoirs in the southwestern Anatolia (Aydin) Hüseyin Sasi1 and Selcuk Berber2 1. Department of Freshwater Biology, Fisheries Faculty, Mugla Sitki Kocman University, Kotekli, Mugla, Turkey, +90.2522111894; Fax: +90.252 2111887; [email protected] 2. Department of Freshwater Biology, Fisheries Faculty, Canakkale Onsekizmart University, Canakkale, Turkey Received 27-VII-2012 Corrected 9-XI-2012 Accepted 12-XII-2012 ABSTRACT RESUMEN Buyuk Menderes River basin, located in the Southern part of Turkey, has La cuenca del Río Buyuk Menderes, situado en la parte sur de Turquía, two significant dam lakes. Threats include pollution (industrial and ag- cuenta con dos embalses importantes. En la cuenca, hay muchas ricultural activities), overfishing, habitat degradation and drought. This amenazas causadas por la contaminación (actividades industriales y study was carried out to determine the native and non-native fish fauna agrícolas), la presión pesquera, la degradación del hábitat, captación in Kemer and Topcam dams lakes in the Buyuk Menderes River.