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2020 Taxonomic Update for Phylum Negarnaviricota (Riboviria: Orthornavirae), Including the Large Orders Bunyavirales and Mononegavirales
Archives of Virology https://doi.org/10.1007/s00705-020-04731-2 VIROLOGY DIVISION NEWS 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Jens H. Kuhn1 · Scott Adkins2 · Daniela Alioto3 · Sergey V. Alkhovsky4 · Gaya K. Amarasinghe5 · Simon J. Anthony6,7 · Tatjana Avšič‑Županc8 · María A. Ayllón9,10 · Justin Bahl11 · Anne Balkema‑Buschmann12 · Matthew J. Ballinger13 · Tomáš Bartonička14 · Christopher Basler15 · Sina Bavari16 · Martin Beer17 · Dennis A. Bente18 · Éric Bergeron19 · Brian H. Bird20 · Carol Blair21 · Kim R. Blasdell22 · Steven B. Bradfute23 · Rachel Breyta24 · Thomas Briese25 · Paul A. Brown26 · Ursula J. Buchholz27 · Michael J. Buchmeier28 · Alexander Bukreyev18,29 · Felicity Burt30 · Nihal Buzkan31 · Charles H. Calisher32 · Mengji Cao33,34 · Inmaculada Casas35 · John Chamberlain36 · Kartik Chandran37 · Rémi N. Charrel38 · Biao Chen39 · Michela Chiumenti40 · Il‑Ryong Choi41 · J. Christopher S. Clegg42 · Ian Crozier43 · John V. da Graça44 · Elena Dal Bó45 · Alberto M. R. Dávila46 · Juan Carlos de la Torre47 · Xavier de Lamballerie38 · Rik L. de Swart48 · Patrick L. Di Bello49 · Nicholas Di Paola50 · Francesco Di Serio40 · Ralf G. Dietzgen51 · Michele Digiaro52 · Valerian V. Dolja53 · Olga Dolnik54 · Michael A. Drebot55 · Jan Felix Drexler56 · Ralf Dürrwald57 · Lucie Dufkova58 · William G. Dundon59 · W. Paul Duprex60 · John M. Dye50 · Andrew J. Easton61 · Hideki Ebihara62 · Toufc Elbeaino63 · Koray Ergünay64 · Jorlan Fernandes195 · Anthony R. Fooks65 · Pierre B. H. Formenty66 · Leonie F. Forth17 · Ron A. M. Fouchier48 · Juliana Freitas‑Astúa67 · Selma Gago‑Zachert68,69 · George Fú Gāo70 · María Laura García71 · Adolfo García‑Sastre72 · Aura R. Garrison50 · Aiah Gbakima73 · Tracey Goldstein74 · Jean‑Paul J. Gonzalez75,76 · Anthony Grifths77 · Martin H. Groschup12 · Stephan Günther78 · Alexandro Guterres195 · Roy A. -
Immunome Announces Creation of COVID-19
Immunome Announces Creation of COVID-19 Advisory Board Advisory Board to help guide development and clinical testing of biosynthetic convalescent plasma as a potential COVID-19 treatment and prevention of disease September 16, 2020 07:00 AM Eastern Daylight Time EXTON, Pa.--(BUSINESS WIRE)--Immunome, a biotechnology company harnessing the human B cell response to develop potentially first-in-class investigational therapeutics for oncology and infectious diseases, announced today the appointments of Michael Diamond, MD, PhD, Jeffrey Henderson, MD, PhD, Shmuel Shoham, MD, and Susan Weiss, PhD, to its newly created COVID-19 Advisory Board. Immunome was recently awarded up to $13.3M from the U.S. Department of Defense (DoD) to use its proprietary technology to develop a novel biosynthetic convalescent plasma (BCP), derived from COVID-19 super responders, as a new potential approach to combat the pandemic. Through this effort, Immunome intends to identify a combination of antibodies that are broadly active against the virus and enable multiple viral clearance mechanisms and to synthetically manufacture for non- clinical and clinical development. “This new advisory board will provide fundamental guidance on our efforts to develop a biosynthetic convalescent plasma product candidate to treat COVID-19 patients,” said Purnanand Sarma, PhD, president and CEO of Immunome. “I am pleased to welcome these talented researchers and look forward to working together to leverage our proprietary technology to identify and develop antibodies that are potently active against this deadly virus.” Dr. Michael Diamond is the Herbert S. Gasser Professor of Medicine and a Professor of Molecular Microbiology and of Pathology and Immunology at the Washington University School of Medicine. -
1 SARS Coronavirus Vaccines Protect Against Different
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.01.446491; this version posted June 1, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. SARS coronavirus vaccines protect against different coronaviruses Tanushree Dangi#1, Nicole Palacio#1, Sarah Sanchez1, Jacob Class2, Lavanya Visvabharathy3, Thomas Ciucci4,5, Igor Koralnik3, Justin Richner*2, Pablo Penaloza-MacMaster*1 1Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. 2Department of Microbiology & Immunology, University of Illinois in Chicago, Chicago, IL 60612, USA. 3Division of Neuro-Infectious Diseases & Global Neurology. 4David H. Smith Center for Vaccine Biology and Immunology, University of Rochester, Rochester, NY 14642, USA. 5Department of Microbiology and Immunology, Center for Vaccine Biology and Immunology, University of Rochester, Rochester, NY 14642, USA. #These authors contributed equally *Correspondence: Justin Richner ([email protected]) & Pablo Penaloza-MacMaster ([email protected]) 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.01.446491; this version posted June 1, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Abstract Although SARS-CoV-2 vaccines have shown efficacy against SARS-CoV-2, it is unclear if they can also protect against other coronaviruses that may infect humans in the future. -
A Look Into Bunyavirales Genomes: Functions of Non-Structural (NS) Proteins
viruses Review A Look into Bunyavirales Genomes: Functions of Non-Structural (NS) Proteins Shanna S. Leventhal, Drew Wilson, Heinz Feldmann and David W. Hawman * Laboratory of Virology, Rocky Mountain Laboratories, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT 59840, USA; [email protected] (S.S.L.); [email protected] (D.W.); [email protected] (H.F.) * Correspondence: [email protected]; Tel.: +1-406-802-6120 Abstract: In 2016, the Bunyavirales order was established by the International Committee on Taxon- omy of Viruses (ICTV) to incorporate the increasing number of related viruses across 13 viral families. While diverse, four of the families (Peribunyaviridae, Nairoviridae, Hantaviridae, and Phenuiviridae) contain known human pathogens and share a similar tri-segmented, negative-sense RNA genomic organization. In addition to the nucleoprotein and envelope glycoproteins encoded by the small and medium segments, respectively, many of the viruses in these families also encode for non-structural (NS) NSs and NSm proteins. The NSs of Phenuiviridae is the most extensively studied as a host interferon antagonist, functioning through a variety of mechanisms seen throughout the other three families. In addition, functions impacting cellular apoptosis, chromatin organization, and transcrip- tional activities, to name a few, are possessed by NSs across the families. Peribunyaviridae, Nairoviridae, and Phenuiviridae also encode an NSm, although less extensively studied than NSs, that has roles in antagonizing immune responses, promoting viral assembly and infectivity, and even maintenance of infection in host mosquito vectors. Overall, the similar and divergent roles of NS proteins of these Citation: Leventhal, S.S.; Wilson, D.; human pathogenic Bunyavirales are of particular interest in understanding disease progression, viral Feldmann, H.; Hawman, D.W. -
Table of Contents
Table of Contents Table of Contents Welcome Note of the German Research Platform for Zoonoses ........................................................ 2 Welcome Note of the Federal Government ...................................................................................... 3 Program Zoonoses 2019 - International Symposium on Zoonoses Research ...................................... 5 General information ...................................................................................................................... 14 Floor Plan .................................................................................................................................... 18 About the German Research Platform for Zoonoses ........................................................................ 19 Oral Presentations ........................................................................................................................ 20 Plenary Session I: Keynotes .......................................................................................................... 21 Session 1: Innate and Adaptive Immune Response......................................................................... 24 Session 2: Public Health ................................................................................................................ 31 Session 3: New and Re-Emerging Zoonotic Diseases ...................................................................... 38 Session 4: Diagnostics and NGS ................................................................................................... -
Development of an Infectious Clone System to Study the Life Cycle of Hazara Virus
Development of an Infectious Clone System to Study the Life Cycle of Hazara Virus Jack Fuller Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds Faculty of Biological Sciences July 2020 i The candidate confirms that the work submitted is his own and that appropriate credit has been given where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. © 2020 The University of Leeds and Jack Fuller ii Acknowledgements I would like to thank my supervisors, John, Jamel and Roger for their endless support and fresh ideas throughout my PhD. A special thanks go to John for always providing enthusiasm and encouragement, especially during the tougher times of the project! I would also like to thank everyone in 8.61, not only for making my time at Leeds enjoyable, but for helping me develop as a scientist through useful critique and discussion. A special thanks goes to Francis Hopkins, for welcoming me into the Barr group and providing a constant supply of humour and to Ellie Todd, for listening to my endless whines and gripes, and for providing welcome distractions in the form of her PowerPoint artwork. Outside of the lab, my mum deserves a special mention for always being the voice of reason and support at the end of the phone, but also for pushing me to succeed throughout my entire education. I have no doubts I would not be in the position I am now without her! Finally, a huge thanks to my partner Hannah, who has been there to support me through all the highs and lows of my PhD, and has sacrificed many weekend trips to allow me to finish experiments and to tend to my viruses! iii Abstract Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV) is a negative sense single stranded RNA virus, capable of causing fatal hemorrhagic fever in humans. -
Innate Immune Signalling Induced by Crimean-Congo Haemorrhagic Fever Virus Proteins in Vitro
INNATE IMMUNE SIGNALLING INDUCED BY CRIMEAN-CONGO HAEMORRHAGIC FEVER VIRUS PROTEINS IN VITRO Natalie Viljoen January 2019 INNATE IMMUNE SIGNALLING INDUCED BY CRIMEAN-CONGO HAEMORRHAGIC FEVER VIRUS PROTEINS IN VITRO Natalie Viljoen PhD Medical Virology Submitted in fulfilment of the requirements in respect of the PhD Medical Virology degree completed in the Division of Virology in the Faculty of Health Sciences at the University of the Free State Promoter: Professor Felicity Jane Burt Co-promoter: Professor Dominique Goedhals Division of Virology Faculty of Health Sciences University of the Free State The financial assistance of the National Research Foundation and the Poliomyelitis Research Foundation is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily attributed to these institutions. University of the Free State, Bloemfontein, South Africa January 2019 Table of content Declaration .................................................................................................................. i Acknowledgements ..................................................................................................... ii List of figures .............................................................................................................. iii List of tables ............................................................................................................... iv List of abbreviations .................................................................................................. -
Innate Immune Antagonism by Diverse Coronavirus Phosphodiesterases Stephen Goldstein University of Pennsylvania, [email protected]
University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2019 Innate Immune Antagonism By Diverse Coronavirus Phosphodiesterases Stephen Goldstein University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Allergy and Immunology Commons, Immunology and Infectious Disease Commons, Medical Immunology Commons, and the Virology Commons Recommended Citation Goldstein, Stephen, "Innate Immune Antagonism By Diverse Coronavirus Phosphodiesterases" (2019). Publicly Accessible Penn Dissertations. 3363. https://repository.upenn.edu/edissertations/3363 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/3363 For more information, please contact [email protected]. Innate Immune Antagonism By Diverse Coronavirus Phosphodiesterases Abstract Coronaviruses comprise a large family of viruses within the order Nidovirales containing single-stranded positive-sense RNA genomes of 27-32 kilobases. Divided into four genera (alpha, beta, gamma, delta) and multiple newly defined subgenera, coronaviruses include a number of important human and livestock pathogens responsible for a range of diseases. Historically, human coronaviruses OC43 and 229E have been associated with up to 30% of common colds, while the 2002 emergence of severe acute respiratory syndrome- associated coronavirus (SARS-CoV) first raised the specter of these viruses as possible pandemic agents. Although the SARS-CoV pandemic was quickly contained and the virus has not returned, the 2012 discovery of Middle East respiratory syndrome-associated coronavirus (MERS-CoV) once again elevated coronaviruses to a list of global public health threats. The eg netic diversity of these viruses has resulted in their utilization of both conserved and unique mechanisms of interaction with infected host cells. Like all viruses, coronaviruses encode multiple mechanisms for evading, suppressing, or otherwise circumventing host antiviral responses. -
The Cranberry Extract Oximacro® Prevents Hazara Virus Infection by Inhibiting the Attachment to Target Cells
The Cranberry Extract Oximacro® Prevents Hazara Virus Infection by Inhibiting the Attachment to Target Cells Author Mattia Mirandola1+, Maria Vittoria Salvati1+, Carola Rodigari1, Ali Mirazimi2,3, Massimo E. Maffei4, Giorgio Gribaudo4 and Cristiano Salata1,* Affiliation 1Department of Molecular Medicine, University of Padova, 35121 Padova, Italy. 2Department of Laboratory Medicine, Karolinska Institutet, 17177 Stockholm, Sweden. 3National Veterinary Institute, 75189 Uppsala, Sweden (A.M.) 4Department of Life Sciences and Systems Biology, University of Turin, 10123 Turin, Italy. +Equally contributions Background and Aims removed from infected cells cultures, and cell Hazara Virus (HAZV) belongs to the Nairoviridae monolayers were fixed (using acetone:methanol family and is included in the same serogroup of the (1:1) solution). Subsequently, an immunostaining Crimean-Congo haemorrhagic fever virus was performed with an in house-developed primary (CCHFV) [1]. CCHFV is the most widespread tick- anti-nucleoprotein antibody (α-NP), and after this borne arbovirus responsible for a serious incubation cells were incubated with Alexa haemorrhagic disease for which specific and FluorTM 488 goat anti-rabbit IgG (Thermo Fisher effective treatment or preventive system are Scientific, Italy). missing, thus is classified in the group risk-4 Antiviral Assays: Full treatment, Vero cells were human pathogen [2,3]. Bioactive compounds treated with different concentration of cranberry derived from several natural products may provide extract (0-0.2-0.4-0.8-0.15-3.125-6.25-12.5-25-50- a natural source of broad-spectrum antiviral agents 100 μg/mL) for 1 h before the infection, during the and, in addition, provided by a good tolerability and HAZV adhesion and after the infection until the minimal side effects. -
Taxonomy of the Order Bunyavirales: Second Update 2018
TAXONOMY OF THE ORDER BUNYAVIRALES: SECOND UPDATE 2018 Piet Maes1,$,@, Scott Adkins2,$,&,⁜, Sergey V. Alkhovsky (Альховский Сергей Владимирович)3,^,&, Tatjana Avšič-Županc4,^, Matthew J. Ballinger5,⁜, Dennis A. Bente6,^, Martin Beer7,&, Éric Bergeron8,^, Carol D. Blair9,&, Thomas Briese10,⁂ , Michael J. Buchmeier11,%, Felicity J. Burt12,^, Charles H. Calisher9,@,&, Rémi N. Charrel14,%,$,⁂ , Il Ryong Choi15,⁑, J. Christopher S. Clegg16,%, Juan Carlos de la Torre17,%,$,, Xavier de Lamballerie14,⁂ , Joseph L. DeRisi18, Michele Digiaro19,#, Mike Drebot20,^, Hideki Ebihara ( 海老原秀喜)21,⁂ , Toufic Elbeaino19,#, Koray Ergünay22,^, Charles F. Fulhorst6,@, Aura R. Garrison23,^, George Fú Gāo (高福)24,⁂ , Jean-Paul J. Gonzalez25,%, Martin H. Groschup26,⁂ , Stephan Günther27%, Anne-Lise Haenni28,⁑, Roy A. Hall29,⁜, Roger Hewson30,^, Holly R. Hughes31,^, Rakesh K. Jain32, Miranda Gilda Jonson33⁑, Sandra Junglen34,35,$,⁜, Boris Klempa34,36,@, Jonas Klingström37,@, Richard Kormelink38, Amy J. Lambert31,$,&,⁜, Stanley A. Langevin39,⁜, Igor S. Lukashevich40,%, Marco Marklewitz35,36,&, Giovanni P. Martelli41,#, Nicole Mielke-Ehret42,#, Ali Mirazimi43,^, Hans-Peter Mühlbach42,#, Rayapati Naidu44,⁜, Márcio Roberto Teixeira Nunes45,&,⁂ , Gustavo Palacios25,$,^,⁂ , Anna Papa (Άννα Παπά)46,^, Janusz T. Pawęska47,48,^, Clarence J. Peters6, Alexander Plyusnin49, Sheli R. Radoshitzky23,%, Renato O. Resende50,⁜, Víctor Romanowski51,%, Amadou Alpha Sall52,^, Maria S. Salvato53,%, Takahide Sasaya (笹谷孝英)54,$,⁑,⁂ , Connie Schmaljohn25, Xiǎohóng Shí (石晓宏) 55,&, Yukio Shirako56,⁑, -
2021 Taxonomic Update of Phylum Negarnaviricota (Riboviria: Orthornavirae), Including the Large Orders Bunyavirales and Mononegavirales
Archives of Virology https://doi.org/10.1007/s00705-021-05143-6 VIROLOGY DIVISION NEWS 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Jens H. Kuhn1 · Scott Adkins2 · Bernard R. Agwanda211,212 · Rim Al Kubrusli3 · Sergey V. Alkhovsky (Aльxoвcкий Cepгeй Bлaдимиpoвич)4 · Gaya K. Amarasinghe5 · Tatjana Avšič‑Županc6 · María A. Ayllón7,197 · Justin Bahl8 · Anne Balkema‑Buschmann9 · Matthew J. Ballinger10 · Christopher F. Basler11 · Sina Bavari12 · Martin Beer13 · Nicolas Bejerman14 · Andrew J. Bennett15 · Dennis A. Bente16 · Éric Bergeron17 · Brian H. Bird18 · Carol D. Blair19 · Kim R. Blasdell20 · Dag‑Ragnar Blystad21 · Jamie Bojko22,198 · Wayne B. Borth23 · Steven Bradfute24 · Rachel Breyta25,199 · Thomas Briese26 · Paul A. Brown27 · Judith K. Brown28 · Ursula J. Buchholz29 · Michael J. Buchmeier30 · Alexander Bukreyev31 · Felicity Burt32 · Carmen Büttner3 · Charles H. Calisher33 · Mengji Cao (曹孟籍)34 · Inmaculada Casas35 · Kartik Chandran36 · Rémi N. Charrel37 · Qi Cheng38 · Yuya Chiaki (千秋祐也)39 · Marco Chiapello40 · Il‑Ryong Choi41 · Marina Ciufo40 · J. Christopher S. Clegg42 · Ian Crozier43 · Elena Dal Bó44 · Juan Carlos de la Torre45 · Xavier de Lamballerie37 · Rik L. de Swart46 · Humberto Debat47,200 · Nolwenn M. Dheilly48 · Emiliano Di Cicco49 · Nicholas Di Paola50 · Francesco Di Serio51 · Ralf G. Dietzgen52 · Michele Digiaro53 · Olga Dolnik54 · Michael A. Drebot55 · J. Felix Drexler56 · William G. Dundon57 · W. Paul Duprex58 · Ralf Dürrwald59 · John M. Dye50 · Andrew J. Easton60 · Hideki Ebihara (海老原秀喜)61 · Toufc Elbeaino62 · Koray Ergünay63 · Hugh W. Ferguson213 · Anthony R. Fooks64 · Marco Forgia65 · Pierre B. H. Formenty66 · Jana Fránová67 · Juliana Freitas‑Astúa68 · Jingjing Fu (付晶晶)69 · Stephanie Fürl70 · Selma Gago‑Zachert71 · George Fú Gāo (高福)214 · María Laura García72 · Adolfo García‑Sastre73 · Aura R. -
A Prenylated Dsrna Sensor Protects Against Severe COVID-19 and Is Absent in Horseshoe Bats
medRxiv preprint doi: https://doi.org/10.1101/2021.05.05.21256681; this version posted May 9, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license . @WilsonlabCVR Wickenhagen et al., A Prenylated dsRNA Sensor Protects Against Severe COVID-19 and is ABsent in Horseshoe Bats A Prenylated dsRNA Sensor Protects on global health, culture and prosperity. SARS-CoV-2 is Against Severe COVID-19 and is Absent in particularly sensitive to inhibition by type I interferons (IFNs) and there is great interest in understanding how individual Horseshoe Bats IFN-stimulated genes (ISGs) inhibit SARS-CoV-2, as type I IFNs play a major role in governing COVID-19 disease Arthur Wickenhagen1, Elena Sugrue1*, Spyros Lytras1*, 1* 1 1 outcome. Specifically, inborn errors (Zhang et al., 2020) Srikeerthana Kuchi , Matthew L Turnbull , Colin Loney , and single nucleotide polymorphisms (Pairo-Castineira et 1 1 1 Vanessa Herder , Jay Allan , Innes Jarmson , Natalia al., 2020) within the IFN system are linked with more severe 1 1 1 Cameron-Ruiz , Margus Varjak , Rute M Pinto , Douglas G COVID-19. Moreover, neutralizing anti-IFN autoantibodies 1 1 1 Stewart , Simon Swingler , Marko Noerenberg , Edward J likely prevent host IFN responses from controlling SARS- 2 2 1 D Greenwood , Thomas W M Crozier , Quan Gu , Sara CoV-2 replication, again resulting in severe COVID-19 3 3 4 Clohisey , Bo Wang , Fabio Trindade Maranhão Costa , disease (Bastard et al., 2020).