Tick-Borne Viruses and Biological Processes at the Tick-Host-Virus Interface
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Chorioméningite Lymphocytaire, Tuberculose, Échinococcose…
LES ZOONOSES INFECTIEUSES Juin 2021 Ce document vous est offert par Boehringer Ingelheim Ce fascicule fait partie de l’ensemble des documents polycopiés rédigés de manière concertée par des enseignants de maladies contagieuses des quatre Ecoles nationales vétérinaires françaises, à l’usage des étudiants vétérinaires. Sa rédaction et sa mise à jour régulière ont été sous la responsabilité de B. Toma jusqu’en 2006, avec la contribution, pour les mises à jour, de : G. André-Fontaine, M. Artois, J.C. Augustin, S. Bastian, J.J. Bénet, O. Cerf, B. Dufour, M. Eloit, N. Haddad, A. Lacheretz, D.P. Picavet, M. Prave La mise à jour est réalisée depuis 2007 par N. Haddad La citation bibliographique de ce fascicule doit être faite de la manière suivante : Haddad N. et al. Les zoonoses infectieuses, Polycopié des Unités de maladies réglementées des Ecoles vétérinaires françaises, Boehringer Ingelheim (Lyon), juin 2021, 217 p. Nous remercions Boehringer Ingelheim qui, depuis de nombreuses années, finance et assure la réalisation de ce polycopié. * 1 2 OBJECTIFS D’APPRENTISSAGE Rang A (libellé souligné) et rang B A l’issue de cet enseignement, les étudiants devront être capables : • de répondre à des questions posées par une personne (propriétaire d'animaux, médecin...) relatives à la nature des principales maladies bactériennes et virales transmissibles à l'Homme lors de morsure par un carnivore . • de répondre à des questions posées par une personne (propriétaire d'animaux, médecin...) relatives à l'évolution de la maladie chez l'Homme, les modalités de la transmission et de la prévention des principales maladies bactériennes et virales transmissibles à l'Homme à partir des carnivores domestiques et les grandes lignes de leur prophylaxie. -
Tick-Transmitted Diseases
Deer tick-transmitted infections zoonotic in the eastern U.S. •Lyme disease (Borrelia burgdorferi sensu lato): erythema migrans rash, fever, chills, muscle aches; can progress to arthritis or neurologic signs – 200-500 cases/100,000/year •Babesiosis (Babesia microti): malaria like, fever, chills, muscle aches, fatigue, hemolysis/anemia– 100-200 cases/100,000/year •Human granulocytic ehrlichiosis/anaplasmosis (Anaplasma phagocytophilum): fever, chills, muscle aches, headache—50-100 cases/100,000/year •Borrelia miyamotoi disease (BMD): fever, chills, muscle aches, headache – 50-100 cases/100,000/year •Deer tick virus fever/encephalitis: fever, headache, confusion, seizures– 1-5 cases/100,000/ year Erythema migrans: not just a “bulls-eye” Courtesy of Tim Lepore MD, Nantucket Cottage Hospital Life cycle of deer ticks…critical to develop interventions 40%-70% infection rate 10%-30% infection rate Grace period: Adaptations to extended life cycle Borrelia burgdorferi: 24-48 hours (upregulation of OspC, migration from gut to salivary glands) Babesia microti: 48-62 hours (sporogony from undifferentiated salivary sporoblast) Anaplasma phagocytophilum: 24-36 hours (acquisition of “slime layer”?) Tickborne encephalitis virus: none “Restore the risk landscape to what it was before 1980” The main drivers for emergence of the Lyme disease epidemic: 1905 Pout’s Pond, Deforestation, reforestation: Nantucket dominance of successional habitat Increased development and recreational use in reforested sites Burgeoning deer herds 1986 http://www.ct.gov/caes/lib/caes/documents/publications/bulletins/b1010.pdf -
Transmission and Evolution of Tick-Borne Viruses
Available online at www.sciencedirect.com ScienceDirect Transmission and evolution of tick-borne viruses Doug E Brackney and Philip M Armstrong Ticks transmit a diverse array of viruses such as tick-borne Bourbon viruses in the U.S. [6,7]. These trends are driven encephalitis virus, Powassan virus, and Crimean-Congo by the proliferation of ticks in many regions of the world hemorrhagic fever virus that are reemerging in many parts of and by human encroachment into tick-infested habitats. the world. Most tick-borne viruses (TBVs) are RNA viruses that In addition, most TBVs are RNA viruses that mutate replicate using error-prone polymerases and produce faster than DNA-based organisms and replicate to high genetically diverse viral populations that facilitate their rapid population sizes within individual hosts to form a hetero- evolution and adaptation to novel environments. This article geneous population of closely related viral variants reviews the mechanisms of virus transmission by tick vectors, termed a mutant swarm or quasispecies [8]. This popula- the molecular evolution of TBVs circulating in nature, and the tion structure allows RNA viruses to rapidly evolve and processes shaping viral diversity within hosts to better adapt into new ecological niches, and to develop new understand how these viruses may become public health biological properties that can lead to changes in disease threats. In addition, remaining questions and future directions patterns and virulence [9]. The purpose of this paper is to for research are discussed. review the mechanisms of virus transmission among Address vector ticks and vertebrate hosts and to examine the Department of Environmental Sciences, Center for Vector Biology & diversity and molecular evolution of TBVs circulating Zoonotic Diseases, The Connecticut Agricultural Experiment Station, in nature. -
Diapositiva 1
Simultaneous outbreak of Dengue and Chikungunya in Al Hodayda, Yemen (epidemiological and phylogenetic findings) Giovanni Rezza1, Gamal El-Sawaf2, Giovanni Faggioni3, Fenicia Vescio1, Ranya Al Ameri4, Riccardo De Santis3, Ghada Helaly2, Alice Pomponi3, Alessandra Lo Presti1, Dalia Metwally2, Massimo Fantini5, FV, Hussein Qadi4, Massimo Ciccozzi1, Florigio Lista3 1Department of lnfectious, Parasitic and lmmunomediated Diseases, Istituto Superiore di Sanità, Roma, Italy; 2 Medical Research lnstitute- Alexandria University, Egypt; 3Histology and Molecular Biology Section, Army Medical an d Veterinary Research Center, Roma, ltaly; 4 University of Sana’a, Republic of Yemen; 5Department of Clinical Sciences and Translational Medicine, University of Rome "Tor Vergata", Roma, ltaly * * Background Fig.1 * * Yemen, which is located in the southwestern end of the Arabian Peninsula, is one of the * countries most affected by recurrent epidemics of dengue. * I We conducted a study on individuals hospitalized with dengue-like syndrome in Al Hodayda, with the aim of identifying viral agents responsible of febrile illness (i.e., dengue [DENV], chikungunya [CHIKV], Rift Valley [RVFV] and hemorrhagic fever virus Alkhurma). * * * Methods * The study site was represented by five hospital centers located in Al-Hodayda, United Republic * of Yemen. Patients were recruited in 2011 and 2012. Serum samples were analysed by ELISA * for the presence of IgM antibody against DENV and CHIKV by using commercial assays. Nucleic * acids were extracted by automated method and analyzed by using specific PCR for the Fig. 2 presence of sequences of DENV, RVF virus, Alkhurma virus and CHIKV. To confirm the results, 15 DENV positive sera underwent specific NS1 gene amplification and sequencing reaction. Similarly, CHIKV positive sera were thoroughly investigated by amplification and sequencing Conclusions the gene encoding the E1 protein. -
Generic Amplification and Next Generation Sequencing Reveal
Dinçer et al. Parasites & Vectors (2017) 10:335 DOI 10.1186/s13071-017-2279-1 RESEARCH Open Access Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey Ender Dinçer1†, Annika Brinkmann2†, Olcay Hekimoğlu3, Sabri Hacıoğlu4, Katalin Földes4, Zeynep Karapınar5, Pelin Fatoş Polat6, Bekir Oğuz5, Özlem Orunç Kılınç7, Peter Hagedorn2, Nurdan Özer3, Aykut Özkul4, Andreas Nitsche2 and Koray Ergünay2,8* Abstract Background: Ticks are involved with the transmission of several viruses with significant health impact. As incidences of tick-borne viral infections are rising, several novel and divergent tick- associated viruses have recently been documented to exist and circulate worldwide. This study was performed as a cross-sectional screening for all major tick-borne viruses in several regions in Turkey. Next generation sequencing (NGS) was employed for virus genome characterization. Ticks were collected at 43 locations in 14 provinces across the Aegean, Thrace, Mediterranean, Black Sea, central, southern and eastern regions of Anatolia during 2014–2016. Following morphological identification, ticks were pooled and analysed via generic nucleic acid amplification of the viruses belonging to the genera Flavivirus, Nairovirus and Phlebovirus of the families Flaviviridae and Bunyaviridae, followed by sequencing and NGS in selected specimens. Results: A total of 814 specimens, comprising 13 tick species, were collected and evaluated in 187 pools. Nairovirus and phlebovirus assays were positive in 6 (3.2%) and 48 (25.6%) pools. All nairovirus sequences were closely-related to the Crimean-Congo hemorrhagic fever virus (CCHFV) strain AP92 and formed a phylogenetically distinct cluster among related strains. -
2020 Taxonomic Update for Phylum Negarnaviricota (Riboviria: Orthornavirae), Including the Large Orders Bunyavirales and Mononegavirales
Archives of Virology https://doi.org/10.1007/s00705-020-04731-2 VIROLOGY DIVISION NEWS 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Jens H. Kuhn1 · Scott Adkins2 · Daniela Alioto3 · Sergey V. Alkhovsky4 · Gaya K. Amarasinghe5 · Simon J. Anthony6,7 · Tatjana Avšič‑Županc8 · María A. Ayllón9,10 · Justin Bahl11 · Anne Balkema‑Buschmann12 · Matthew J. Ballinger13 · Tomáš Bartonička14 · Christopher Basler15 · Sina Bavari16 · Martin Beer17 · Dennis A. Bente18 · Éric Bergeron19 · Brian H. Bird20 · Carol Blair21 · Kim R. Blasdell22 · Steven B. Bradfute23 · Rachel Breyta24 · Thomas Briese25 · Paul A. Brown26 · Ursula J. Buchholz27 · Michael J. Buchmeier28 · Alexander Bukreyev18,29 · Felicity Burt30 · Nihal Buzkan31 · Charles H. Calisher32 · Mengji Cao33,34 · Inmaculada Casas35 · John Chamberlain36 · Kartik Chandran37 · Rémi N. Charrel38 · Biao Chen39 · Michela Chiumenti40 · Il‑Ryong Choi41 · J. Christopher S. Clegg42 · Ian Crozier43 · John V. da Graça44 · Elena Dal Bó45 · Alberto M. R. Dávila46 · Juan Carlos de la Torre47 · Xavier de Lamballerie38 · Rik L. de Swart48 · Patrick L. Di Bello49 · Nicholas Di Paola50 · Francesco Di Serio40 · Ralf G. Dietzgen51 · Michele Digiaro52 · Valerian V. Dolja53 · Olga Dolnik54 · Michael A. Drebot55 · Jan Felix Drexler56 · Ralf Dürrwald57 · Lucie Dufkova58 · William G. Dundon59 · W. Paul Duprex60 · John M. Dye50 · Andrew J. Easton61 · Hideki Ebihara62 · Toufc Elbeaino63 · Koray Ergünay64 · Jorlan Fernandes195 · Anthony R. Fooks65 · Pierre B. H. Formenty66 · Leonie F. Forth17 · Ron A. M. Fouchier48 · Juliana Freitas‑Astúa67 · Selma Gago‑Zachert68,69 · George Fú Gāo70 · María Laura García71 · Adolfo García‑Sastre72 · Aura R. Garrison50 · Aiah Gbakima73 · Tracey Goldstein74 · Jean‑Paul J. Gonzalez75,76 · Anthony Grifths77 · Martin H. Groschup12 · Stephan Günther78 · Alexandro Guterres195 · Roy A. -
Potential Arbovirus Emergence and Implications for the United Kingdom Ernest Andrew Gould,* Stephen Higgs,† Alan Buckley,* and Tamara Sergeevna Gritsun*
Potential Arbovirus Emergence and Implications for the United Kingdom Ernest Andrew Gould,* Stephen Higgs,† Alan Buckley,* and Tamara Sergeevna Gritsun* Arboviruses have evolved a number of strategies to Chikungunya virus and in the family Bunyaviridae, sand- survive environmental challenges. This review examines fly fever Naples virus (often referred to as Toscana virus), the factors that may determine arbovirus emergence, pro- sandfly fever Sicilian virus, Crimean-Congo hemorrhagic vides examples of arboviruses that have emerged into new fever virus (CCHFV), Inkoo virus, and Tahyna virus, habitats, reviews the arbovirus situation in western Europe which is widespread throughout Europe. Rift Valley fever in detail, discusses potential arthropod vectors, and attempts to predict the risk for arbovirus emergence in the virus (RVFV) and Nairobi sheep disease virus (NSDV) United Kingdom. We conclude that climate change is prob- could be introduced to Europe from Africa through animal ably the most important requirement for the emergence of transportation. Finally, the family Reoviridae contains a arthropodborne diseases such as dengue fever, yellow variety of animal arbovirus pathogens, including blue- fever, Rift Valley fever, Japanese encephalitis, Crimean- tongue virus and African horse sickness virus, both known Congo hemorrhagic fever, bluetongue, and African horse to be circulating in Europe. This review considers whether sickness in the United Kingdom. While other arboviruses, any of these pathogenic arboviruses are likely to emerge such as West Nile virus, Sindbis virus, Tahyna virus, and and cause disease in the United Kingdom in the foresee- Louping ill virus, apparently circulate in the United able future. Kingdom, they do not appear to present an imminent threat to humans or animals. -
Alkhurma Hemorrhagic Fever in Humans, Najran, Saudi Arabia Abdullah G
RESEARCH Alkhurma Hemorrhagic Fever in Humans, Najran, Saudi Arabia Abdullah G. Alzahrani, Hassan M. Al Shaiban, Mohammad A. Al Mazroa, Osama Al-Hayani, Adam MacNeil, Pierre E. Rollin, and Ziad A. Memish Alkhurma virus is a fl avivirus, discovered in 1994 in a district, south of Jeddah (3). Among the 20 patients with person who died of hemorrhagic fever after slaughtering a confi rmed cases, 11 had hemorrhagic manifestations and sheep from the city of Alkhurma, Saudi Arabia. Since then, 5 died. several cases of Alkhurma hemorrhagic fever (ALKHF), Full genome sequencing has indicated that ALKV is with fatality rates up to 25%, have been documented. From a distinct variant of Kyasanur Forest disease virus, a vi- January 1, 2006, through April 1, 2009, active disease sur- rus endemic to the state of Karnataka, India (4). Recently, veillance and serologic testing of household contacts identi- fi ed ALKHF in 28 persons in Najran, Saudi Arabia. For epi- ALKV was found by reverse transcription–PCR in Orni- demiologic comparison, serologic testing of household and thodoros savignyi ticks collected from camels and camel neighborhood controls identifi ed 65 serologically negative resting places in 3 locations in western Saudi Arabia (5). persons. Among ALKHF patients, 11 were hospitalized and ALKHF is thought to be a zoonotic disease, and reservoir 17 had subclinical infection. Univariate analysis indicated hosts may include camels and sheep. Suggested routes of that the following were associated with Alkhurma virus in- transmission are contamination of a skin wound with blood fection: contact with domestic animals, feeding and slaugh- of an infected vertebrate, bite of an infected tick, or drink- tering animals, handling raw meat products, drinking unpas- ing of unpasteurized, contaminated milk (6). -
A Look Into Bunyavirales Genomes: Functions of Non-Structural (NS) Proteins
viruses Review A Look into Bunyavirales Genomes: Functions of Non-Structural (NS) Proteins Shanna S. Leventhal, Drew Wilson, Heinz Feldmann and David W. Hawman * Laboratory of Virology, Rocky Mountain Laboratories, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT 59840, USA; [email protected] (S.S.L.); [email protected] (D.W.); [email protected] (H.F.) * Correspondence: [email protected]; Tel.: +1-406-802-6120 Abstract: In 2016, the Bunyavirales order was established by the International Committee on Taxon- omy of Viruses (ICTV) to incorporate the increasing number of related viruses across 13 viral families. While diverse, four of the families (Peribunyaviridae, Nairoviridae, Hantaviridae, and Phenuiviridae) contain known human pathogens and share a similar tri-segmented, negative-sense RNA genomic organization. In addition to the nucleoprotein and envelope glycoproteins encoded by the small and medium segments, respectively, many of the viruses in these families also encode for non-structural (NS) NSs and NSm proteins. The NSs of Phenuiviridae is the most extensively studied as a host interferon antagonist, functioning through a variety of mechanisms seen throughout the other three families. In addition, functions impacting cellular apoptosis, chromatin organization, and transcrip- tional activities, to name a few, are possessed by NSs across the families. Peribunyaviridae, Nairoviridae, and Phenuiviridae also encode an NSm, although less extensively studied than NSs, that has roles in antagonizing immune responses, promoting viral assembly and infectivity, and even maintenance of infection in host mosquito vectors. Overall, the similar and divergent roles of NS proteins of these Citation: Leventhal, S.S.; Wilson, D.; human pathogenic Bunyavirales are of particular interest in understanding disease progression, viral Feldmann, H.; Hawman, D.W. -
The Molecular Characterization and the Generation of a Reverse Genetics System for Kyasanur Forest Disease Virus by Bradley
The Molecular Characterization and the Generation of a Reverse Genetics System for Kyasanur Forest Disease Virus by Bradley William Michael Cook A Thesis submitted to the Faculty of Graduate Studies of The University of Manitoba in partial fulfilment of the requirements of the degree of Master of Science Department of Microbiology University of Manitoba Winnipeg, Manitoba, Canada Copyright © 2010 by Bradley William Michael Cook 1 List of Abbreviations: AHFV - Alkhurma Hemorrhagic Fever Virus Amp – ampicillin APOIV - Apoi Virus ATP – adenosine tri-phosphate BAC – bacterial artificial chromosome BHK – Baby Hamster Kidney BSA – bovine serum albumin C1 – C-terminus fragment 1 C2 – C-terminus fragment 2 C - Capsid protein cDNA – comlementary Deoxyribonucleic acid CL – Containment Level CO2 – carbon dioxide cHP - capsid hairpin CNS - Central Nervous System CPE – cytopathic effect CS - complementary sequences DENV1-4 - Dengue Virus DIC - Disseminated Intravascular Coagulation (DIC) DNA – Deoxyribonucleic acid DTV - Deer Tick Virus 2 E - Envelope protein EDTA - ethylenediaminetetraacetic acid EM - Electron Microscopy EMCV – Encephalomyocarditis Virus ER - endoplasmic reticulum FBS – fetal bovine serum FP - fusion peptide GGEV - Greek Goat Encephalitis Virus GGYV - Gadgets Gully Virus GMP - Guanosine mono-phosphate GTP - Guanosine tri-phosphate HBV- Hepatitis B Virus HDV – Hepatitis Delta Virus HIV - Human Immunodeficiency Virus IFN – interferon IRES – internal ribosome entry sequence JEV - Japanese Encephalitis Virus KADV - Kadam Virus kDa - -
The Ecology of New Constituents of the Tick Virome and Their Relevance to Public Health
viruses Review The Ecology of New Constituents of the Tick Virome and Their Relevance to Public Health Kurt J. Vandegrift 1 and Amit Kapoor 2,3,* 1 The Center for Infectious Disease Dynamics, Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA; [email protected] 2 Center for Vaccines and Immunity, Research Institute at Nationwide Children’s Hospital, Columbus, OH 43205, USA 3 Department of Pediatrics, Ohio State University, Columbus, OH 43205, USA * Correspondence: [email protected] Received: 21 March 2019; Accepted: 29 May 2019; Published: 7 June 2019 Abstract: Ticks are vectors of several pathogens that can be transmitted to humans and their geographic ranges are expanding. The exposure of ticks to new hosts in a rapidly changing environment is likely to further increase the prevalence and diversity of tick-borne diseases. Although ticks are known to transmit bacteria and viruses, most studies of tick-borne disease have focused upon Lyme disease, which is caused by infection with Borrelia burgdorferi. Until recently, ticks were considered as the vectors of a few viruses that can infect humans and animals, such as Powassan, Tick-Borne Encephalitis and Crimean–Congo hemorrhagic fever viruses. Interestingly, however, several new studies undertaken to reveal the etiology of unknown human febrile illnesses, or to describe the virome of ticks collected in different countries, have uncovered a plethora of novel viruses in ticks. Here, we compared the virome compositions of ticks from different countries and our analysis indicates that the global tick virome is dominated by RNA viruses. Comparative phylogenetic analyses of tick viruses from these different countries reveals distinct geographical clustering of the new tick viruses. -
Table of Contents
Table of Contents Table of Contents Welcome Note of the German Research Platform for Zoonoses ........................................................ 2 Welcome Note of the Federal Government ...................................................................................... 3 Program Zoonoses 2019 - International Symposium on Zoonoses Research ...................................... 5 General information ...................................................................................................................... 14 Floor Plan .................................................................................................................................... 18 About the German Research Platform for Zoonoses ........................................................................ 19 Oral Presentations ........................................................................................................................ 20 Plenary Session I: Keynotes .......................................................................................................... 21 Session 1: Innate and Adaptive Immune Response......................................................................... 24 Session 2: Public Health ................................................................................................................ 31 Session 3: New and Re-Emerging Zoonotic Diseases ...................................................................... 38 Session 4: Diagnostics and NGS ...................................................................................................