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BIOCHIMIE an International Journal of Biochemistry and Molecular Biology
BIOCHIMIE An International Journal of Biochemistry and Molecular Biology AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0300-9084 DESCRIPTION . Published under the auspices of the Société Française de Biochimie et Biologie Moléculaire. Biochimie publishes original research articles, short communications, review articles, graphical reviews, mini-reviews, and hypotheses in the broad areas of biology, including biochemistry, enzymology, molecular and cell biology, metabolic regulation, genetics, immunology, microbiology, structural biology, genomics, proteomics, and molecular mechanisms of disease. Biochimie publishes exclusively in English. Articles are subject to peer review, and must satisfy the requirements of originality, high scientific integrity and general interest to a broad range of readers. Submissions that are judged to be of sound scientific and technical quality but do not fully satisfy the requirements for publication in Biochimie may benefit from a transfer service to a more suitable journal within the same subject area. AUDIENCE . Biochemists, Biophysicists, Molecular Biologists, Geneticists, Immunologists, Microbiologists, Cytologists. IMPACT FACTOR . 2020: 4.079 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 24 Sep 2021 www.elsevier.com/locate/biochi 1 ABSTRACTING AND INDEXING . Current Contents - Life Sciences EMBiology BIOSIS Citation Index Chemical Abstracts Pascal Francis Embase PubMed/Medline Science Citation Index Elsevier BIOBASE Scopus EDITORIAL BOARD . Chief Editor Bertrand Friguet, Sorbonne University, Paris, France Editors Xavier Coumoul, University of Paris, Paris, France Olga A. Dontsova, Lomonosov Moscow State University, Moscow, Russia Russian Federation Claude Forest, Institute of Development Research, Marseille, France Jeffrey M. -
Progress in Retinal and Eye Research
PROGRESS IN RETINAL AND EYE RESEARCH AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.3 ISSN: 1350-9462 DESCRIPTION . By invitation leading experts write on basic and clinical aspects of the eye in a style appealing to molecular biologists, neuroscientists and physiologists, as well as to vision researchers and ophthalmologists. The journal covers all aspects of eye research, including topics pertaining to the retina and pigment pithelial layer, cornea, tears, lacrimal glands, aqueous humour, iris, ciliary body, trabeculum, lens, vitreous humour and diseases such as dry-eye, inflammation, keratoconus, corneal dystrophy, glaucoma and cataract. Benefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services . Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center Any queries with proposals for review articles can be sent directly to the Editor in Chief: Neville Osborne [email protected] AUDIENCE . Ophthalmologists and neuroscientists. IMPACT FACTOR . 2020: 21.198 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 4 Oct 2021 www.elsevier.com/locate/preteyeres 1 ABSTRACTING AND INDEXING . PubMed/Medline Elsevier BIOBASE Ocular R Chemical Abstracts Embase Current Contents - Life Sciences Web of Science Research Alert Scopus EDITORIAL BOARD . Editor-in-Chief: Contact the Editor Neville Osborne, University of Oxford Nuffield Laboratory of Ophthalmology, Headley Way, OX3 9DU, Oxford, United Kingdom Advisory Board P. -
CHEMICO-BIOLOGICAL INTERACTIONS a Journal of Molecular, Cellular and Biochemical Toxicology
CHEMICO-BIOLOGICAL INTERACTIONS A journal of molecular, cellular and biochemical toxicology AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0009-2797 DESCRIPTION . Chemico-Biological Interactions publishes research reports and review articles that examine the molecular, cellular, and/or biochemical basis of toxicologically relevant outcomes. Special emphasis is placed on toxicological mechanisms associated with interactions between chemicals and biological systems. Outcomes may include all traditional endpoints caused by synthetic or naturally occurring chemicals, both in vivo and in vitro. Endpoints of interest include, but are not limited to carcinogenesis, mutagenesis, respiratory toxicology, neurotoxicology, reproductive and developmental toxicology, and immunotoxicology. CBI discourages papers that are descriptive in nature and that do not address toxicological mechanisms (e.g., reports of toxicological effects following chemical exposure in absence of mechanistic experiments). CBI also discourages papers reporting on toxicological effects from materials, such as plant extracts or herbal medicines, that have not been chemically characterized. Benefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services . Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center AUDIENCE . Biochemists, Biologists, Cell Biologists, Toxicologists. IMPACT FACTOR . 2020: 5.192 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 1 Oct 2021 www.elsevier.com/locate/chembioint 1 ABSTRACTING AND INDEXING . -
TOXICOLOGY in VITRO Official Journal of the European Society of Toxicology in Vitro
TOXICOLOGY IN VITRO Official Journal of the European Society of Toxicology in Vitro AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.2 • Impact Factor p.2 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0887-2333 DESCRIPTION . Toxicology in Vitro publishes original research papers, reviews and workshop reports focusing on the application and use of in vitro and in silico systems for toxicological evaluations (collectively described as New Approach Methodologies (NAM)). This includes the utilisation or the development of NAMs for assessing the potential adverse effects of chemicals for human safety assessment. In vitro techniques include primary cells, tissue slices, cell lines and stem cells (adult, embryonic and induced Pluripotent cells) or subcellular preparations thereof. Our journal strongly supports the Reduction, Refinement and Replacement (3R) of animals in toxicology evaluations. This is a wide topic and thus we have certain preferences including: Development of in vitro techniques and their application to research and regulatory use (i.e. 3R principle. Mechanistic underpinning of data. Ability to translate outcome to human safety assessment.We strongly encourage : The use of normal (non-transformed) human cells (where appropriate). Reporting the Short Tandem Repeat (STR) profile of the cells used (especially when cells have been provided as a gift or generated in house). Free access to raw (or primary) data. Appropriate model characterisation. The use (or reduction) of animal free components, including serum. [Especially when the system was already developed under such conditions, such as the HK-2 cell line]. Attention to detailed methodology and appropriate statistics. -
Editorial Board
Editor-in-Chief Prof. Dr. med. Friedrich Paulsen: Institut of Anatomie LST 11, University Erlangen-Nuremberg Universitätsstraße 19, 91054 Erlangen, Germany Tel.: ++49 (0) 9131-8522865; Fax: ++49 (0) 9131-8522862 E-Mail: [email protected] Honorary Editor Prof. Dr. Drs. h. c. W. Kühnel? Editors Mohammad Javed Ali, Telangana, India Friedrich Anderhuber ?, Graz, Austria Doychin Angelov, Cologne, Germany Eveline Baumgart-Vogt, Giessen, Germany Beate Brand-Saberi, Bochum, Germany Ingo Bechmann, Leipzig, Germany Cordian Beyer, Aachen, Germany Lars Bräuer, Erlangen-Nürnberg, Germany Faramarz Dehghani, Halle/Saale, Germany Felix Eckstein, Salzburg, Austria Karlhans Endlich, Greifswald, Germany Süleyman Ergün, Wurzburg, Germany Jochen Fanghänel, Regensburg, Germany Helga Fritsch, Innsbruck, Austria Bernhard Hirt, Tübingen, Germany Friedhelm Heinemann, Greifswald, Germany Masataka Ito, Tokorozawa, Japan Mitsuhiro Kawata, Kyoto, Japan Heike Kielstein, Halle/Saale, Germany Lars Klimaschewski, Innsbruck, Austria Thomas Klonisch, Winnipeg, Manitoba, Canada Horst-Werner Korf, Frankfurt, Germany Christian Krischnek, Regensburg, Germany Rolf Mentlein, Kiel, Germany Adalberto Merighi, Grugliasco (Turin), Italy Ralf Middendorff, Giessen, Germany Christian Mühlfeld, Hannover, Germany Matthias Ochs, Hannover, Germany Thomas Pufe, Aachen, Germany Fabio Quondamatteo, Glasgow, United Kingdom Gabriele Rune, Hamburg, Germany Mugurel Constantin Rusu, Bucharest, Romania Martin Scaal, Cologne, Germany Michael Scholz, Erlangen, Germany Mehdi Shakibaei, Munich, -
Journal of Biotechnology
JOURNAL OF BIOTECHNOLOGY AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0168-1656 DESCRIPTION . Journal of Biotechnology provides a medium for the rapid publication of both full-length articles and short communications on novel and innovative aspects of biotechnology. The Journal will accept papers ranging from genetic or molecular biological positions to those covering biochemical, chemical or bioprocess engineering aspects as well as computer application of new software concepts, provided that in each case the material is directly relevant to biotechnological systems. Papers presenting information of a multidisciplinary nature that would not be suitable for publication in a journal devoted to a single discipline, are particularly welcome. The following areas are covered in the Journal: * Nucleic Acids/Molecular Biology * Physiology/Biochemistry * Biochemical Engineering/Bioprocess Engineering * Industrial Processes/New Products * Medical Biotechnology * Agro- and Food Biotechnology * Genomics and Bioinformatics More information on these areas can be foundhere Benefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services. Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center AUDIENCE . Microbiologists, Molecular Biologists, Environmental Scientists, Genetic Engineers. IMPACT FACTOR . 2020: 3.307 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 28 Sep 2021 www.elsevier.com/locate/jbiotec 1 ABSTRACTING AND INDEXING . -
DEVELOPMENTAL BIOLOGY an Official Journal of the Society for Developmental Biology
DEVELOPMENTAL BIOLOGY An official journal of the Society for Developmental Biology AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.5 ISSN: 0012-1606 DESCRIPTION . Developmental Biology (DB) publishes original research on mechanisms of development, differentiation, growth, homeostasis and regeneration in animals and plants at the molecular, cellular, genetic and evolutionary levels. Areas of particular emphasis include transcriptional control mechanisms, embryonic patterning, cell-cell interactions, growth factors and signal transduction, and regulatory hierarchies in developing plants and animals. Research Areas Include: Regulation of stem cells and regeneration Gene regulatory networks Morphogenesis and self organization Differentiation in vivo and in vitro (organoids) Growth factors and oncogenes Genetics and epigenetics of development Evolution of developmental control Analysis of development at the single cell level DB authors can choose among a selection of article types- research papers, short communications, technical reports, resource papers, reviews and perspectives - and benefit from academic editors who are practicing scientists, fast publication, no color figures or page charges, flexible publication (open access or subscription) and a vast readership with more than 3 million downloads a year. Subscription articles published in Developmental Biology will become accessible to non-subscribers 12 months after publication on ScienceDirect. SDB members benefit from immediate free online access to all published articles. For queries please contact our editorial office at [email protected] AUDIENCE . Cell and Developmental biologists. Focuses on: mechanisms of development, differentiation, and growth in animals and plants. IMPACT FACTOR . 2020: 3.582 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 24 Sep 2021 www.elsevier.com/locate/ydbio 1 ABSTRACTING AND INDEXING . -
Front Matter
ANTICANCER RESEARCH International Journal of Cancer Research and Treatment ISSN: 0250-7005 Volume 40, Number 1, January 2020 Contents Review Current Treatment of Colorectal Liver Metastasis as a Chronic Disease. N.M. DÖRR, M. BARTELS, M.H. MORGUL (Leipzig; Münster, Germany) ......................................................................................................................... 1 Experimental Studies SAHA and EGCG Promote Apoptosis in Triple-negative Breast Cancer Cells, Possibly Through the Modulation of cIAP2. K.L. STEED, H.R. JORDAN, T.O. TOLLEFSBOL (Birmingham, AL, USA) .......................................... 9 Genetic Polymorphisms in IL-10 Promoter Are Associated With Smoking and Prostate Cancer Risk in African Americans. M. ABBAS, T. MASON, A. IBAD, M. KHRAIWESH, V. APPREY, Y. KANAAN, B. WILSON, G. DUNSTON, L. RICKS-SANTI, H. BRIM (Washington, DC; Silver Spring, MD; Hampton, VA, USA) ................. 27 High Expression of c-Met, PKC λ and ALDH1A3 Predicts a Poor Prognosis in Late-stage Breast Cancer. H. MOTOMURA, Y. NOZAKI, C. ONAGA, A. OZAKI, S. TAMORI, T.-A. SHIINA, S. KANAI, C. OHIRA, Y. HARA, Y. HARADA, R. TAKASAWA, T. HANAWA, S.-I. TANUMA, Y. MANO, T. SATO, K. SATO, K. AKIMOTO (Chiba, Japan) ............................................................................................................................................... 35 Targeting Fibroblast Growth Factor Receptor (FGFR) and Phosphoinositide 3-kinase (PI3K) Signaling Pathways in Medulloblastoma Cell Lines. S. HOLZHAUSER, M. LUKOSEVICIUTE, -
Curriculum Vitae
Curriculum Vitae Name and Address: Mohammad Nabiuni (22.04.1967) ID number: 0381613208 No. 43, Mofatteh Ave, Kharazmi University, Department of Cell and Molecular Biology, Faculty of Biological Sciences, Tehran, Iran, Post Cod: 15614, Email Address: [email protected] [email protected] Last Degrees: Post Doc in Neuroscience, University of Central Florida, Orlando, Florida (2007). Ph.D. in Cell and Developmental Biology (Developmental Neuroscience), Manchester, UK, (2006). MSc in Developmental Biology, Tarbiat Moallem University, Tehran, Iran, (1992) BSc in Biology, Urmieh University, Urmieh, Iran, (1989). Current Position: Associate Professor in Cell and Developmental Biology, Department of Cell and Molecular Biology, Kharazmi University, Tehran, Iran. Postgraduate Representative of Cell and Molecular Biology Department in Karaj Campus, Kharazmi University. Technical Experiences: Cell and tissue culture. Proteomoics skills including: Protein identification methods, Mass spectrometry and Electrophoresis (1D &2D), LC/MS methods in proteomics study. Histochemical and Immunocytochemical techniques. Handling and working with laboratory animals (Rodents). Taxidermal skills working with animals for museum and experimental laboratories. Working as co-investigator of project of Iranian Fauna (National project to investigate fauna of Iran) Caspian Sea and Persian Gulf. Teaching Experiences: Four years’ experience in teaching to the PhD, MSc and BSc students in field of Developmental Genetics, Cell and Tissue Culture course, Species and speciation, Evolutionary Biology, Biostatistics and Animal Biodiversity (2007- 2011). Three years experiences as demonstrator at UMIST in Manchester for undergraduate students in field of Histology, Embryology, Cell Biology and Developmental Biology (2002-2005). Eight years’ experience as an instructor of applied biology, experimental embryology, general biology and evolution (Department of Biology, University of Teacher Training, Tehran, Iran, 1992- 2000). -
Journal of Structural Biology
This Number Completes Volume 191 ISSN 1047-8477 Volume 191, Number 3, September 2015 Journal of Structural Biology CoverFinal.indd 1 8/17/15 12:22 PM JOURNAL OF STRUCTURAL BIOLOGY Editors-in-Chief Alasdair C. Steven Wolfgang Baumeister Silver Spring, Maryland, USA Max-Planck-Institut fu¨r Biochemie D-82152 Martinsried bei Mu¨nchen, Germany Associate Editors Bridget Carragher Bauke W. Dijkstra Andrei Lupas The Scripps Research Institute Groningen University, Max-Planck-Institut fuer La Jolla, California Groningen, The Netherlands Entwicklungsbiologie Tuebingen, Germany Daniel J. Mu¨ ller Rajan Sankaranarayanan Stephen Weiner Eidgenossische Technische Hochschule Centre for Cellular and Molecular Biology Weizmann Institute of Science Basel, Switzerland Hyderabad, India Rehovot, Israel Editorial Board Ueli Aebi Nick Grishin Michael Radermacher Maurice E. Mu¨ ller Institute Southwestern Medical Center University of Vermont Basel, Switzerland Dallas, Texas Burlington, Vermont Linda Amos Dorit Hanein Zihe Rao MRC Laboratory of Molecular Biology The Burnham Institute Tsinghua University Cambridge, United Kingdom La Jolla, California Beijing, China Albert J.R. Heck Tim Baker Ivan Raska University of California Utrecht University Utrecht, The Netherlands Academy of Sciences of the Czech Republic San Diego, California Prague, Czech Republic Harald Herrmann Adriaan Bax German Cancer Research Center Felix Rey National Institute of Diabetes and Heidelberg, Germany Institut Pasteur Digestive and Kidney Diseases (NIDDK) Paris, France Bethesda, Maryland -
MICROBIOLOGY, Faculty of Medicine, Institute of Medical Sciences A
FORMAT FOR SUBJECTWISE IDENTIFYING JOURNALS BY THE UNIVERSITIES AND APPROVAL OF THE UGC {Under Clause 6.05 (1) of the University Grants Commission (Minimum Qualifications for appointment of Teacher and Other Academic Staff in Universities and Colleges and Measures for the Maintenance of Standards in Higher Education (4th Amendment), Regulations, 2016} Subject: MICROBIOLOGY, Faculty of Medicine, Institute of Medical Sciences A. Refereed Journals Sl. Name of the Journal Publisher and Year of Hard e-publication ISSN Number Peer / Indexing status. Impact Do you use Any other No. place of Start copies (Yes/No) Refree If indexed, Factor/Rating. any Information publication published Reviewed Name of the Name of the IF exclusion (Yes/No) (Yes/No) indexing data assigning agency. criteria for base Whether covered Research by Thompson & Journals Reuter (Yes/No) 1 2 3 4 5 6 7 8 9 10 11 1 J MOL MICROB BIOTECH, Journal of Basel ; New York : Karger, 1999 Yes e-ISSN: 1660- 1464-1801 Yes Index medicus: 1.701 /Thomson molecular microbiology and biotechnology Switzerland 2412 v1n1,Aug. 1999-; Reuter- Y MEDLINE: v1n1; Aug. 1999-PubMed: v1n1,Aug. 1999- 2 LETT APPL MICROBIOL, Letters in applied Oxford, UK : Published for 1985 Yes Online ISSN: 0266-8254 Yes Index medicus: 1.579/ N microbiology the Society for Applied 1472-765X v26n4,Apr. 1998-; Bacteriology by Blackwell MEDLINE: v26n4,Apr. Scientific Publications, 1998-; PubMed: England v26n4,Apr. 1998- 3 MED MICROBIOL IMMUN, Medical Berlin, New York, 1971 Yes 1432-1831 0300-8584 Yes Index medicus: v157n1, 2.302/ N microbiology and immunology Springer-Verlag, (Electronic) 1971-; MEDLINE: GERMANY v157n1, 1971-; PubMed: v157n1, 1971- 4 METHOD MICROBIOL, Methods in Troy Mo : Academic 1969 Yes 0580-9517 Yes microbiology Press, UNITED STATES 5 MICROB DRUG RESIST, Microbial drug Larchmont, N.Y. -
Normalization and Variance Stabilization of Single-Cell RNA-Seq Data Using Regularized Negative Binomial Regression Christoph Hafemeister1* and Rahul Satija1,2*
Hafemeister and Satija Genome Biology (2019) 20:296 https://doi.org/10.1186/s13059-019-1874-1 Method Open Access Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression Christoph Hafemeister1* and Rahul Satija1,2* Abstract Single-cell RNA-seq (scRNA-seq) data exhibits significant cell-to-cell variation due to technical factors, including the number of molecules detected in each cell, which can confound biological heterogeneity with technical effects. To address this, we present a modeling framework for the normalization and variance stabilization of molecular count data from scRNA-seq experiments. We propose that the Pearson residuals from “regularized negative binomial regression,” where cellular sequencing depth is utilized as a covariate in a generalized linear model, successfully remove the influence of technical characteristics from downstream analyses while preserving biological heterogeneity. Importantly, we show that an unconstrained negative binomial model may overfit scRNA-seq data, and overcome this by pooling information across genes with similar abundances to obtain stable parameter estimates. Our procedure omits the need for heuristic steps including pseudocount addition or log-transformation and improves common downstream analytical tasks such as variable gene selection, dimensional reduction, and differential expression. Our approach can be applied to any UMI-based scRNA-seq dataset and is freely available as part of the R package sctransform, with a direct interface to our single-cell toolkit Seurat. Keywords: Single-cell RNA-seq, Normalization Introduction sampling during sequencing also contribute significantly, In the analysis and interpretation of single-cell RNA- necessitating technical correction [4]. These same chal- seq (scRNA-seq) data, effective pre-processing and nor- lenges apply to bulk RNA-seq workflows, but are exac- malization represent key challenges.