Evolution of a Charismatic Neotropical Clade: Molecular Phylogeny of Tabebuia S
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Ecological Correlates of Ghost Lineages in Ruminants
Paleobiology, 38(1), 2012, pp. 101–111 Ecological correlates of ghost lineages in ruminants Juan L. Cantalapiedra, Manuel Herna´ndez Ferna´ndez, Gema M. Alcalde, Beatriz Azanza, Daniel DeMiguel, and Jorge Morales Abstract.—Integration between phylogenetic systematics and paleontological data has proved to be an effective method for identifying periods that lack fossil evidence in the evolutionary history of clades. In this study we aim to analyze whether there is any correlation between various ecomorphological variables and the duration of these underrepresented portions of lineages, which we call ghost lineages for simplicity, in ruminants. Analyses within phylogenetic (Generalized Estimating Equations) and non-phylogenetic (ANOVAs and Pearson correlations) frameworks were performed on the whole phylogeny of this suborder of Cetartiodactyla (Mammalia). This is the first time ghost lineages are focused in this way. To test the robustness of our data, we compared the magnitude of ghost lineages among different continents and among phylogenies pruned at different ages (4, 8, 12, 16, and 20 Ma). Differences in mean ghost lineage were not significantly related to either geographic or temporal factors. Our results indicate that the proportion of the known fossil record in ruminants appears to be influenced by the preservation potential of the bone remains in different environments. Furthermore, large geographical ranges of species increase the likelihood of preservation. Juan L. Cantalapiedra, Gema Alcalde, and Jorge Morales. Departamento de Paleobiologı´a, Museo Nacional de Ciencias Naturales, UCM-CSIC, Pinar 25, 28006 Madrid, Spain. E-mail: [email protected] Manuel Herna´ndez Ferna´ndez. Departamento de Paleontologı´a, Facultad de Ciencias Geolo´gicas, Universidad Complutense de Madrid y Departamento de Cambio Medioambiental, Instituto de Geociencias, Consejo Superior de Investigaciones Cientı´ficas, Jose´ Antonio Novais 2, 28040 Madrid, Spain Daniel DeMiguel. -
Lecture Notes: the Mathematics of Phylogenetics
Lecture Notes: The Mathematics of Phylogenetics Elizabeth S. Allman, John A. Rhodes IAS/Park City Mathematics Institute June-July, 2005 University of Alaska Fairbanks Spring 2009, 2012, 2016 c 2005, Elizabeth S. Allman and John A. Rhodes ii Contents 1 Sequences and Molecular Evolution 3 1.1 DNA structure . .4 1.2 Mutations . .5 1.3 Aligned Orthologous Sequences . .7 2 Combinatorics of Trees I 9 2.1 Graphs and Trees . .9 2.2 Counting Binary Trees . 14 2.3 Metric Trees . 15 2.4 Ultrametric Trees and Molecular Clocks . 17 2.5 Rooting Trees with Outgroups . 18 2.6 Newick Notation . 19 2.7 Exercises . 20 3 Parsimony 25 3.1 The Parsimony Criterion . 25 3.2 The Fitch-Hartigan Algorithm . 28 3.3 Informative Characters . 33 3.4 Complexity . 35 3.5 Weighted Parsimony . 36 3.6 Recovering Minimal Extensions . 38 3.7 Further Issues . 39 3.8 Exercises . 40 4 Combinatorics of Trees II 45 4.1 Splits and Clades . 45 4.2 Refinements and Consensus Trees . 49 4.3 Quartets . 52 4.4 Supertrees . 53 4.5 Final Comments . 54 4.6 Exercises . 55 iii iv CONTENTS 5 Distance Methods 57 5.1 Dissimilarity Measures . 57 5.2 An Algorithmic Construction: UPGMA . 60 5.3 Unequal Branch Lengths . 62 5.4 The Four-point Condition . 66 5.5 The Neighbor Joining Algorithm . 70 5.6 Additional Comments . 72 5.7 Exercises . 73 6 Probabilistic Models of DNA Mutation 81 6.1 A first example . 81 6.2 Markov Models on Trees . 87 6.3 Jukes-Cantor and Kimura Models . -
Catálogo Chauá
Boletim Chauá 014 ISSN 2595-654X Manual de cultivo 1a edição Cybistax antisyphilitica (Mart.) Mart (Bignoniaceae) Setembro 2018 Nomes comuns: Ecologia: Brasil: caroba-braba, caroba-de-flor-verde, Dispersão: anemocórica1; ipê-verde, ipê-mandioca, ipê-da-várzea, aipê, Habitat: a espécie ocorre comumente no Cerrado cinco-chagas, ipê-mirim, ipê-pardo, sentido restrito, Cerradões e é comum em áreas caroba-do-campo, jacarandá1; alteradas e abertas. É encontrada ainda nas Peru: espeguilla, llangua, llangua-colorado, formações Montana e Submontana de Florestas orcco-huoranhuay, yangua, yangua-caspi, Estacionais e Florestas Ombrófilas1, 2, 12, 13, 14; 2 yangua-tinctoria ; Polinização: feita principalmente por abelhas de Paraguai: taiiy-hoby2. grande e médio porte15; Grupo ecológico: pioneira1, 12; Distribuição: Países: Argentina, Bolívia, Brasil, Equador, Utilidade: Paraguai, Peru e Suriname3, 4; A madeira é comumente utilizada na construção Estados no Brasil: Pará, Tocantins, Bahia, Ceará, civil. É citada a utilização das folhas na produção Maranhão, Piauí, Distrito Federal, Goiás, Mato de corantes e na medicina popular4. Grosso do Sul, Mato Grosso, Espírito Santo, Minas Gerais, Rio de Janeiro, São Paulo, Paraná, Rio Grande do Sul e Santa Catarina2; Características das Ecossistemas: Floresta Estacional Semidecidual, sementes e plântulas: Floresta Ombrófila Densa e Floresta Ombrófila Tipo de semente: ortodoxas9, 16; Mista 1, 2, 11, 12, 13, dos biomas Amazônia, Caatinga, 2,3-3,5 x 4-6 mm4; Cerrado, Mata-Atlântica e Pantanal 2; Tamanho: Sementes por kg: 40.68317; Nível de ameaça: Tipo de plântula: fanerocotiledonar epígea foliar (Figura 1F). Lista IUCN: Não especificado – NE; Lista nacionais: BRASIL: Não especificado 2; Recomendações para o Listas estaduais: Não consta. -
Bignoniaceae Por
fascículo 24 Flora de Veracruz Bignoniaceae por A.H. Gentry Xalapa Ver. septiembre 1982 CO!l/SEJO EDITORIAL Editar Responsable: Arturo Gómez Pompa Editor Ejecutivo: Victoria Sosa Lorin l. Nevling Jr. Nancy P. Moreno Michael Nee Beatriz Ludlow-Wiechers The Flora of Veracruz is an international collaborative project on the parts of investigators at the In,tituto de Investigaciones sobre Recursos Bióticos, at the Field Mu,eum of Natural History and at the Instituto de Biologia, Universidad Nacional Autónoma de México. We acknowledge support in México from the Programa Nacional Indicativo de Ecologia, Consejo Nacional de Ciencia y Tecnologia and the government of the State of Veracruz; and in the Unites States from the National Science Foundation (through grant I!l/T 78-01075) and Harvard University. Flora de Veracruz es un proyecto conjunto del Instituto de Investigaciones sobre Recursos Bióticos, del Field ~Iu,eum of Natural History y del In,tituto de Biologia de la Universidad Nacional Autónoma de México. Agradecem", el apoyo del Programa !l/acional Indicativo de Ecologia del Consejo Nacional de Ciencia y Tecnologia, del Gobierno del Estado de Veracruz de México, de la National Science Foundation (INT 78-01075) Y de Harvard University de lo.' Estados Unidos. INlREB 82-01-004 ©1982 In,tituto Nacional de Investigaciones sobre Recursos Bióticos. Apdo. Postal 63, Xalapa Veracmz. FLORA DE VERACRUZ Publicada por el Instituto Nacianal de Investigacianes sobre Recursos Bióticos Xalapa, Veracruz, México. FasCÍculo 24 Septiembre 1982 BIGNONIACEAE Por Alwyn H. Gentry Missouri Botanical Garden Arboles, arbustos o trepadoras leñosas, raras veces herbáceas; escamas externas de las yemas axilares frecuentemente pseudoestipulares o algu. -
Antimicrobial Activity of Crescentia Cujete
AsianVol. 6 ·Journal January of2016 Health · International Volume 6 Peer Reviewed Journal Asian Journal of Health Accredited Category B CHED Journal Accreditation Service Print ISSN 2094-9243 · Online: ISSN: 2244-047X Antimicrobial Activity of Crescentia cujete MARILOU O. HONCULADA ORCID No. 0000-0002-5754-0337 [email protected] Liceo de Cagayan University Cagayan de Oro City, Philippines MICHELLE T. MABASA ORCID No. 0000-0001-8502-9803 [email protected] Liceo de Cagayan University Cagayan de Oro City, Philippines ABSTRACT The Philippines is known for being an agricultural country with different varieties of plants that have medicinal potential. This study focused on the antimicrobial potential of the fruit of Crescentia cujete or Calabash tree against common infections Staphylococcus aureus, a gram-positive bacteria, and Escherichia coli which is a gram- negative bacterium. Fruit extracts were obtained by maceration with ethanol for 24 hours at room temperature. The experimental research design was used through disc diffusion method. Findings of this study, however, revealed no antibacterial effect of the fruit extract against Staphylococcus aureus and Escherichia coli. Keywords: Crescentia cujete, antimicrobial, Staphylococcus aureus, Escherichia coli INTRODUCTION The healing power of plants is a widely explored study. Plants have been traditionally used for the treatment of infection of different aetiology. More so now with the development of bacterial resistance of some microorganisms due mainly to the abuse of antibiotic use. The increasing prevalence of multidrug-resistant strains of bacteria and the recent appearance of strains with reduced susceptibility to antibiotic raises the spectre of untreatable bacterial infections and adds urgency to the search for new infection-fighting strategies (Sieradzki, Roberts, Haber & Tomasz, 1999) as 80 International Peer Reviewed Journal cited by Mahbub et al. -
Phylogeny of a Rapidly Evolving Clade: the Cichlid Fishes of Lake Malawi
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 5107–5110, April 1999 Evolution Phylogeny of a rapidly evolving clade: The cichlid fishes of Lake Malawi, East Africa (adaptive radiationysexual selectionyspeciationyamplified fragment length polymorphismylineage sorting) R. C. ALBERTSON,J.A.MARKERT,P.D.DANLEY, AND T. D. KOCHER† Department of Zoology and Program in Genetics, University of New Hampshire, Durham, NH 03824 Communicated by John C. Avise, University of Georgia, Athens, GA, March 12, 1999 (received for review December 17, 1998) ABSTRACT Lake Malawi contains a flock of >500 spe- sponsible for speciation, then we expect that sister taxa will cies of cichlid fish that have evolved from a common ancestor frequently differ in color pattern but not morphology. within the last million years. The rapid diversification of this Most attempts to determine the relationships among cichlid group has been attributed to morphological adaptation and to species have used morphological characters, which may be sexual selection, but the relative timing and importance of prone to convergence (8). Molecular sequences normally these mechanisms is not known. A phylogeny of the group provide the independent estimate of phylogeny needed to infer would help identify the role each mechanism has played in the evolutionary mechanisms. The Lake Malawi cichlids, however, evolution of the flock. Previous attempts to reconstruct the are speciating faster than alleles can become fixed within a relationships among these taxa using molecular methods have species (9, 10). The coalescence of mtDNA haplotypes found been frustrated by the persistence of ancestral polymorphisms within populations predates the origin of many species (11). In within species. -
Pollination of Cultivated Plants in the Tropics 111 Rrun.-Co Lcfcnow!Cdgmencle
ISSN 1010-1365 0 AGRICULTURAL Pollination of SERVICES cultivated plants BUL IN in the tropics 118 Food and Agriculture Organization of the United Nations FAO 6-lina AGRICULTUTZ4U. ionof SERNES cultivated plans in tetropics Edited by David W. Roubik Smithsonian Tropical Research Institute Balboa, Panama Food and Agriculture Organization of the United Nations F'Ø Rome, 1995 The designations employed and the presentation of material in this publication do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. M-11 ISBN 92-5-103659-4 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying or otherwise, without the prior permission of the copyright owner. Applications for such permission, with a statement of the purpose and extent of the reproduction, should be addressed to the Director, Publications Division, Food and Agriculture Organization of the United Nations, Viale delle Terme di Caracalla, 00100 Rome, Italy. FAO 1995 PlELi. uion are ted PlauAr David W. Roubilli (edita Footli-anal ISgt-iieulture Organization of the Untled Nations Contributors Marco Accorti Makhdzir Mardan Istituto Sperimentale per la Zoologia Agraria Universiti Pertanian Malaysia Cascine del Ricci° Malaysian Bee Research Development Team 50125 Firenze, Italy 43400 Serdang, Selangor, Malaysia Stephen L. Buchmann John K. S. Mbaya United States Department of Agriculture National Beekeeping Station Carl Hayden Bee Research Center P. -
Coleeae: Crescentieae: Oroxyleae
Gasson & Dobbins - Trees versus lianas in Bignoniaceae 415 Schenck, H. 1893. Beitriige zur Anatomie Takhtajan, A. 1987. Systema Magnoliophy der Lianen. In: A.F.W. Schimper (ed.): torum. Academia Scientiarum U.R.S.S., 1-271. Bot. Mitt. aus den Tropen. Heft Leningrad. 5, Teil2. Gustav Fischer, Jena. Wheeler, E.A., R.G. Pearson, C.A. La Spackman, W. & B.G.L. Swamy. 1949. The Pasha, T. Zack & W. Hatley. 1986. Com nature and occurrence of septate fibres in puter-aided Wood Identification. Refer dicotyledons. Amer. 1. Bot. 36: 804 (ab ence Manual. North Carolina Agricultural stract). Research Service Bulletin 474. Sprague, T. 1906. Flora of Tropical Africa. Willis, J. C. 1973. A dictionary of the flower Vol. IV, Sect. 2, Hydrophyllaceae to. Pe ing plants. Revised by H. K. Airy Shaw. daliaceae. XCVI, Bignoniaceae: 512-538. 8th Ed. Cambridge Univ. Press. Steenis, C.G.G.J. van. 1977. Bignoniaceae. Wolkinger, F. 1970. Das Vorkommen leben In Flora Malesiana I, 8 (2): 114-186. der Holzfasem in Striiuchem und Bliumen. Sijthoff & Noordhoff, The Netherlands. Phyton (Austria) 14: 55-67. Stem, W. L. 1988. Index Xylariorum 3. In Zimmermann, M.H. 1983. Xylem structure stitutional wood collections of the world. and the ascent of sap. Springer Verlag, IAWA Bull. n.s. 9: 203-252. Berlin, Heidelberg, New York, Tokyo. APPENDIX The species examined are listed below. The country or geographical region of origin is that from which the specimen came, not necessarily its native habitat. If the exact source of the specimen is not known, but the native region is, this is in parentheses. -
Reproductive Biology of the Sausage Tree (Kigelia Africana) in Kruger National Park, South Africa
KOEDOE - African Protected Area Conservation and Science ISSN: (Online) 2071-0771, (Print) 0075-6458 Page 1 of 7 Short Communication Reproductive biology of the sausage tree (Kigelia africana) in Kruger National Park, South Africa Authors: Kigelia africana has large flowers that are vertebrate pollinated and very large fruits that are 1 Jah Namah likely to be vertebrate dispersed. Our field surveys of size–class distributions ofK. africana in Jeremy J. Midgley1 Laurence M. Kruger1,2 the southern Kruger National Park (KNP) suggest a lack of recruitment. This is possibly the result of a failure of mutualistic relationships with vertebrate dispersers and/or pollinators. Affiliations: Breeding system experiments indicated that K. africana is an obligate out-crosser. Despite 1Department of Biological being primarily adapted for bat pollination, in KNP that K. africana is presently mainly Sciences, University of Cape Town, Cape Town, pollinated by a diversity of largely facultatively nectarivorous bird species. Fruit-set is high, South Africa although trees isolated by > 50 m were found to suffer depressed seed output. Our preliminary investigation of dispersal suggests that fruits are largely ignored and are thus weakly 2Organisation for Tropical attractive to potential dispersers. Seedlings placed out in the field in KNP suffered high levels Studies, Skukuza, South Africa (> 50%) of mortality compared to 17.5% in control plots. This threefold difference is the result Corresponding author: of herbivory over a 2-month period. In summary, the adult centric population structure is Jeremy Midgley, probably not because of pollen or seed limitation but may result from dispersal limitation or [email protected] excessive herbivory. -
Check List of Wild Angiosperms of Bhagwan Mahavir (Molem
Check List 9(2): 186–207, 2013 © 2013 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution Check List of Wild Angiosperms of Bhagwan Mahavir PECIES S OF Mandar Nilkanth Datar 1* and P. Lakshminarasimhan 2 ISTS L (Molem) National Park, Goa, India *1 CorrespondingAgharkar Research author Institute, E-mail: G. [email protected] G. Agarkar Road, Pune - 411 004. Maharashtra, India. 2 Central National Herbarium, Botanical Survey of India, P. O. Botanic Garden, Howrah - 711 103. West Bengal, India. Abstract: Bhagwan Mahavir (Molem) National Park, the only National park in Goa, was evaluated for it’s diversity of Angiosperms. A total number of 721 wild species belonging to 119 families were documented from this protected area of which 126 are endemics. A checklist of these species is provided here. Introduction in the National Park are Laterite and Deccan trap Basalt Protected areas are most important in many ways for (Naik, 1995). Soil in most places of the National Park area conservation of biodiversity. Worldwide there are 102,102 is laterite of high and low level type formed by natural Protected Areas covering 18.8 million km2 metamorphosis and degradation of undulation rocks. network of 660 Protected Areas including 99 National Minerals like bauxite, iron and manganese are obtained Parks, 514 Wildlife Sanctuaries, 43 Conservation. India Reserves has a from these soils. The general climate of the area is tropical and 4 Community Reserves covering a total of 158,373 km2 with high percentage of humidity throughout the year. -
Bignoniaceae 1.3.3.3.6.A
111 1.3.3.3.6. Bignoniaceae 1.3.3.3.6.a. Características ¾ Porte: árboles, arbustos y lianas, ramas a menudo lenticeladas. ¾ Hojas: generalmente opuestas, decusadas, a menudo compuestas, con un folíolo en las hojas de las trepadoras, transformado en un zarcillo. ¾ Flores: perfectas, muy vistosas, apenas zigomorfas hasta sub-bilabiadas generalmente en inflorescencias cimosas. ¾ Perianto: cáliz 5-mero, tubuloso, acampanado, espatiforme, truncado o acodado a veces bilabiado, corola 5-lobulada, acampanada-embudada algo doblada, con la misma estructura básica. ¾ Androceo: 4 (2) estambres didínamos, insertos en el tubo corolino, estaminodio 1 (rara vez 3), más cortos que los estambres (en Jacaranda más desarrollado y barbado), con los filamentos recurvos (los estambres ausentes pueden estar reemplazados por estaminodios); anteras con 2 tecas característicamente divergentes. ¾ Gineceo: ovario súpero, 2 carpelos soldados, 2 (1-3) locular con numerosos óvulos axilares, generalmente con largo estilo y estigma bilobado, a menudo papiloso, se puede presentar un disco nectarífero. ¾ Fruto: cápsula septicida o loculicida, rara vez baya. ¾ Semilla: sin endosperma, aplanadas, aladas, con ala lateral o circular, hialina o laciniada. Jacaranda mimosifolia Handroanthus heptaphyllus Flor con pétalos y sépalos soldados Corola Corte longitudinal de la flor con estambres y estaminodio Corte longitudinal de la flor Semilla alada Cáliz con ovario Fruto Semilla alada Detalle del estaminodio Cáliz y gineceo Dibujos: Daniel Cian 3.3.6.b. Biología Floral: Tecoma stans posee polinización entomófila u ornitófila (Lahitte et al., 2001). Diversidad Vegetal- Facultad de Ciencias Exactas y Naturales y Agrimensura (UNNE) CORE EUDICOTILEDÓNEAS- Asterídeas-Euasterídeas I: Lamiales: Bignoniaceae 112 1.3.3.3.6.c. -
Bignoniaceae)
Systematic Botany (2007), 32(3): pp. 660–670 # Copyright 2007 by the American Society of Plant Taxonomists Taxonomic Revisions in the Polyphyletic Genus Tabebuia s. l. (Bignoniaceae) SUSAN O. GROSE1 and R. G. OLMSTEAD Department of Biology, University of Washington, Box 355325, Seattle, Washington 98195 U.S.A. 1Author for correspondence ([email protected]) Communicating Editor: James F. Smith ABSTRACT. Recent molecular studies have shown Tabebuia to be polyphyletic, thus necessitating taxonomic revision. These revisions are made here by resurrecting two genera to contain segregate clades of Tabebuia. Roseodendron Miranda consists of the two species with spathaceous calices of similar texture to the corolla. Handroanthus Mattos comprises the principally yellow flowered species with an indumentum of hairs covering the leaves and calyx. The species of Handroanthus are also characterized by having extremely dense wood containing copious quantities of lapachol. Tabebuia is restricted to those species with white to red or rarely yellow flowers and having an indumentum of stalked or sessile lepidote scales. The following new combinations are published: Handroanthus arianeae (A. H. Gentry) S. Grose, H. billbergii (Bur. & K. Schum). S. Grose subsp. billbergii, H. billbergii subsp. ampla (A. H. Gentry) S. Grose, H. botelhensis (A. H. Gentry) S. Grose, H. bureavii (Sandwith) S. Grose, H. catarinensis (A. H. Gentry) S. Grose, H. chrysanthus (Jacq.) S. Grose subsp. chrysanthus, H. chrysanthus subsp. meridionalis (A. H. Gentry) S. Grose, H. chrysanthus subsp. pluvicolus (A. H. Gentry) S. Grose, H. coralibe (Standl.) S. Grose, H. cristatus (A. H. Gentry) S. Grose, H. guayacan (Seemann) S. Grose, H. incanus (A. H.