Interspecific Hybridization of Fragaria Vesca Subspecies with F
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Characteristics of Fragaria Vesca Yield Parameters and Anthocyanin Accumulation Under Water Deficit Stress
plants Article Characteristics of Fragaria vesca Yield Parameters and Anthocyanin Accumulation under Water Deficit Stress Rytis Rugienius 1,* , Vidmantas Bendokas 1 , Tadeusas Siksnianas 1, Vidmantas Stanys 1, Audrius Sasnauskas 1 and Vaiva Kazanaviciute 2 1 Lithuanian Research Centre for Agriculture and Forestry, Department of Orchard Plant Genetics and Biotechnology, Institute of Horticulture, LT-54333 Babtai, Lithuania; [email protected] (V.B.); [email protected] (T.S.); [email protected] (V.S.); [email protected] (A.S.) 2 Department of Eukaryote Gene Engineering, Institute of Biotechnology, Vilnius University, LT-10257 Vilnius, Lithuania; [email protected] * Correspondence: [email protected]; Tel.: +370-37-555253 Abstract: Plants exposed to drought stress conditions often increase the synthesis of anthocyanins—natural plant pigments and antioxidants. However, water deficit (WD) often causes significant yield loss. The aim of our study was to evaluate the productivity as well as the anthocyanin content and composition of berries from cultivated Fragaria vesca “Rojan” and hybrid No. 17 plants (seedlings) grown under WD. The plants were grown in an unheated greenhouse and fully irrigated (control) or irrigated at 50% and 25%. The number of berries per plant and the berry weight were evaluated every 4 days. The anthocyanin content and composition of berries were evaluated with the same periodicity using HPLC. The effect of WD on the yield parameters of two evaluated F. vesca genotypes differed depending on the harvest time. The cumulative yield of plants under WD was not less Citation: Rugienius, R.; Bendokas, V.; Siksnianas, T.; Stanys, V.; Sasnauskas, than that of the control plants for 20–24 days after the start of the experiment. -
Host–Pathogen Interactions Between Xanthomonas Fragariae and Its Host Fragaria × Ananassa Investigated with a Dual RNA-Seq Analysis
microorganisms Article Host–Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis 1, 2 1 1, Michael Gétaz y, Joanna Puławska , Theo H.M. Smits and Joël F. Pothier * 1 Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland; [email protected] (M.G.); [email protected] (T.H.S.) 2 Department of Phytopathology, Research Institute of Horticulture, 96-100 Skierniewice, Poland; [email protected] * Correspondence: [email protected]; Tel.: +41-58-934-53-21 Present address: Illumina Switzerland GmbH, CH-8008 Zurich, Switzerland. y Received: 22 July 2020; Accepted: 14 August 2020; Published: 18 August 2020 Abstract: Strawberry is economically important and widely grown, but susceptible to a large variety of phytopathogenic organisms. Among them, Xanthomonas fragariae is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, the gene expression of both plant and bacteria in planta was analyzed at two time points, 12 and 29 days post inoculation, in order to compare the pathogen and host response between the stages of early visible and of well-developed symptoms. Among 28,588 known genes in strawberry and 4046 known genes in X. fragariae expressed at both time points, a total of 361 plant and 144 bacterial genes were significantly differentially expressed, respectively. The identified higher expressed genes in the plants were pathogen-associated molecular pattern receptors and pathogenesis-related thaumatin encoding genes, whereas the more expressed early genes were related to chloroplast metabolism as well as photosynthesis related coding genes. -
Diversity of Volatile Patterns in Sixteen Fragaria Vesca L. Accessions in Comparison to Cultivars of Fragaria ×Ananassa D
Journal of Applied Botany and Food Quality 86, 37 - 46 (2013), DOI:10.5073/JABFQ.2013.086.006 1Julius Kühn-Institute (JKI), Federal Research Centre for Cultivated Plants, Institute for Ecological Chemistry, Plant Analysis and Stored Product Protection, Quedlinburg, Germany 2Hansabred GmbH & Co. KG, Dresden, Germany Diversity of volatile patterns in sixteen Fragaria vesca L. accessions in comparison to cultivars of Fragaria ×ananassa D. Ulrich1*, K. Olbricht 2 (Received April 4, 2013) Summary of the latter was described as much more sweetish-aromatic than those of the F. ×ananassa cultivars but with some astringent and Fragaria vesca is the most distributed wild species in the genus bitter impressions (ULRICH et al., 2007). F. vesca is characterized by Fragaria. Due to this biogeography, a high diversity is to expect. outstanding flowery notes like violet and acacia. But especially in During two harvest seasons, sixteen accessions from different lo- the white mutant F. vesca f. alba (Ehrh.) Staudt, these impressions cations from the most eastern habitat at Lake Baikal in Siberia, from sometimes were described by the testers with negative statements Middle and Southern Europe and Northern Europe with Scandinavia like over-aromatic and perfume-like. By gas chromatography- and Iceland were investigated as well as two of the three described olfactometry (GCO) experiments, the flowery impressions were North American subspecies and three F. vesca cultivars. Five very assigned to the content of the aromatic ester methyl anthranilate distinct European F. ×ananassa cultivars were chosen to serve as a whereas the herbaceous impressions are caused by a high content comparison. Beside brix value and acid contents, the aroma patterns of terpenoids. -
Download Download
Acta Sci. Pol. Hortorum Cultus, 19(1) 2020, 21–39 https://czasopisma.up.lublin.pl/index.php/asphc ISSN 1644-0692 e-ISSN 2545-1405 DOI: 10.24326/asphc.2020.1.3 ORIGINAL PAPER Accepted: 16.04.2019 ASSESSMENT OF PHYSIOLOGICAL AND MORPHOLOGICAL TRAITS OF PLANTS OF THE GENUS Fragaria UNDER CONDITIONS of water deficit – a study review Marta Rokosa , Małgorzata Mikiciuk West Pomeranian University of Technology in Szczecin Department of Plant Physiology and Biochemistry, Juliusza Słowackiego 17, 70-953 Szczecin, Poland ABSTRACT The genus Fragaria belongs to the Rosaceae family. The most popular representatives of this species are the strawberry (Fragaria × ananassa Duch.) and wild strawberry (Fragaria vesca L.), whose taste and health benefits are appreciated by a huge number of consumers. The cultivation of Fragaria plants is widespread around the world, with particular emphasis on the temperate climate zone. Increasingly occurring weather anomalies, including drought phenomena, cause immense losses in crop cultivation. The Fragaria plant species are very sensitive to drought, due to the shallow root system, large leaf area and the high water content of the fruit. There have been many studies on the influence of water deficit on the morphological, biochemical and physiological features of strawberries and wild strawberries. There is a lack of research summarizing the current state of knowledge regarding of specific species response to water stress. The aim of this study was to combine and compare data from many research carried out and indicate the direction of future research aimed at improving the resistance of Fragaria plants species to stress related to drought. -
Tesis Doctoral
UNIVERSIDAD DE CÓRDOBA FACULTAD DE CIENCIAS DEPARTAMENTO DE BIOQUÍMICA Y BIOLOGÍA MOLECULAR TESIS DOCTORAL "FUNCTIONAL CHARACTERIZATION OF STRAWBERRY ( FRAGARIA x ANANASSA ) FRUIT- SPECIFIC AND RIPENING-RELATED GENES INVOLVED IN AROMA AND ANTHOCHYANINS BIOSYNTHESIS" Memoria de Tesis Doctoral presentada por Guadalupe Cumplido Laso, Licenciada en Biología, para optar al grado de Doctor por la Universidad de Córdoba con la mención de Doctorado Internacional . Córdoba, Diciembre de 2012 TITULO: FUNCTIONAL CHARACTERIZATION OF STRAWBERRY (FRAGARIA x ANANASSA) FRUIT-SPECIFIC AND RIPENING-RELATED GENES INVOLVED IN AROMA AND ANTHOCHYANINS BIOSYNTHESIS AUTOR: GUADALUPE CUMPLIDO LASO © Edita: Servicio de Publicaciones de la Universidad de Córdoba. Campus de Rabanales Ctra. Nacional IV, Km. 396 A 14071 Córdoba www.uco.es/publicaciones [email protected] TÍTULO DE LA TESIS: “ Functional characterization of strawberry ( Fragaria x ananassa ) fruit-specific and ripening-related genes involved in aroma and anthocyanins biosynthesis ” DOCTORANDO/A: Guadalupe Cumplido Laso INFORME RAZONADO DEL/DE LOS DIRECTOR/ES DE LA TESIS (se hará mención a la evolución y desarrollo de la tesis, así como a trabajos y publicaciones derivados de la misma). La Lda. Guadalupe Cumplido Laso ha desarrollado en el seno del grupo BIO-278 liderado por el Dr. Juan Muñoz Blanco el trabajo de investigación llamado “ Functional characterization of strawberry ( Fragaria x ananassa ) fruit-specific and ripening- related genes involved in aroma and anthocyanins biosynthesis ” que constituye el tema de su tesis doctoral. Este trabajo de investigación ha sido dirigido y supervisado por el Dr. Juan Muñoz Blanco y la Dra. Rosario Blanco Portales, ambos miembros del Departamento de Bioquímica y Biología Molecular de la Universidad de Córdoba. -
Genotyping-By-Sequencing in an Orphan Plant Species Physocarpus Opulifolius Helps Identify the Evolutionary Origins of the Genus
Buti et al. BMC Res Notes (2016) 9:268 DOI 10.1186/s13104-016-2069-4 BMC Research Notes SHORT REPORT Open Access Genotyping‑by‑sequencing in an orphan plant species Physocarpus opulifolius helps identify the evolutionary origins of the genus Prunus Matteo Buti1*, Daniel J. Sargent1,3, Khethani G. Mhelembe2, Pietro Delfino1, Kenneth R. Tobutt2 and Riccardo Velasco1 Abstract Background: The Rosaceae family encompasses numerous genera exhibiting morphological diversification in fruit types and plant habit as well as a wide variety of chromosome numbers. Comparative genomics between various Rosaceous genera has led to the hypothesis that the ancestral genome of the family contained nine chromosomes, however, the synteny studies performed in the Rosaceae to date encompass species with base chromosome num- bers x 7 (Fragaria), x 8 (Prunus), and x 17 (Malus), and no study has included species from one of the many Rosaceous= genera containing= a base chromosome= number of x 9. = Results: A genetic linkage map of the species Physocarpus opulifolius (x 9) was populated with sequence char- acterised SNP markers using genotyping by sequencing. This allowed for= the first time, the extent of the genome diversification of a Rosaceous genus with a base chromosome number of x 9 to be performed. Orthologous loci distributed throughout the nine chromosomes of Physocarpus and the eight= chromosomes of Prunus were identified which permitted a meaningful comparison of the genomes of these two genera to be made. Conclusions: The study revealed a high level of macro-synteny between the two genomes, and relatively few chro- mosomal rearrangements, as has been observed in studies of other Rosaceous genomes, lending further support for a relatively simple model of genomic evolution in Rosaceae. -
The History of Genome Mapping in Fragaria Spp
Journal of Horticultural Research 2014, vol. 22(2): 93-103 DOI: 10.2478/johr-2014-0026 _______________________________________________________________________________________________________ THE HISTORY OF GENOME MAPPING IN FRAGARIA SPP. Abdel-Rahman Moustafa Abdel-Wahab MOHAMED1, Tomasz JĘCZ2, Małgorzata KORBIN2* 1Department of Horticulture, Faculty of Agriculture, University of Minia, Egypt 2Department of Horticultural Plant Breeding, Laboratory of Unconventional Breeding Methods Research Institute of Horticulture, Skierniewice, Poland Received: November 25, 2014; Accepted: December 12, 2014 ABSTRACT This overview summarizes the research programs devoted to mapping the genomes within Fragaria genus. A few genetic linkage maps of diploid and octoploid Fragaria species as well as impressive physical map of F. vesca were developed in the last decade and resulted in the collection of data useful for further fundamental and applied studies. The information concerning the rules for proper preparation of mapping population, the choice of markers useful for generating linkage map, the saturation of existing maps with new markers linked to economically important traits, as well as problems faced during mapping process are presented in this paper. Key words: woodland strawberry, cultivated strawberry, linkage, physical map INTRODUCTION artificial chromosome (YAC) cloning vectors. In comparison to a genetic map, providing insights Genome maps, displaying the position of into the relative position of loci on chromosomes, genes along chromosomes within the genome of an the physical map is more “accurate” representation organism, are classified as genetic and physical maps of the genome (Brown 2002). (Brown 2002). In theory, both maps should provide Regardless of the strategy used, the essence of the same information concerning chromosomal as- all mapping approaches is to localise a collection of signment, and the order of loci. -
The Best Paper Ever
Universidade de São Paulo Escola Superior de Agricultura “Luiz de Queiroz” Métodos de conservação pós-colheita de pedúnculos de caju Juliana Tauffer de Paula Tese apresentada para obtenção do título de Doutora em Ciências. Área de concentração: Fitotecnia Piracicaba 2017 Juliana Tauffer de Paula Engenheira Agrônoma Métodos de conservação pós-colheita de pedúnculos de caju Orientador: Prof. Dr. RICARDO ALFREDO KLUGE Tese apresentada para obtenção do título de Doutora em Ciências. Área de concentração: Fitotecnia Piracicaba 2017 3 RESUMO Métodos de conservação pós-colheita de pedúnculos de caju O pedúnculo de caju é um pseudofruto carnoso, suculento, de ótimo aroma, apresenta altos teores de ácido ascórbico e compostos fenólicos. Apesar da condição nutricional, a vida útil e a comercialização in natura do pedúnculo é limitada principalmente devido a sua alta perecibilidade e susceptibilidade ao ataque de microrganismos patogênicos. O objetivo do trabalho foi estudar métodos de conservação pós-colheita de pedúnculos de caju, entre eles: radiação gama, quitosana e atmosfera modificada passiva, de forma primeiramente individual para avaliar o efeito na conservação dos principais atributos físico-químicos, nutricionais e nos aspectos fisiológicos e depois em combinação para verificar efeitos sobre a vida útil, na atividade antioxidante e no perfil de compostos voláteis. No experimento de irradiação a dose de 2,0 kGy reduziu drasticamente a incidência de podridão mas ocasionou alta perdas de firmeza, ácido ascórbico, fenólicos e de pigmentos. A dose de 0,5 kGy proporcionou a melhor qualidade dos pedúnculos, pois além de reduzir podridões, reduziu perda de massa, manteve valores adequados de firmeza e, diferente da maior dose, não interferiu na pigmentação da epiderme, além de manter altos os níveis de compostos fenólicos e reduzir a adstringência. -
A World of Extraordinary Flavors in Specialty and Exotic Strawberries
Market Watch: A world of extraordinary flavors in specialty and exotic strawberries Commercial varieties are bred for firmness and shelf life. But older, more fragile breeds can be intensely aromatic and delicious. If only more growers would produce them. Wild strawberries grown by Pudwill Berry Farms in Nipomo at the Santa Monica farmers market. (David Karp / For The Times / July 1, 2009) By David Karp, Special to the Los Angeles Times April 16, 2010 The mild climate along California's coast enables its strawberry growers to dominate commercial production of this fruit; last year they accounted for some 88% of the nation's crop. For strawberry lovers, that's both a blessing, of abundance and reasonable prices, and a curse, because local growers are focused almost exclusively on varieties suited to industrial production. Compared with other states where local sales predominate, California strawberry breeders prioritize firmness and long shelf life, often at the expense of flavor. Our farmers market growers can offer riper fruit than is harvested for supermarkets, but they are stuck using commercial varieties because no one in California is breeding new varieties suited for direct sales and nurseries, for the most part, don't want to be bothered with older varieties. That's a shame because there's a whole world of different and extraordinary flavors that could await enterprising growers and their customers. Last week, I wrote a buying guide to farmers market strawberries focused on standard varieties from the University of California breeding program. Let us now consider specialty and exotic strawberry varieties, both from farmers markets and further afield. -
The History of Genome Mapping in Fragaria Spp
Journal of Horticultural Research 2014, vol. 22(2): 93-103 DOI: 10.2478/johr-2014-0026 _______________________________________________________________________________________________________ THE HISTORY OF GENOME MAPPING IN FRAGARIA SPP. Abdel-Rahman Moustafa Abdel-Wahab MOHAMED1, Tomasz JĘCZ2, Małgorzata KORBIN2* 1Department of Horticulture, Faculty of Agriculture, University of Minia, Egypt 2Department of Horticultural Plant Breeding, Laboratory of Unconventional Breeding Methods Research Institute of Horticulture, Skierniewice, Poland Received: November 25, 2014; Accepted: December 12, 2014 ABSTRACT This overview summarizes the research programs devoted to mapping the genomes within Fragaria genus. A few genetic linkage maps of diploid and octoploid Fragaria species as well as impressive physical map of F. vesca were developed in the last decade and resulted in the collection of data useful for further fundamental and applied studies. The information concerning the rules for proper preparation of mapping population, the choice of markers useful for generating linkage map, the saturation of existing maps with new markers linked to economically important traits, as well as problems faced during mapping process are presented in this paper. Key words: woodland strawberry, cultivated strawberry, linkage, physical map INTRODUCTION artificial chromosome (YAC) cloning vectors. In comparison to a genetic map, providing insights Genome maps, displaying the position of into the relative position of loci on chromosomes, genes along chromosomes within the genome of an the physical map is more “accurate” representation organism, are classified as genetic and physical maps of the genome (Brown 2002). (Brown 2002). In theory, both maps should provide Regardless of the strategy used, the essence of the same information concerning chromosomal as- all mapping approaches is to localise a collection of signment, and the order of loci. -
Molecular Phylogenetics and Evolution 66 (2013) 17–29
Molecular Phylogenetics and Evolution 66 (2013) 17–29 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing ⇑ Wambui Njuguna a, , Aaron Liston b, Richard Cronn c, Tia-Lynn Ashman d, Nahla Bassil e a Department of Horticulture, Oregon State University, ALS 4017, Corvallis, OR 97331, USA b Department of Botany and Plant Pathology, Oregon State University, Cordley Hall 2082, Corvallis, OR 97331, USA c Pacific Northwest Research Station, United States Forest Service, 3200 SW Jefferson Way, Corvallis, OR 97331, USA d Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA e United States Department of Agriculture, Agricultural Research Service, National Clonal Germplasm Repository, Corvallis, OR 97333, USA article info abstract Article history: The cultivated strawberry is one of the youngest domesticated plants, developed in France in the 1700s Received 13 February 2012 from chance hybridization between two western hemisphere octoploid species. However, little is known Revised 20 August 2012 about the evolution of the species that gave rise to this important fruit crop. Phylogenetic analysis of Accepted 30 August 2012 chloroplast genome sequences of 21 Fragaria species and subspecies resolves the western North Ameri- Available online 14 September 2012 can diploid F. vesca subsp. bracteata as sister to the clade of octoploid/decaploid species. No extant tetrap- loids or hexaploids are directly involved in the maternal ancestry of the octoploids. Keywords: There is strong geographic segregation of chloroplast haplotypes in subsp. bracteata, and the gynodioe- Plastome cious Pacific Coast populations are implicated as both the maternal lineage and the source of male-ste- Polyploidy Self-compatibility rility in the octoploid strawberries. -
Population Genetic Analysis of a Global Collection of Fragaria Vesca Using Microsatellite Markers
RESEARCH ARTICLE Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers Hrannar SmaÂri Hilmarsson1, Timo HytoÈ nen2,3, Sachiko Isobe4, Magnus GoÈ ransson1,5, Tuomas Toivainen2, Jo n Hallsteinn Hallsson1* 1 Faculty of Agricultural and Environmental Sciences, Agricultural University of Iceland, Keldnaholt, Reykjavik, Iceland, 2 Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland, 3 Department of Biosciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland, 4 Kazusa DNA Research Institute (KDRI), Kisarazu, Chiba, Japan, 5 Department of Plant Sciences, a1111111111 Norwegian University of Life Sciences, Ås, Norway a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 Abstract The woodland strawberry, Fragaria vesca, holds great promise as a model organism. It not only represents the important Rosaceae family that includes economically important species OPEN ACCESS such as apples, pears, peaches and roses, but it also complements the well-known model Citation: Hilmarsson HS, HytoÈnen T, Isobe S, organism Arabidopsis thaliana in key areas such as perennial life cycle and the development GoÈransson M, Toivainen T, Hallsson JH (2017) of fleshy fruit. Analysis of wild populations of A. thaliana has shed light on several important Population genetic analysis of a global collection of developmental pathways controlling, for example, flowering time and plant growth, suggest- Fragaria vesca using microsatellite markers. PLoS ONE 12(8): e0183384. https://doi.org/10.1371/ ing that a similar approach using F. vesca might add to our understanding on the develop- journal.pone.0183384 ment of rosaceous species and perennials in general. As a first step, 298 F. vesca plants Editor: David D Fang, USDA-ARS Southern were analyzed using microsatellite markers with the primary aim of analyzing population Regional Research Center, UNITED STATES structure and distribution of genetic diversity.