Open-Source EHR Systems for Ambulatory Care: a Market Assessment | 3 Software Architectures
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Management of Large Sets of Image Data Capture, Databases, Image Processing, Storage, Visualization Karol Kozak
Management of large sets of image data Capture, Databases, Image Processing, Storage, Visualization Karol Kozak Download free books at Karol Kozak Management of large sets of image data Capture, Databases, Image Processing, Storage, Visualization Download free eBooks at bookboon.com 2 Management of large sets of image data: Capture, Databases, Image Processing, Storage, Visualization 1st edition © 2014 Karol Kozak & bookboon.com ISBN 978-87-403-0726-9 Download free eBooks at bookboon.com 3 Management of large sets of image data Contents Contents 1 Digital image 6 2 History of digital imaging 10 3 Amount of produced images – is it danger? 18 4 Digital image and privacy 20 5 Digital cameras 27 5.1 Methods of image capture 31 6 Image formats 33 7 Image Metadata – data about data 39 8 Interactive visualization (IV) 44 9 Basic of image processing 49 Download free eBooks at bookboon.com 4 Click on the ad to read more Management of large sets of image data Contents 10 Image Processing software 62 11 Image management and image databases 79 12 Operating system (os) and images 97 13 Graphics processing unit (GPU) 100 14 Storage and archive 101 15 Images in different disciplines 109 15.1 Microscopy 109 360° 15.2 Medical imaging 114 15.3 Astronomical images 117 15.4 Industrial imaging 360° 118 thinking. 16 Selection of best digital images 120 References: thinking. 124 360° thinking . 360° thinking. Discover the truth at www.deloitte.ca/careers Discover the truth at www.deloitte.ca/careers © Deloitte & Touche LLP and affiliated entities. Discover the truth at www.deloitte.ca/careers © Deloitte & Touche LLP and affiliated entities. -
Examples of the Electronic Health Record (EHR)
Examples of the Electronic Health Record (EHR) What is Biomedical & Health Informatics? William Hersh Copyright 2020 Oregon Health & Science University Examples of the EHR • Using the Veterans Health Information Systems and Technology Architecture (VistA) • Why VistA? – State-of-the-art EHR that has transformed healthcare in the Veteran’s Health Administration (VHA) (Perlin, 2006; Byrne, 2010) – Not that pretty, but has all of the modern features of the EHR, e.g., clinical decision support (CDS), computerized provider order entry (CPOE), etc. – Distributed under open-source model, unlike most other vendors who do not even allow screen shots to be shown outside their customers’ institutions • Fascinating story (Allen, 2017), but VistA now being phased out in favor of Cerner EHR adopted by Department of Defense (VA, 2017) – https://www.ehrm.va.gov/ WhatIs5 2 1 Some details about VistA • Server written in M (formerly called MUMPS), accessed via command-line interface – Runs in commercial Intersystems Cache (on many platforms) or open-source GT.M (Linux only) • Client (called CPRS) written in Delphi and providers graphical user interface – Only runs on Windows (just about all versions) WhatIs5 3 Logging on to CPRS, the front end to VistA WhatIs5 4 2 Choosing a patient WhatIs5 5 Cover sheet – overview WhatIs5 6 3 Drilling down to details of a problem WhatIs5 7 Details of an allergy WhatIs5 8 4 Viewing vital signs over time WhatIs5 9 More details on problems WhatIs5 10 5 List of active orders WhatIs5 11 Viewing the patient’s notes WhatIs5 12 -
Free and Open Source Software for Electronic Health Information
Washington University Journal of Law & Policy Volume 30 Open Source and Proprietary Models of Innovation 2009 Slouching Toward Open Innovation: Free and Open Source Software for Electronic Health Information Greg R. Vetter University of Houston Law Center Follow this and additional works at: https://openscholarship.wustl.edu/law_journal_law_policy Part of the Computer Law Commons, and the Intellectual Property Law Commons Recommended Citation Greg R. Vetter, Slouching Toward Open Innovation: Free and Open Source Software for Electronic Health Information, 30 WASH. U. J. L. & POL’Y 179 (2009), https://openscholarship.wustl.edu/law_journal_law_policy/vol30/iss1/8 This Essay is brought to you for free and open access by the Law School at Washington University Open Scholarship. It has been accepted for inclusion in Washington University Journal of Law & Policy by an authorized administrator of Washington University Open Scholarship. For more information, please contact [email protected]. Slouching Toward Open Innovation: Free and Open Source Software for Electronic Health Information Greg R. Vetter INTRODUCTION Gartner, one of the most respected market research firms for information technology, recently called open source software the ―biggest disruptor the software industry has ever seen and postulated it will eventually result in cheaper software and new business models.‖1 The degree to which this prediction materializes depends on many influences, one of which is the subject of this Article. I argue that some software markets are more favorable for open source approaches than others. Using a case study of one particular software market, this Article develops a tentative framework of factors characterizing markets likely to disfavor contemporary approaches in free and open source software (―FOSS‖).2 Associate Professor of Law, University of Houston Law Center; Co-Director, Institute for Intellectual Property and Information Law; biography available at: http://www.law.uh.edu/ faculty/gvetter (last visited Mar. -
A Cloud Based Patient-Centered Ehealth Record
International Journal on Advances in Life Sciences, vol 7 no 1 & 2, year 2015, http://www.iariajournals.org/life_sciences/ 30 A Cloud Based Patient-Centered eHealth Record Konstantinos Koumaditis, Leonidas Katelaris, and Marinos Themistocleous Department of Digital Systems University of Piraeus Piraeus, Greece e-mail: (konkoum,lkatelaris,mthemist)@unipi.gr Abstract - This research focuses on the Patient-Centered integrated view of citizens health status. The latter is reflected e-Health (PCEH) concept by introducing its importance in EHRs and Personal Health Records (PHRs), which are and demonstrating a multidisciplinary project that being enriched and exploited by different actors and combines advanced technologies. The project links stakeholders (i.e., health and care professionals, citizens, several aspects of PCEH functionality, such as: (a) nutrition experts, hospitals, etc.) in the health ecosystem. homecare telemedicine technologies, (b) e-prescribing, e- Three general PHR models have been proposed [7]: a) the referral, e-learning and (c) state-of-the-art technologies stand-alone model, b) Electronic Health Record (EHR) like cloud computing and Service Oriented Architecture system, and c) the integrated one, which is an interoperable (SOA), will lead to an innovative integrated e-health system providing linkage with a variety of patient platform that delivers many benefits to the society, the information sources, such as EHRs, home diagnostics, economy, the industry and the research community. This insurance claims etc. The main types of health information paper provides insights of the PCEH concept and the supported by PHRs are problem lists, procedures, major current stages of the project. In doing so, we aim to illnesses, provider lists, allergy data, home-monitored data, increase the awareness of this significant work and family history, social history and lifestyle, immunizations, disseminate the knowledge gained so far through our medications and laboratory tests [8, 9]. -
Debian Med Integrated Software Environment for All Medical Applications
Debian Med Integrated software environment for all medical applications Andreas Tille 27. February 2013 When people hear for the first time the term ‘Debian Med’ there are usually two kinds of misconceptions. Let us dispel these in advance, so as to clarify subsequent discussion of the project. People familiar with Debian as a large distribution of Free Software usually imag- ine Debian Med to be some kind of customised derivative of Debian tailored for use in a medical environment. Astonishingly, the idea that such customisation can be done entirely within Debian itself is not well known and the technical term Debian Pure Blend seems to be sufficiently unknown outside of the Debian milieu that many people fail to appreciate the concept correctly. There are no separate repositories like Personal Package Archives (PPA) as introduced by Ubuntu for additional software not belong- ing to the official distribution or something like that – a Debian Pure Blend (as the term ’pure’ implies) is Debian itself and if you have received Debian you have full De- bian Med at your disposal. There are other Blends inside Debian like Debian Science, Debian Edu, Debian GIS and others. People working in the health care professions sometimes acquire another miscon- ception about Debian Med, namely that Debian Med is some kind of software primarily dedicated to managing a doctor’s practice. Sometimes people even assume that people assume the Debian Med team actually develops this software. However, the truth about the Debian Med team is that we are a group of Debian developers hard at work incor- porating existing medical software right into the Debian distribution. -
Linux: Come E Perchх
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PDF File, 212 KB
Multimedia Appendix 2. List of OS Projects Contacted for Survey Project Name Web Page 3D Slicer http://www.slicer.org/ Apollo http://www.fruitfly.org/annot/apollo/ Biobuilder http://www.biomedcentral.com/1471-2105/5/43 Bioconductor http://www.bioconductor.org Biojava http://www.biojava.org/ Biomail Scientific References Automation http://biomail.sourceforge.net/biomail/index.html Bioperl http://bioperl.org/ Biophp http://biophp.org Biopython http://www.biopython.org/ Bioquery http://www.bioquery.org/ Biowarehouse http://bioinformatics.ai.sri.com/biowarehouse/ Cd-Hit Sequence Clustering Software http://bioinformatics.org/cd-hit/ Chemistry Development Kit http://almost.cubic.uni-koeln.de/cdk/ Coasim http://www.daimi.au.dk/~mailund/CoaSim/ Cytoscape http://www.cytoscape.org Das http://biodas.org/ E-Cell System http://sourceforge.net/projects/ecell/ Emboss http://emboss.sourceforge.net/ http://www.ensembl.org/info/software/versions.htm Ensemble l Eviewbox Dicom Java Project http://sourceforge.net/projects/eviewbox/ Freemed Project http://bioinformatics.org/project/?group_id=298 Ghemical http://www.bioinformatics.org/ghemical/ Gnumed http://www.gnumed.org Medical Dataserver http://www.mii.ucla.edu/dataserver Medical Image Analysis http://sourceforge.net/projects/mia Moby http://biomoby.open-bio.org/ Olduvai http://sourceforge.net/projects/olduvai/ Openclinica http://www.openclinica.org Openemed http://openemed.org/ Openemr http://www.oemr.org/ Oscarmcmaster http://sourceforge.net/projects/oscarmcmaster/ Probemaker http://probemaker.sourceforge.net/ -
Comparison of Open-Source Electronic Health Record Systems Based on Functional and User Performance Criteria
Original Article Healthc Inform Res. 2019 April;25(2):89-98. https://doi.org/10.4258/hir.2019.25.2.89 pISSN 2093-3681 • eISSN 2093-369X Comparison of Open-Source Electronic Health Record Systems Based on Functional and User Performance Criteria Saptarshi Purkayastha1, Roshini Allam1, Pallavi Maity1, Judy W. Gichoya2 1Department of BioHealth Informatics, Indiana University–Purdue University Indianapolis, Indianapolis, IN, USA 2Dotter Institute, Oregon Health and Science University, Portland, OR, USA Objectives: Open-source Electronic Health Record (EHR) systems have gained importance. The main aim of our research is to guide organizational choice by comparing the features, functionality, and user-facing system performance of the five most popular open-source EHR systems. Methods: We performed qualitative content analysis with a directed approach on recently published literature (2012–2017) to develop an integrated set of criteria to compare the EHR systems. The functional criteria are an integration of the literature, meaningful use criteria, and the Institute of Medicine’s functional requirements of EHR, whereas the user-facing system performance is based on the time required to perform basic tasks within the EHR system. Results: Based on the Alexa web ranking and Google Trends, the five most popular EHR systems at the time of our study were OSHERA VistA, GNU Health, the Open Medical Record System (OpenMRS), Open Electronic Medical Record (OpenEMR), and OpenEHR. We also found the trends in popularity of the EHR systems and the locations where they were more popular than others. OpenEMR met all the 32 functional criteria, OSHERA VistA met 28, OpenMRS met 12 fully and 11 partially, OpenEHR-based EHR met 10 fully and 3 partially, and GNU Health met the least with only 10 criteria fully and 2 partially. -
Step-By-Step Install Guide OSCAR Mcmaster CMS on Linux Ubuntu 10.04 LTS (Lucid Lynx)
Global Open Versity eHealth Labs Install Guide OSCAR McMaster CMS on Linux Ubuntu 10.04 LTS v1.5 Global Open Versity e-Health Management Systems Hands-on Labs Training Manual Step-by-Step Install Guide OSCAR McMaster CMS on Linux Ubuntu 10.04 LTS (Lucid Lynx) Kefa Rabah Global Open Versity, Vancouver Canada [email protected] www.globalopenversity.org Table of Contents Page No. STEP-BY-STEP INSTALL GUIDE OSCAR MCMASTER CMS ON LINUX UBUNTU 10.04 LTS 3 1.0 Introduction 3 Part 1: Install & Configure Linux Ubuntu 10.04 LTS Desktop 4 Step 1: Getting Started & Hardware Pre-requisites 4 Step 2: Install Linux Ubuntu 10.04 LTS 4 Step 3: Update Ubuntu 10.04 Operating Systems 4 Part 2: Installing OSCAR McMaster CMS on Linux Ubuntu 8.04 LTS Server 5 Step 1: Preamble 5 Part 3: Installing the Infrastructure Packages 6 Step 1: Install OpenSSH Package 6 Step 2: Install Sun-Java6-JDK Package 7 Step 3: Install Ant Package 8 Step 4: Install MySQL Database Server Package 8 Step 5: Install Apache Tomcat 6 Package 9 Step 6: Install Pretty Good Privacy (PGP) Package 9 Step 7: Install CVS 10 Step 8: Install PostgreSQL database server 10 Step 9: Install UNZIP Package 10 Step 10: Install Network Time Protocol (NTP) Service 11 Step 11: Reboot the server 11 Step 12: Configuring the Base Packages 11 Step 13: Configuring Tomcat6 12 Step 14: Secure Apache Tomcat6 using SSL 13 Part 5: Install OSCAR CMS Server 15 Step 1: Download & Install OSCAR 15 Step 2: Create OSCAR Database on MySQL 16 Part 6: Enabling New eCharts 18 Step 1: Enable eChart 18 Part 7: Drugref2/3 -
Advances in Information Technology 0.Pdf
ADVANCES IN INFORMATION TECHNOLOGY AND COMMUNICATION IN HEALTH Studies in Health Technology and Informatics This book series was started in 1990 to promote research conducted under the auspices of the EC programmes’ Advanced Informatics in Medicine (AIM) and Biomedical and Health Research (BHR) bioengineering branch. A driving aspect of international health informatics is that telecommunication technology, rehabilitative technology, intelligent home technology and many other components are moving together and form one integrated world of information and communication media. The complete series has been accepted in Medline. Volumes from 2005 onwards are available online. Series Editors: Dr. O. Bodenreider, Dr. J.P. Christensen, Prof. G. de Moor, Prof. A. Famili, Dr. U. Fors, Prof. A. Hasman, Prof. E.J.S. Hovenga, Prof. L. Hunter, Dr. I. Iakovidis, Dr. Z. Kolitsi, Mr. O. Le Dour, Dr. A. Lymberis, Prof. J. Mantas, Prof. M.A. Musen, Prof. P.F. Niederer, Prof. A. Pedotti, Prof. O. Rienhoff, Prof. F.H. Roger France, Dr. N. Rossing, Prof. N. Saranummi, Dr. E.R. Siegel and Dr. P. Wilson Volume 143 Recently published in this series Vol. 142. J.D. Westwood, S.W. Westwood, R.S. Haluck, H.M. Hoffman, G.T. Mogel, R. Phillips, R.A. Robb and K.G. Vosburgh (Eds.), Medicine Meets Virtual Reality 17 – NextMed: Design for/the Well Being Vol. 141. E. De Clercq et al. (Eds.), Collaborative Patient Centred eHealth – Proceedings of the HIT@HealthCare 2008 joint event: 25th MIC Congress, 3rd International Congress Sixi, Special ISV-NVKVV Event, 8th Belgian eHealth Symposium Vol. 140. P.H. Dangerfield (Ed.), Research into Spinal Deformities 6 Vol. -
Open Source Et Gestion De L'information Médicale : Aperçu Des Projets Existants
Open source et gestion de l'information médicale : aperçu des projets existants Ateliers CISP Club 2011 – Alexandre BRULET Open Source : bref historique... 1969 : UNIX (Bell Labs°) 1975 : distribué à des universités pour « fins éducatives » avec les codes sources... 1977 : projet BSD 1984 : projet GNU (R. Stallman) (sources partagées) 1985 : Free Software Fondation (cadre légal – licence GPL) 1989 : licence BSD modifiée (open source) 1991 : noyau GNU/Linux ? OS dérivés (NetBSD, FreeBSD, SunOS ...) 1993 : Slackware 1993 : Debian 1994 : Red Hat > 50 OS dérivés > 100 OS dérivés 1998 : MPL (ex : SUSE) > 50 OS dérivés (Knopix, Ubuntu...) (Mandriva, Fedora ...) 1999 : licence Apache UNESCO 2004 : logiciels libres patrimoine de l'humanité (…) > 35 licences libres recensées sur wikipédia (PHP, Cecil, MIT, CPL, W3C, etc.) Open source : un fonctionnement communautaire ● La « pyramide » Linux : développeurs / 'maintainers' / chefs de projet sys USB net (...) L. Torvalds / A. Morton ● Système de «patchs» : publics, signés, discutés, soumis, (approuvés) ● Versions stables régulières et archivées (mirroirs) ● Système de «paquets» permettant la cohérence des OS ● Mode de fonctionnement repris par la plupart des distributions basées sur Linux ainsi que leurs « filles » : Debian → Ubuntu, Slackware → Zenwalk, RedHat → Fedora, etc. ● Idem pour les logiciels (xfce/gnome/kde, OOo, Gimp, Firefox, etc.) Le monde open source : un immense agrégat de communautés... OS OS OS Projets GNU OS OS OS Noyau OS OS OS Noyau OS OS Projets BSD Programme open source Programme propriétaire Système OS d'exploitation Quid des logiciels médicaux ? Petit tour du monde de l'open source médical à partir d'une liste proposée par Wikipédia. 1. Logiciels médicaux francophones : MedinTux ● Petite communauté depuis 2005 (marseille), licence CeCiLL ● DMI cabinet / hôpital - objectif = ergonomie ● Programmes serveurs et clients, consultation web possible. -
LIFE Packages
LIFE packages Index Office automation Desktop Internet Server Web developpement Tele centers Emulation Health centers Graphics High Schools Utilities Teachers Multimedia Tertiary schools Programming Database Games Documentation Internet - Firefox - Browser - Epiphany - Nautilus - Ftp client - gFTP - Evolution - Mail client - Thunderbird - Internet messaging - Gaim - Gaim - IRC - XChat - Gaim - VoIP - Skype - Videomeeting - Gnome meeting - GnomeBittorent - P2P - aMule - Firefox - Download manager - d4x - Telnet - Telnet Web developpement - Quanta - Bluefish - HTML editor - Nvu - Any text editor - HTML galerie - Album - Web server - XAMPP - Collaborative publishing system - Spip Desktop - Gnome - Desktop - Kde - Xfce Graphics - Advanced image editor - The Gimp - KolourPaint - Simple image editor - gPaint - TuxPaint - CinePaint - Video editor - Kino - OpenOffice Draw - Vector vraphics editor - Inkscape - Dia - Diagram editor - Kivio - Electrical CAD - Electric - 3D modeller/render - Blender - CAD system - QCad Utilities - Calculator - gCalcTool - gEdit - gxEdit - Text editor - eMacs21 - Leafpad - Application finder - Xfce4-appfinder - Desktop search tool - Beagle - File explorer - Nautilus -Archive manager - File-Roller - Nautilus CD Burner - CD burner - K3B - GnomeBaker - Synaptic - System updates - apt-get - IPtables - Firewall - FireStarter - BackupPC - Backup - Amanda - gnome-terminal - Terminal - xTerm - xTerminal - Scanner - Xsane - Partition editor - gParted - Making image of disks - Partitimage - Mirroring over network - UDP Cast