Eel River Recovery Project
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Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Geomorphometric Delineation of Floodplains and Terraces From
Earth Surf. Dynam., 5, 369–385, 2017 https://doi.org/10.5194/esurf-5-369-2017 © Author(s) 2017. This work is distributed under the Creative Commons Attribution 3.0 License. Geomorphometric delineation of floodplains and terraces from objectively defined topographic thresholds Fiona J. Clubb1, Simon M. Mudd1, David T. Milodowski2, Declan A. Valters3, Louise J. Slater4, Martin D. Hurst5, and Ajay B. Limaye6 1School of GeoSciences, University of Edinburgh, Drummond Street, Edinburgh, EH8 9XP, UK 2School of GeoSciences, University of Edinburgh, Crew Building, King’s Buildings, Edinburgh, EH9 3JN, UK 3School of Earth, Atmospheric, and Environmental Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK 4Department of Geography, Loughborough University, Loughborough, LE11 3TU, UK 5School of Geographical and Earth Sciences, East Quadrangle, University of Glasgow, Glasgow, G12 8QQ, UK 6Department of Earth Sciences and St. Anthony Falls Laboratory, University of Minnesota, Minneapolis, Minnesota, USA Correspondence to: Fiona J. Clubb ([email protected]) Received: 31 March 2017 – Discussion started: 12 April 2017 Revised: 26 May 2017 – Accepted: 9 June 2017 – Published: 10 July 2017 Abstract. Floodplain and terrace features can provide information about current and past fluvial processes, including channel response to varying discharge and sediment flux, sediment storage, and the climatic or tectonic history of a catchment. Previous methods of identifying floodplain and terraces from digital elevation models (DEMs) tend to be semi-automated, requiring the input of independent datasets or manual editing by the user. In this study we present a new method of identifying floodplain and terrace features based on two thresholds: local gradient, and elevation compared to the nearest channel. -
Molecular Systematics of Western North American Cyprinids (Cypriniformes: Cyprinidae)
Zootaxa 3586: 281–303 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:0EFA9728-D4BB-467E-A0E0-0DA89E7E30AD Molecular systematics of western North American cyprinids (Cypriniformes: Cyprinidae) SUSANA SCHÖNHUTH 1, DENNIS K. SHIOZAWA 2, THOMAS E. DOWLING 3 & RICHARD L. MAYDEN 1 1 Department of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO 63103, USA. E-mail S.S: [email protected] ; E-mail RLM: [email protected] 2 Department of Biology and Curator of Fishes, Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602, USA. E-mail: [email protected] 3 School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA. E-mail: [email protected] Abstract The phylogenetic or evolutionary relationships of species of Cypriniformes, as well as their classification, is in a era of flux. For the first time ever, the Order, and constituent Families are being examined for relationships within a phylogenetic context. Relevant findings as to sister-group relationships are largely being inferred from analyses of both mitochondrial and nuclear DNA sequences. Like the vast majority of Cypriniformes, due to an overall lack of any phylogenetic investigation of these fishes since Hennig’s transformation of the discipline, changes in hypotheses of relationships and a natural classification of the species should not be of surprise to anyone. Basically, for most taxa no properly supported phylogenetic hypothesis has ever been done; and this includes relationships with reasonable taxon and character sampling of even families and subfamilies. -
Volume III, Chapter 5 Northern Pikeminnow
Volume III, Chapter 5 Northern Pikeminnow TABLE OF CONTENTS 5.0 Northern Pikeminnow (Ptychocheilus oregonensis)................................................... 5-1 5.1 Distribution ................................................................................................................. 5-1 5.2 Life History Characteristics ........................................................................................ 5-2 5.2.1 Size & Mortality................................................................................................... 5-2 5.2.2 Population Dynamics & Demographic Risk........................................................ 5-3 5.3 Status & Abundance Trends........................................................................................ 5-4 5.3.1 Abundance............................................................................................................ 5-4 5.3.2 Productivity.......................................................................................................... 5-5 5.3.3 Harvest................................................................................................................. 5-6 5.4 Factors Affecting Population Status............................................................................ 5-7 5.4.1 Northern Pikeminnow Management Program History........................................ 5-7 5.4.2 NPMP Review .................................................................................................... 5-11 5.4.3 Harvest.............................................................................................................. -
South Fork Eel River & Tributaries PROPOSED WILD & SCENIC
Management Agency: South Fork Eel River & Tributaries Bureau of Land Management ~ BLM Arcata Field Office PROPOSED WILD & SCENIC RIVERS University of California ~ Angelo Coast Range Reserve These proposed Wild and Scenic Rivers support threatened Location: Mendocino County and endangered populations of salmon and steelhead and CA 2nd Congressional District rare plants. They also provide outstanding research Watershed: opportunities of nearly pristine undeveloped watersheds. South Fork Eel River Wild & Scenic River Miles: South Fork Eel River – 12.3 miles South Fork Eel River—12.3 The South Fork Eel River supports the largest concentration Elder Creek—7 of naturally reproducing anadromous fish in the region. East Branch South Fork Eel River—23.1 Cedar Creek—9.6 Federal officials recently identified the river as essential for the recovery of threatened salmon and steelhead. The Outstanding Values: upper portion of this segment is located on the Angelo Anadromous fisheries, ecological, Biosphere Reserve, hydrological, wildlife, recreation Preserve managed for wild lands research by the University of California. Angelo Reserve access roads are open to For More Information: public hiking. The lower portion flows through the existing Steve Evans—CalWild [email protected] South Fork Wilderness managed by the BLM. The river (916) 708-3155 offers class IV-V whitewater boating opportunities. The river would be administered through a cooperative management agreement between the BLM and the State of California. Elder Creek – 7 miles This nearly pristine stream is a National Natural Landmark, Hydrologic Benchmark, and a UN-recognized Biosphere Reserve. A tributary of the South Fork Eel River, the creek is an important contributor to the South Fork’s anadromous Front Photo: South Fork Eel River fishery. -
Final Rogue Fall Chinook Salmon Conservation Plan
CONSERVATION PLAN FOR FALL CHINOOK SALMON IN THE ROGUE SPECIES MANAGEMENT UNIT Adopted by the Oregon Fish and Wildlife Commission January 11, 2013 Oregon Department of Fish and Wildlife 3406 Cherry Avenue NE Salem, OR 97303 Rogue Fall Chinook Salmon Conservation Plan - January 11, 2013 Table of Contents Page FOREWORD .................................................................................................................................. 4 ACKNOWLEDGMENTS ............................................................................................................... 5 INTRODUCTION ........................................................................................................................... 6 RELATIONSHIP TO OTHER NATIVE FISH CONSERVATION PLANS ................................. 7 CONSTRAINTS ............................................................................................................................. 7 SPECIES MANAGEMENT UNIT AND CONSTITUENT POPULATIONS ............................... 7 BACKGROUND ........................................................................................................................... 10 Historical Context ......................................................................................................................... 10 General Aspects of Life History .................................................................................................... 14 General Aspects of the Fisheries .................................................................................................. -
Species Status Assessment Report for the Colorado Pikeminnow Ptychocheilus Lucius
U.S. Fish and Wildlife Service FINAL March 2020 Species Status Assessment Report for the Colorado pikeminnow Ptychocheilus lucius U.S. Fish and Wildlife Service Department of the Interior Upper Colorado Basin Region 7 Denver, CO FINAL Species Status Assessment March 2020 PREFACE This Species Status Assessment provides an integrated, scientifically sound assessment of the biological status of the endangered Colorado pikeminnow Ptychocheilus lucius. This document was prepared by the U.S. Fish and Wildlife Service (USFWS), with assistance from state, federal, and private researchers currently working with Colorado pikeminnow. The writing team would like to acknowledge the substantial contribution of time and effort by those that participated in the Science Team. Writing Team Tildon Jones (Coordinator, Upper Colorado River Recovery Program) Eliza Gilbert (Program Biologist, San Juan River Basin Recovery Implementation Program) Tom Chart (Director, Upper Colorado River Recovery Program) U.S. Fish and Wildlife Service Species Status Assessment Advisory Group Craig Hansen (U.S. Fish and Wildlife Service, Region 6) Reviewers and Collaborators Upper Colorado River Recovery Program Directors Office: Donald Anderson, Katie Busch, Melanie Fischer, Kevin McAbee, Cheyenne Owens, Julie Stahli Science Team: Kevin Bestgen, Jim Brooks, Darek Elverud, Eliza Gilbert, Steven Platania, Dale Ryden, Tom Chart Peer Reviewers: Keith Gido, Wayne Hubert Upper Colorado River Recovery Program Biology Committee Members: Paul Badame, Pete Cavalli, Harry Crockett, Bill -
Salmonid Habitat and Population Capacity Estimates for Steelhead Trout and Chinook Salmon Upstream of Scott Dam in the Eel River, California
Emily J. Cooper1, Alison P. O’Dowd, and James J. Graham, Humboldt State University, 1 Harpst Street, Arcata, California 95521 Darren W. Mierau, California Trout, 615 11th Street, Arcata, California 95521 William J. Trush, Humboldt State University, 1 Harpst Street, Arcata, California 95521 and Ross Taylor, Ross Taylor and Associates, 1660 Central Avenue # B, McKinleyville, California 95519 Salmonid Habitat and Population Capacity Estimates for Steelhead Trout and Chinook Salmon Upstream of Scott Dam in the Eel River, California Abstract Estimating salmonid habitat capacity upstream of a barrier can inform priorities for fisheries conservation. Scott Dam in California’s Eel River is an impassable barrier for anadromous salmonids. With Federal dam relicensing underway, we demonstrated recolonization potential for upper Eel River salmonid populations by estimating the potential distribution (stream-km) and habitat capacity (numbers of parr and adults) for winter steelhead trout (Oncorhynchus mykiss) and fall Chinook salmon (O. tshawytscha) upstream of Scott Dam. Removal of Scott Dam would support salmonid recovery by increasing salmonid habitat stream-kms from 2 to 465 stream-km for steelhead trout and 920 to 1,071 stream-km for Chinook salmon in the upper mainstem Eel River population boundaries, whose downstream extents begin near Scott Dam and the confluence of South Fork Eel River, respectively. Upstream of Scott Dam, estimated steelhead trout habitat included up to 463 stream-kms for spawning and 291 stream-kms for summer rearing; estimated Chinook salmon habitat included up to 151 stream-kms for both spawning and rearing. The number of returning adult estimates based on historical count data (1938 to 1975) from the South Fork Eel River produced wide ranges for steelhead trout (3,241 to 26,391) and Chinook salmon (1,057 to 10,117). -
A New Chub (Actinopterygii, Cypriniformes, Cyprinidae) from the Middle Miocene (Early Clarendonian) Aldrich Station Formation, Lyon County, Nevada
Paludicola 7(4):137-157 May 2010 © by the Rochester Institute of Vertebrate Paleontology A NEW CHUB (ACTINOPTERYGII, CYPRINIFORMES, CYPRINIDAE) FROM THE MIDDLE MIOCENE (EARLY CLARENDONIAN) ALDRICH STATION FORMATION, LYON COUNTY, NEVADA Thomas S. Kelly Research Associate, Vertebrate Paleontology Section, Natural History Museum of Los Angeles County 900 Exposition Boulevard, Los Angeles, California 90007 ABSTRACT A new chub, Lavinia lugaskii, is described from the middle Miocene (early Clarendonian) Aldrich Station Formation of Lyon County, Nevada. Lavinia lugaskii represents a basal member of the Lavinia-Hesperoleucus lineage, indicating that this lineage diverged from a common ancestor with Mylopharodon before 12.5 – 12.0 million years before present. This is the oldest recognized species of Lavinia and the first new chub species to be documented from the Miocene of Nevada in over 30 years. INTRODUCTION METHODS A sample of fish fossils is now known from Measurements of the skeletons and individual localities that occur in an outlier of the Aldrich Station bones were made to the nearest 0.1 mm with a vernier Formation, exposed just west of Mickey Canyon on the caliper. Measurements of the pharyngeal teeth were northwest flank of the Pine Groove Hills, Lyon made with an optical micrometer to the nearest 0.01 County, Nevada. All of the fish remains were mm. Estimated standard lengths for partial skeletons recovered from a single stratigraphic level represented were extrapolated using the mean ratios of the standard by a thin (~0.06 m) shale bed. This level can be traced length to landmark measurements (e.g., ratios of the SL laterally for about 0.5 km and yielded fossil fish to head length, pectoral fin origin to pelvic fin origin remains at several points along its exposure. -
1 CWU Comparative Osteology Collection, List of Specimens
CWU Comparative Osteology Collection, List of Specimens List updated November 2019 0-CWU-Collection-List.docx Specimens collected primarily from North American mid-continent and coastal Alaska for zooarchaeological research and teaching purposes. Curated at the Zooarchaeology Laboratory, Department of Anthropology, Central Washington University, under the direction of Dr. Pat Lubinski, [email protected]. Facility is located in Dean Hall Room 222 at CWU’s campus in Ellensburg, Washington. Numbers on right margin provide a count of complete or near-complete specimens in the collection. Specimens on loan from other institutions are not listed. There may also be a listing of mount (commercially mounted articulated skeletons), part (partial skeletons), skull (skulls), or * (in freezer but not yet processed). Vertebrate specimens in taxonomic order, then invertebrates. Taxonomy follows the Integrated Taxonomic Information System online (www.itis.gov) as of June 2016 unless otherwise noted. VERTEBRATES: Phylum Chordata, Class Petromyzontida (lampreys) Order Petromyzontiformes Family Petromyzontidae: Pacific lamprey ............................................................. Entosphenus tridentatus.................................... 1 Phylum Chordata, Class Chondrichthyes (cartilaginous fishes) unidentified shark teeth ........................................................ ........................................................................... 3 Order Squaliformes Family Squalidae Spiny dogfish ........................................................ -
California Wetlands
VOL. 46, NO.2 FREMONTIA JOURNAL OF THE CALIFORNIA NATIVE PLANT SOCIETY California Wetlands 1 California Native Plant Society CNPS, 2707 K Street, Suite 1; Sacramento, CA 95816-5130 Phone: (916) 447-2677 • Fax: (916) 447-2727 FREMONTIA www.cnps.org • [email protected] VOL. 46, NO. 2, November 2018 Memberships Copyright © 2018 Members receive many benefits, including a subscription toFremontia California Native Plant Society and the CNPS Bulletin. Look for more on inside back cover. ISSN 0092-1793 (print) Mariposa Lily.............................$1,500 Family..............................................$75 ISSN 2572-6870 (online) Benefactor....................................$600 International or library...................$75 Patron............................................$300 Individual................................$45 Gordon Leppig, Editor Plant lover.....................................$100 Student/retired..........................$25 Michael Kauffmann, Editor & Designer Corporate/Organizational 10+ Employees.........................$2,500 4-6 Employees..............................$500 7-10 Employees.........................$1,000 1-3 Employees............................$150 Staff & Contractors Dan Gluesenkamp: Executive Director Elizabeth Kubey: Outreach Coordinator Our mission is to conserve California’s Alfredo Arredondo: Legislative Analyst Sydney Magner: Asst. Vegetation Ecologist native plants and their natural habitats, Christopher Brown: Membership & Sales David Magney: Rare Plant Program Manager and increase understanding, -
KNICKPOINTS in TRIBUTARIES of the SOUTH FORK EEL RIVER, NORTHERN CALIFORNIA by Melissa Foster a Thesis Presented to the Faculty
KNICKPOINTS IN TRIBUTARIES OF THE SOUTH FORK EEL RIVER, NORTHERN CALIFORNIA by Melissa Foster A Thesis Presented to The Faculty of Humboldt State University In Partial Fulfillment Of the Requirements for the Degree Master of Science In Environmental Systems: Geology May, 2010 KNICKPOINTS IN TRIBUTARIES OF THE SOUTH FORK EEL RIVER, NORTHERN CALIFORNIA By Melissa Foster Approved by the Master’s Thesis Committee: Dr. Harvey M. Kelsey, Major Professor Date Dr. Benjamin T. Crosby, Committee Member Date Dr. William E. Weaver, Committee Member Date Dr. Christopher J. Dugaw, Graduate Coordinator Date Jená Burges, Vice Provost Date ABSTRACT KNICKPOINTS IN TRIBUTARIES OF THE SOUTH FORK EEL RIVER, NORTHERN CALIFORNIA Melissa Foster Multiple knickpoints are present in two tributary basins of the South Fork Eel River. These tributaries are downstream from a major knickpoint on the South Fork Eel River, which may be a transient knickpoint propagating base-level fall throughout the basin. Knickpoints are identified from longitudinal profiles extracted from LiDAR- derived DEMs. Knickpoints and knickzones, knickzones being the immediate downstream reach of higher gradient, are present throughout the two basins. Many of the knickpoints display correlative elevations between the two basins. Knickpoints are most common on first-order streams, and knickpoint frequency decreases with increasing stream order. Major knickzones were found throughout the basins, but the largest knickzone reaches were found closest to the basin outlets. Although only the lowest major knickpoints on each tributary likely correlate with the major knickpoint on the South Fork, it does appear that knickpoints in these tributary basins are the result of multiple instances of base-level lowering on the South Fork Eel River.