Table a – Subclass Hexacorallia
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Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia Viridis and Transcriptome Wide Identification of Cnidarian Homologues
G C A T T A C G G C A T genes Article Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues Aldo Nicosia 1,* ID , Carmelo Bennici 1, Girolama Biondo 1, Salvatore Costa 2 ID , Marilena Di Natale 1, Tiziana Masullo 1, Calogera Monastero 1, Maria Antonietta Ragusa 2, Marcello Tagliavia 1 and Angela Cuttitta 1,* 1 National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR), Laboratory of Molecular Ecology and Biotechnology, Detached Unit of Capo Granitola, Via del mare, 91021 Torretta Granitola (TP), Sicily, Italy; [email protected] (C.B.); [email protected] (G.B.); [email protected] (M.D.N.); [email protected] (T.M.); [email protected] (C.M.); [email protected] (M.T.) 2 Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale delle Scienze, Ed. 16, 90128 Palermo, Sicily, Italy; [email protected] (S.C.); [email protected] (M.A.R.) * Correspondence: [email protected] (A.N.); [email protected] (A.C.); Tel.: +39-0924-40600 (A.N. & A.C.) Received: 10 November 2017; Accepted: 5 January 2018; Published: 11 January 2018 Abstract: Gene family encoding translationally controlled tumour protein (TCTP) is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis. The release of the genome sequence of Acropora digitifera, Exaiptasia pallida, Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians. -
Reproductive Strategies of the Coral Turbinaria Reniformis in The
www.nature.com/scientificreports OPEN Reproductive strategies of the coral Turbinaria reniformis in the northern Gulf of Aqaba (Red Sea) Received: 10 October 2016 Hanna Rapuano1, Itzchak Brickner1, Tom Shlesinger1, Efrat Meroz-Fine2, Raz Tamir1,2 & Accepted: 13 January 2017 Yossi Loya1 Published: 14 February 2017 Here we describe for the first time the reproductive biology of the scleractinian coralTurbinaria reniformis studied during three years at the coral reefs of Eilat and Aqaba. We also investigated the possibility of sex change in individually tagged colonies followed over a period of 12 years. T. reniformis was found to be a stable gonochorist (no detected sex change) that reproduces by broadcast spawning 5–6 nights after the full moon of June and July. Spawning was highly synchronized between individuals in the field and in the lab. Reproduction ofT. reniformis is temporally isolated from the times at which most other corals reproduce in Eilat. Its relatively long reproductive cycle compared to other hermaphroditic corals may be due to the high reproductive effort associated with the production of eggs by gonochoristic females. Sex ratio in both the Aqaba and Eilat coral populations deviated significantly from a 1:1 ratio. The larger number of males than of females may provide a compensation for sperm limitation due to its dilution in the water column. We posit that such sex allocation would facilitate adaptation within gonochoristic species by increasing fertilization success in low density populations, constituting a phenomenon possibly regulated by chemical communication. Research on scleractinian coral reproduction is a prerequisite for the study of other life-history strategies, the ecol- ogy and persistence of populations and communities, and for the management and preservation of the reef1–3. -
The Coral Trait Database, a Curated Database of Trait Information for Coral Species from the Global Oceans
www.nature.com/scientificdata OPEN The Coral Trait Database, a curated SUBJECT CATEGORIES » Community ecology database of trait information for » Marine biology » Biodiversity coral species from the global oceans » Biogeography 1 2 3 2 4 Joshua S. Madin , Kristen D. Anderson , Magnus Heide Andreasen , Tom C.L. Bridge , , » Coral reefs 5 2 6 7 1 1 Stephen D. Cairns , Sean R. Connolly , , Emily S. Darling , Marcela Diaz , Daniel S. Falster , 8 8 2 6 9 3 Erik C. Franklin , Ruth D. Gates , Mia O. Hoogenboom , , Danwei Huang , Sally A. Keith , 1 2 2 4 10 Matthew A. Kosnik , Chao-Yang Kuo , Janice M. Lough , , Catherine E. Lovelock , 1 1 1 11 12 13 Osmar Luiz , Julieta Martinelli , Toni Mizerek , John M. Pandolfi , Xavier Pochon , , 2 8 2 14 Morgan S. Pratchett , Hollie M. Putnam , T. Edward Roberts , Michael Stat , 15 16 2 Carden C. Wallace , Elizabeth Widman & Andrew H. Baird Received: 06 October 2015 28 2016 Accepted: January Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to Published: 29 March 2016 an organism’s function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository. -
MARINE FAUNA and FLORA of BERMUDA a Systematic Guide to the Identification of Marine Organisms
MARINE FAUNA AND FLORA OF BERMUDA A Systematic Guide to the Identification of Marine Organisms Edited by WOLFGANG STERRER Bermuda Biological Station St. George's, Bermuda in cooperation with Christiane Schoepfer-Sterrer and 63 text contributors A Wiley-Interscience Publication JOHN WILEY & SONS New York Chichester Brisbane Toronto Singapore ANTHOZOA 159 sucker) on the exumbrella. Color vari many Actiniaria and Ceriantharia can able, mostly greenish gray-blue, the move if exposed to unfavorable condi greenish color due to zooxanthellae tions. Actiniaria can creep along on their embedded in the mesoglea. Polyp pedal discs at 8-10 cm/hr, pull themselves slender; strobilation of the monodisc by their tentacles, move by peristalsis type. Medusae are found, upside through loose sediment, float in currents, down and usually in large congrega and even swim by coordinated tentacular tions, on the muddy bottoms of in motion. shore bays and ponds. Both subclasses are represented in Ber W. STERRER muda. Because the orders are so diverse morphologically, they are often discussed separately. In some classifications the an Class Anthozoa (Corals, anemones) thozoan orders are grouped into 3 (not the 2 considered here) subclasses, splitting off CHARACTERISTICS: Exclusively polypoid, sol the Ceriantharia and Antipatharia into a itary or colonial eNIDARIA. Oral end ex separate subclass, the Ceriantipatharia. panded into oral disc which bears the mouth and Corallimorpharia are sometimes consid one or more rings of hollow tentacles. ered a suborder of Scleractinia. Approxi Stomodeum well developed, often with 1 or 2 mately 6,500 species of Anthozoa are siphonoglyphs. Gastrovascular cavity compart known. Of 93 species reported from Ber mentalized by radially arranged mesenteries. -
Biological Results of the Chatham Islands 1954 Expedition
ISSN 2538-1016; 29 NEW ZEALAND DEPARTMENT OF SCIENTIFIC AND INDUSTRIAL RESEARCH BULLETIN 139 (6) Biological Results of The Chatham Islands 1954 Expedition PART 6 Scleractinia BY DONALD F. SQUIRES New Zealand Oceanographic Institute Memoir No. 29 1964 This publication is the sixth part of the Department of Scientificand Industrial Research Bulletin 139, which records the Biological Results of the Chatham Islands 1954 Expedition. Parts already published are: Part 1. Crustacea, by R. K. Dell, N. S. Jones, and J. C. Yaldwyn. Part 2. Archibenthal and Littoral Echinoderms, by H. Barraclough Fell. Part 3. Polychaeta Errantia, by G. A. Knox. Part 4. Marine Mollusca, by R. K. Dell; Sipunculoidea, by S. J. Edmonds. Part 5. Porifera: Demospongiae, by Patricia R. Bergquist; Porifera: Keratosa, by Patricia R. Bergquist; Crustacea Isopoda: Bopyridae, by R. B. Pike; Crustacea Isopoda: Serolidae, by D. E. Hurley; Hydroida, by Patricia M. Ralph. Additional parts are in preparation. A "General Account" of the Expedition was published as N.Z. Department of Scientific and Industrial Research Bulletin No. 122 (1957). BIOLOGICAL RESULTS OF THE CHATHAM ISLANDS 1954 EXPEDITION PART 6-SCLERACTINIA This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ Photograph: G. A. Knox. The Sero/is bromleyana - Spatangus multispinus community on the sorting screen. Aberrant growth form of Flabellum knoxi is in the lower left(see also plate 1, figs. 4-6). The abundant tubes are those of Hya!inoecia tubicola, the large starfish is Zoroaster spinu!osus, the echinoids Parameretia multituberculata. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Habitat-Forming Deep-Sea Corals in the Northeast Pacific Ocean
Habitat-forming deep-sea corals in the Northeast Pacific Ocean Peter Etnoyer1, Lance E. Morgan2 1 Aquanautix Consulting, 3777 Griffith View Drive, Los Angeles, CA 90039, USA ([email protected]) 2 Marine Conservation Biology Institute, 4878 Warm Springs Rd., Glen Ellen, CA 95442, USA Abstract. We define habitat-forming deep-sea corals as those families of octocorals, hexacorals, and stylasterids with species that live deeper than 200 m, with a majority of species exhibiting complex branching morphology and a sufficient size to provide substrata or refugia to associated species. We present 2,649 records (name, geoposition, depth, and data quality) from eleven institutions on eight habitat- forming deep-sea coral families, including octocorals in the families Coralliidae, Isididae, Paragorgiidae and Primnoidae, hexacorals in the families Antipathidae, Oculinidae and Caryophylliidae, and stylasterids in the family Stylasteridae. The data are ranked according to record quality. We compare family range and distribution as predicted by historical records to the family extent as informed by recent collections aboard the National Oceanic of Atmospheric Administration (NOAA) Office of Ocean Exploration 2002 Gulf of Alaska Seamount Expedition (GOASEX). We present a map of one of these families, the Primnoidae. We find that these habitat-forming families are widespread throughout the Northeast Pacific, save Caryophylliidae (Lophelia sp.) and Oculinidae (Madrepora sp.), which are limited in occurrence. Most coral records fall on the continental shelves, in Alaska, or Hawaii, likely reflecting research effort. The vertical range of these families, based on large samples (N >200), is impressive. Four families have maximum-recorded depths deeper than 1500 m, and minimum depths shallower than 40 m. -
Biodiversity of the Kermadec Islands and Offshore Waters of the Kermadec Ridge: Report of a Coastal, Marine Mammal and Deep-Sea Survey (TAN1612)
Biodiversity of the Kermadec Islands and offshore waters of the Kermadec Ridge: report of a coastal, marine mammal and deep-sea survey (TAN1612) New Zealand Aquatic Environment and Biodiversity Report No. 179 Clark, M.R.; Trnski, T.; Constantine, R.; Aguirre, J.D.; Barker, J.; Betty, E.; Bowden, D.A.; Connell, A.; Duffy, C.; George, S.; Hannam, S.; Liggins, L..; Middleton, C.; Mills, S.; Pallentin, A.; Riekkola, L.; Sampey, A.; Sewell, M.; Spong, K.; Stewart, A.; Stewart, R.; Struthers, C.; van Oosterom, L. ISSN 1179-6480 (online) ISSN 1176-9440 (print) ISBN 978-1-77665-481-9 (online) ISBN 978-1-77665-482-6 (print) January 2017 Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries websites at: http://www.mpi.govt.nz/news-resources/publications.aspx http://fs.fish.govt.nz go to Document library/Research reports © Crown Copyright - Ministry for Primary Industries TABLE OF CONTENTS EXECUTIVE SUMMARY 1 1. INTRODUCTION 3 1.1 Objectives: 3 1.2 Objective 1: Benthic offshore biodiversity 3 1.3 Objective 2: Marine mammal research 4 1.4 Objective 3: Coastal biodiversity and connectivity 5 2. METHODS 5 2.1 Survey area 5 2.2 Survey design 6 Offshore Biodiversity 6 Marine mammal sampling 8 Coastal survey 8 Station recording 8 2.3 Sampling operations 8 Multibeam mapping 8 Photographic transect survey 9 Fish and Invertebrate sampling 9 Plankton sampling 11 Catch processing 11 Environmental sampling 12 Marine mammal sampling 12 Dive sampling operations 12 Outreach 13 3. -
In-Situ Observation of Deep Water Corals in the Northern Red Sea Waters of Saudi Arabia
Deep-Sea Research I 89 (2014) 35–43 Contents lists available at ScienceDirect Deep-Sea Research I journal homepage: www.elsevier.com/locate/dsri In-situ observation of deep water corals in the northern Red Sea waters of Saudi Arabia Mohammad A. Qurban a,n, P.K. Krishnakumar a, T.V. Joydas a, K.P. Manikandan a, T.T.M. Ashraf a, S.I. Quadri a, M. Wafar a, Ali Qasem b, S.D. Cairns c a Center for Environment and Water, Research Institute, King Fahd University of Petroleum and Minerals, P. B. No. 391, Dhahran 31261, Saudi Arabia b Environmental Protection Department, Saudi Aramco, Dhahran, Saudi Arabia c Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560, United States of America article info abstract Article history: Three sites offshore of the Saudi Arabia coast in the northern Red Sea were surveyed in November 2012 Received 29 October 2013 to search for deep-water coral (DWC) grounds using a Remotely Operated Vehicle. A total of 156 colonies Received in revised form were positively identified between 400 and 760 m, and were represented by seven species belonging to 30 March 2014 Scleractinia (3), Alcyonacea (3) and Antipatharia (1). The scleractinians Dasmosmilia valida Marenzeller, Accepted 5 April 2014 1907, Eguchipsammia fistula (Alcock, 1902) and Rhizotrochus typus Milne-Edwards and Haime, 1848 were Available online 13 April 2014 identified to species level, while the octocorals Acanthogorgia sp., Chironephthya sp., Pseudopterogorgia Keywords: sp., and the antipatharian Stichopathes sp., were identified to genus level. Overall, the highest abundance Cold water corals of DWC was observed at Site A1, the closest to the coast. -
Cold-Water Corals Online Appendix: Recent Azooxanthellate Scleractinia
Cold-water Corals Online Appendix Phylogenetic list of 711 valid Recent azooxanthellate scleractinian species, with their junior synonyms and depth ranges Notes Type species of the genus indicated with an asterisk, valid species names in bold-type Eleven facultatively zooxanthellate species Taxa prefaced with a single square bracket are not valid species and thus are not counted Last revised September 2008 (Stephen D. Cairns) Suborder ASTROCOENIINA FAMILY POCILLOPORIDAE Gray, 1842 Madracis Milne Edwards & Haime, 1849 *asperula Milne Edwards & Haime, 1849 (facultative, H. Zibrowius, pers. comm..; 0-311 m) pharensis cf. pharensis (Heller, 1868) (facultative; 6-333 m) =?M. cf. pharensis sensu Cairns, 1991: 6 (Galápagos, 30-343 m) =?M. cf. pharensis sensu Cairns & Zibrowius, 1997: 67 (Banda Sea, 85-421 m) asanoi Yabe & Sugiyama, 1936 (110-183 m) =M. palaoensis Yabe & Sugiyama, 1936 kauaiensis Vaughan, 1907 (44-541 m) ?=singularis Rehberg, 1892 ?=interjecta Marenzeller, 1907 var. macrocalyx Vaughan, 1907 (160-260 m) hellana Milne Edwards & Haime, 1850 (46 m) myriaster (Milne Edwards & Haime, 1849) (37-1220 m) =Stylophora mirabilis Duchassaing & Michelotti, 1860 =Axohelia schrammii Pourtalès, 1874 brueggemanni (Ridley, 1881) (51-130 m) =M. scotiae Gardiner, 1913 profunda Zibrowius, 1980 (112-327 m) [sp. A =sensu Wells, 1954: 414 (Marshall I.) =cf. asperula, sensu Cairns, 1991: 5 (Galápagos, 46-64 m) =sensu Cairns & Keller, 1993:228 (SWIO, 62-160 m) =sensu Cairns, 1994: 36 (Japan, 46-110 m) =sensu Cairns & Zibrowius, 1997: 67 (Philippines, 124-208 m) Suborder FUNGIINA Superfamily FUNGIOIDEA Dana, 1846 FAMILY FUNGIACYATHIDAE Chevalier, 1987 Fungiacyathus (F.) Sars, 1872 *fragilis Sars, 1872 (200-2200 m) (not F. fragilis Keller, 1976 (junior homonym)) =Bathyactis hawaiiensis Vaughan, 1907 paliferus (Alcock, 1902) (69-823 m) =Bathyactis kikaiensis Yabe & Eguchi, 1942 (fossil) =F. -
Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)
Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E. -
Deep‐Sea Coral Taxa in the U.S. Gulf of Mexico: Depth and Geographical Distribution
Deep‐Sea Coral Taxa in the U.S. Gulf of Mexico: Depth and Geographical Distribution by Peter J. Etnoyer1 and Stephen D. Cairns2 1. NOAA Center for Coastal Monitoring and Assessment, National Centers for Coastal Ocean Science, Charleston, SC 2. National Museum of Natural History, Smithsonian Institution, Washington, DC This annex to the U.S. Gulf of Mexico chapter in “The State of Deep‐Sea Coral Ecosystems of the United States” provides a list of deep‐sea coral taxa in the Phylum Cnidaria, Classes Anthozoa and Hydrozoa, known to occur in the waters of the Gulf of Mexico (Figure 1). Deep‐sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 m deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is adapted from species lists presented in ʺBiodiversity of the Gulf of Mexicoʺ (Felder & Camp 2009), which inventoried species found throughout the entire Gulf of Mexico including areas outside U.S. waters. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, and alphabetically within order by suborder (if applicable), family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distribution. Only those species found within the U.S. Gulf of Mexico Exclusive Economic Zone are presented here. Information from recent studies that have expanded the known range of species into the U.S. Gulf of Mexico have been included. The total number of species of deep‐sea corals documented for the U.S.