Shallow Coral Reef Habitat and Shallow Coral
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New Record of the Seagrass Species Halophila Major (Zoll.) Miquel in Vietnam: Evidence from Leaf Morphology and ITS Analysis
DOI 10.1515/bot-2012-0188 Botanica Marina 2013; 56(4): 313–321 Nguyen Xuan Vy*, Laura Holzmeyer and Jutta Papenbrock New record of the seagrass species Halophila major (Zoll.) Miquel in Vietnam: evidence from leaf morphology and ITS analysis Abstract: The seagrass Halophila major (Zoll.) Miquel (i) the number of cross veins, which ranges from 18 to 22, is reported for the first time from Vietnam. It was found and (ii) the ratio of the distance between the intramar- growing with other seagrass species nearshore, 4–6 m ginal vein and the lamina margin at the half-way point deep at Tre Island, Nha Trang Bay. Leaf morphology and along the leaf length, which is 1:20–1:25 (Kuo et al. 2006). phylogenetic analysis based on ribosomal internal tran- Recently, genetic markers, including plastid and nuclear scribed spacer sequences confirmed the identification. sequences, have been used to reveal the genetic relation- There was very little sequence differentiation among sam- ships among members of the genus Halophila. Among the ples of H. major collected in Vietnam and other countries molecular markers used, neither single sequence analysis in the Western Pacific region. A very low evolutionary of the plastid gene encoding the large subunit of ribulose- divergence among H. major populations was found. 1,5-bisphosphate-carboxylase-oxygenase (rbcL) and of the plastid maturase K (matK) nor analysis of the concat- Keywords: Halophila major; internal transcribed spacer; enated sequences of the two plastid markers has resolved new record; seagrass; Vietnam. the two closely related species H. ovalis and H. ovata (Lucas et al. -
Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia Viridis and Transcriptome Wide Identification of Cnidarian Homologues
G C A T T A C G G C A T genes Article Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues Aldo Nicosia 1,* ID , Carmelo Bennici 1, Girolama Biondo 1, Salvatore Costa 2 ID , Marilena Di Natale 1, Tiziana Masullo 1, Calogera Monastero 1, Maria Antonietta Ragusa 2, Marcello Tagliavia 1 and Angela Cuttitta 1,* 1 National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR), Laboratory of Molecular Ecology and Biotechnology, Detached Unit of Capo Granitola, Via del mare, 91021 Torretta Granitola (TP), Sicily, Italy; [email protected] (C.B.); [email protected] (G.B.); [email protected] (M.D.N.); [email protected] (T.M.); [email protected] (C.M.); [email protected] (M.T.) 2 Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale delle Scienze, Ed. 16, 90128 Palermo, Sicily, Italy; [email protected] (S.C.); [email protected] (M.A.R.) * Correspondence: [email protected] (A.N.); [email protected] (A.C.); Tel.: +39-0924-40600 (A.N. & A.C.) Received: 10 November 2017; Accepted: 5 January 2018; Published: 11 January 2018 Abstract: Gene family encoding translationally controlled tumour protein (TCTP) is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis. The release of the genome sequence of Acropora digitifera, Exaiptasia pallida, Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians. -
Preliminary Guide to the Identification of the Early Life History Stages
NOAA Technical Memorandum NMFS-SEFSC-416 PRELIMINARY GUIDE TO TIm IDENTIFICATION OF TIm EARLY LlFE mSTORY STAGES OF BLENNIOID FISHES OF THE WBSTHRN CENTR.AL.ATLANTIC, FAUNAL LIST ANI) MERISTIC DATA FOR All KNOWN BLENNIOID SPECIES gy MARrIN R. CAVALLUZZI AND JOHN E. OLNEY U.S. DEPARTMENT OF COMMERCE National Oceanic and Atniospheric Administration National Marine Fisheries Service Southeast Fisheries Science Center 75 Virginia Beach Drive Miami. Florida 33149 December 1998 NOAA Teclmical Memorandum NMFS-SEFSC-416 PRELlMINARY GUIDE TO TIlE IDBNTIFlCA110N OF TIlE EARLY LIFE HISTORY STAGES OF BLBNNIOm FISHES OF TIm WBSTBRN CBN'l'R.At·A11..ANi'IC, FAUNAL LIST AND MERISllC DATA" -. FOR ALL KNOWN BLBNNIOID SPECJBS BY ~TIN R. CAVALLUZZI AND JOHN E. OLNEY u.s. DBPAR'I'MffiIT OF COMMERCB William M:Daley, Secretary NatioDal Oceanic and Atmospheric Administration D. JIjDlCS Baker, Under Secretary for OCeaJI.Sand Atmosphere National Marine Fisheries Service , Rolland A. Scbmitten, Assistant Administrator for Fisheries December 1998 This Technical Memorandum series is Used for documentation and timely cot:mD1Urlcationofpreliminazy results, interim reports, or similar special-purpose information. Although the memoranda are not subject to complete formal review, editoPal control, or de1Biled editing, they are expected to reflect smmd professional work. NOTICE .The National Mariiie Fisheries Service (NMFS) does not approve, recommend or endorse any proprietary product or material mentioned in this publication. No reference shati be made to NMFS or to this publication furi:rished by NMFS, in any advertising or salespromoiion which would imply that NMFS approves, recommends, or endorses any proprietary product or proprietary material mentioned herein or which has as its purpose any mtent to cause directly or indirectly the advertised product to be used or purchased because of this NMFS publication. -
Alternative Stable States of Tidal Marsh Vegetation Patterns and Channel Complexity
ECOHYDROLOGY Ecohydrol. (2016) Published online in Wiley Online Library (wileyonlinelibrary.com) DOI: 10.1002/eco.1755 Alternative stable states of tidal marsh vegetation patterns and channel complexity K. B. Moffett1* and S. M. Gorelick2 1 School of the Environment, Washington State University Vancouver, Vancouver, WA, USA 2 Department of Earth System Science, Stanford University, Stanford, CA, USA ABSTRACT Intertidal marshes develop between uplands and mudflats, and develop vegetation zonation, via biogeomorphic feedbacks. Is the spatial configuration of vegetation and channels also biogeomorphically organized at the intermediate, marsh-scale? We used high-resolution aerial photographs and a decision-tree procedure to categorize marsh vegetation patterns and channel geometries for 113 tidal marshes in San Francisco Bay estuary and assessed these patterns’ relations to site characteristics. Interpretation was further informed by generalized linear mixed models using pattern-quantifying metrics from object-based image analysis to predict vegetation and channel pattern complexity. Vegetation pattern complexity was significantly related to marsh salinity but independent of marsh age and elevation. Channel complexity was significantly related to marsh age but independent of salinity and elevation. Vegetation pattern complexity and channel complexity were significantly related, forming two prevalent biogeomorphic states: complex versus simple vegetation-and-channel configurations. That this correspondence held across marsh ages (decades to millennia) -
The Fourteenth Colony: Florida and the American Revolution in the South
THE FOURTEENTH COLONY: FLORIDA AND THE AMERICAN REVOLUTION IN THE SOUTH By ROGER C. SMITH A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 2011 1 © 2011 Roger C. Smith 2 To my mother, who generated my fascination for all things historical 3 ACKNOWLEDGMENTS I would like to thank Jon Sensbach and Jessica Harland-Jacobs for their patience and edification throughout the entire writing process. I would also like to thank Ida Altman, Jack Davis, and Richmond Brown for holding my feet to the path and making me a better historian. I owe a special debt to Jim Cusack, John Nemmers, and the rest of the staff at the P.K. Yonge Library of Florida History and Special Collections at the University of Florida for introducing me to this topic and allowing me the freedom to haunt their facilities and guide me through so many stages of my research. I would be sorely remiss if I did not thank Steve Noll for his efforts in promoting the University of Florida’s history honors program, Phi Alpha Theta; without which I may never have met Jim Cusick. Most recently I have been humbled by the outpouring of appreciation and friendship from the wonderful people of St. Augustine, Florida, particularly the National Association of Colonial Dames, the ladies of the Women’s Exchange, and my colleagues at the St. Augustine Lighthouse and Museum and the First America Foundation, who have all become cherished advocates of this project. -
University of California, Berkeley Student Research Papers, Fall 1996
Q H /ironmental Science, Policy and Management 107, Geography 142, IDS 158, and Integrative Biology 198 *• M6 B56 T he B iology and G eomorphology 1996 BIOS of T ropical Isla n d s RESERVES Student Research Papers, Fall 1996 Richard B. Gump South Pacific Biological Research Station Moorea, French Polynesia University of California, Berkeley A b o v e : The 1996 Moorea Class, on the front lawn of the Gump Research Station, with Cook's Bay and fringing reef in the background. Standing, from left: Jenmfer Conners, Morgan Hannaford (Graduate Student Instructor), Sandra Trujillo, Solomon Dobrowski, Brent Mishler (Professor, IB), Ylva Carosone, Stephanie Yelenik, Joanna Canepa, Kendra Bergstrom, Peter Weber (Graduate Student Instructor), Julianne Ludwig, Larry Rabin, Damien Filiatrault, Steve Strand (Executive Director, Gump Research Station), and Carole Hickman (Professor, IB). Reclining or seated, from left: Xavier Mayali, Chris Feldman, Sapna Khandwala, Isa Woo, Tracy Benning (Professor, ESPM), Patricia Sanchez Baracaldo (Graduate Student Instructor), and Michael Emmett. B elo w : The beach and lagoon atTetiaroa, site of a class field trip, with Tahiti (left) and Moorea (right) in the background. Environmental Science, Policy and Management 107, Geography 142, IDS 158, Integrative Biology 158 ' ? /A (e 1996 Student Research papers TABLE OF CONTENTS NK\\V0l( \cK $[05 Introductory remarks. Brent D. Mishler 1 The distribution and morphology of seagrass (Halophila Michael Alan Emmett 2 decipiens) in Moorea, French Polynesia. Zonation of lagoon algae in Moorea, French Polynesia. Xavier Mayali 15 Distributional patterns of mobile epifauna associated with Kendra G. Bergstrom 26 two species of brown algae (Phaeophyta) in a tropical reef ecosystem. -
Microbiomes of Gall-Inducing Copepod Crustaceans from the Corals Stylophora Pistillata (Scleractinia) and Gorgonia Ventalina
www.nature.com/scientificreports OPEN Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata Received: 26 February 2018 Accepted: 18 July 2018 (Scleractinia) and Gorgonia Published: xx xx xxxx ventalina (Alcyonacea) Pavel V. Shelyakin1,2, Sofya K. Garushyants1,3, Mikhail A. Nikitin4, Sofya V. Mudrova5, Michael Berumen 5, Arjen G. C. L. Speksnijder6, Bert W. Hoeksema6, Diego Fontaneto7, Mikhail S. Gelfand1,3,4,8 & Viatcheslav N. Ivanenko 6,9 Corals harbor complex and diverse microbial communities that strongly impact host ftness and resistance to diseases, but these microbes themselves can be infuenced by stresses, like those caused by the presence of macroscopic symbionts. In addition to directly infuencing the host, symbionts may transmit pathogenic microbial communities. We analyzed two coral gall-forming copepod systems by using 16S rRNA gene metagenomic sequencing: (1) the sea fan Gorgonia ventalina with copepods of the genus Sphaerippe from the Caribbean and (2) the scleractinian coral Stylophora pistillata with copepods of the genus Spaniomolgus from the Saudi Arabian part of the Red Sea. We show that bacterial communities in these two systems were substantially diferent with Actinobacteria, Alphaproteobacteria, and Betaproteobacteria more prevalent in samples from Gorgonia ventalina, and Gammaproteobacteria in Stylophora pistillata. In Stylophora pistillata, normal coral microbiomes were enriched with the common coral symbiont Endozoicomonas and some unclassifed bacteria, while copepod and gall-tissue microbiomes were highly enriched with the family ME2 (Oceanospirillales) or Rhodobacteraceae. In Gorgonia ventalina, no bacterial group had signifcantly diferent prevalence in the normal coral tissues, copepods, and injured tissues. The total microbiome composition of polyps injured by copepods was diferent. -
Long-Term Recruitment of Soft-Corals (Octocorallia: Alcyonacea) on Artificial Substrata at Eilat (Red Sea)
MARINE ECOLOGY - PROGRESS SERIES Vol. 38: 161-167, 1987 Published June 18 Mar. Ecol. Prog. Ser. Long-term recruitment of soft-corals (Octocorallia: Alcyonacea) on artificial substrata at Eilat (Red Sea) Y.Benayahu & Y.Loya Department of Zoology. The George S. Wise Center for Life Sciences, Tel Aviv University, Tel Aviv 69978. Israel ABSTRACT: Recruitment of soft corals (Octocorallia: Alcyonacea) on concrete plates was studied in the reefs of the Nature Reserve of Eilat at depths of 17 to 29 m over 12 yr. Xenia macrospiculata was the pioneering species, appealing on the vast majority of the plates before any other spat. This species remained the most conspicuous inhabitant of the substrata throughout the whole study. Approximately 10 % of the plates were very extensively colonized by X. rnacrospiculata, resembling the percentage of living coverage by the species in the surrounding reef, thus suggesting that during the study X. rnacrospiculata populations reached their maximal potential to capture the newly available substrata. The successive appearance of an additional 11 soft coral species was recorded. The species composition of the recruits and their abundance corresponded with the soft coral community in the natural reef, indicahng that the estabhshed spat were progeny of the local populations. Soft coral recruits utilized the edges and lower surfaces of the plates most successfully, rather than the exposed upper surfaces. Such preferential settling of alcyonaceans allows the spat to escape from unfavourable conditions and maintains their high survival in the established community. INTRODUCTION determine the role played by alcyonaceans in the course of reef colonization and in the reef's space Studies on processes and dynamics of reef benthic allocation. -
Caribbean Appeals Appeals by Colony
CARIBBEAN APPEALS including Antigua, Bahamas, Barbados, Bermuda, Dominica, East Florida, Grenada, Guiana, Jamaica, Leeward Islands, Montserrat, Nevis, St. Christopher, St. Vincent, Tobago, Tortola, West Florida This preliminary list of appeals was constructed from index entries in the Acts of the Privy Council, Colonial Series (APC), beginning with the year 1674 and ending with 1783. The focus is on appeals or petitions for leave to appeal with a definite lower court decision. A list by colony and section number of matters indexed as appeals but for which no lower court decision is apparent is provided for each volume of the APC. A smattering of disputes, not indexed as appeals (and so noted in this list), are included if the APC abstract uses appeals language. Prize cases are not included if the matter was referred to the Committee for Hearing Appeals on Prize. Appeals are listed according to the location in the margin note unless otherwise explained. The spelling of the names of parties is accepted as presented in the APC abstracts. Appeals with John Doe or Richard Roe as named parties are treated as if those parties were individuals. Significant doubt about the identity of the respondent(s) results in the designation ‘X, appeal of” as the name of the case. Given the abbreviated nature of the abstracts, additional research in the Privy Council registers, in genealogical records, and on matters of procedure will be needed to clarify the case names throughout and establish their accuracy. If the APC only uses wording such as “petition of John Jones referred,” the action was not assumed to be an appeal. -
A Case of Modular Phenotypic Plasticity in the Depth
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Springer - Publisher Connector Calixto-Botía and Sánchez BMC Evolutionary Biology (2017) 17:55 DOI 10.1186/s12862-017-0900-8 RESEARCH ARTICLE Open Access A case of modular phenotypic plasticity in the depth gradient for the gorgonian coral Antillogorgia bipinnata (Cnidaria: Octocorallia) Iván Calixto-Botía1,2* and Juan A. Sánchez2,3 Abstract Background: Phenotypic plasticity, as a phenotypic response induced by the environment, has been proposed as a key factor in the evolutionary history of corals. A significant number of octocoral species show high phenotypic variation, exhibiting a strong overlap in intra- and inter-specific morphologic variation. This is the case of the gorgonian octocoral Antillogorgia bipinnata (Verrill 1864), which shows three polyphyletic morphotypes along a bathymetric gradient. This research tested the phenotypic plasticity of modular traits in A. bipinnata with a reciprocal transplant experiment involving 256 explants from two morphotypes in two locations and at two depths. Vertical and horizontal length and number of new branches were compared 13 weeks following transplant. The data were analysed with a linear mixed-effects model and a graphic approach by reaction norms. Results: At the end of the experiment, 91.8% of explants survived. Lower vertical and horizontal growth rates and lower branch promotion were found for deep environments compared to shallow environments. The overall variation behaved similarly to the performance of native transplants. In particular, promotion of new branches showed variance mainly due to a phenotypic plastic effect. Conclusions: Globally, environmental and genotypic effects explain the variation of the assessed traits. -
Table B – Subclass Octocorallia
Table B – Subclass Octocorallia BINOMEN ORDER SUBORDER FAMILY SUBFAMILY GENUS SPECIES SUBSPECIES COMN_NAMES AUTHORITY SYNONYMS #Records Acanella arbuscula Alcyonacea Calcaxonia Isididae n/a Acanella arbuscula n/a n/a n/a n/a 59 Acanthogorgia armata Alcyonacea Holaxonia Acanthogorgiidae n/a Acanthogorgia armata n/a n/a Verrill, 1878 n/a 95 Anthomastus agassizii Alcyonacea Alcyoniina Alcyoniidae n/a Anthomastus agassizii n/a n/a (Verrill, 1922) n/a 35 Anthomastus grandiflorus Alcyonacea Alcyoniina Alcyoniidae n/a Anthomastus grandiflorus n/a n/a Verrill, 1878 Anthomastus purpureus 37 Anthomastus sp. Alcyonacea Alcyoniina Alcyoniidae n/a Anthomastus sp. n/a n/a Verrill, 1878 n/a 1 Anthothela grandiflora Alcyonacea Scleraxonia Anthothelidae n/a Anthothela grandiflora n/a n/a (Sars, 1856) n/a 24 Capnella florida Alcyonacea n/a Nephtheidae n/a Capnella florida n/a n/a (Verrill, 1869) Eunephthya florida 44 Capnella glomerata Alcyonacea n/a Nephtheidae n/a Capnella glomerata n/a n/a (Verrill, 1869) Eunephthya glomerata 4 Chrysogorgia agassizii Alcyonacea Holaxonia Acanthogorgiidae Chrysogorgiidae Chrysogorgia agassizii n/a n/a (Verrill, 1883) n/a 2 Clavularia modesta Alcyonacea n/a Clavulariidae n/a Clavularia modesta n/a n/a (Verrill, 1987) n/a 6 Clavularia rudis Alcyonacea n/a Clavulariidae n/a Clavularia rudis n/a n/a (Verrill, 1922) n/a 1 Gersemia fruticosa Alcyonacea Alcyoniina Alcyoniidae n/a Gersemia fruticosa n/a n/a Marenzeller, 1877 n/a 3 Keratoisis flexibilis Alcyonacea Calcaxonia Isididae n/a Keratoisis flexibilis n/a n/a Pourtales, 1868 n/a 1 Lepidisis caryophyllia Alcyonacea n/a Isididae n/a Lepidisis caryophyllia n/a n/a Verrill, 1883 Lepidisis vitrea 13 Muriceides sp. -
Deep-Sea Origin and In-Situ Diversification of Chrysogorgiid Octocorals
Deep-Sea Origin and In-Situ Diversification of Chrysogorgiid Octocorals Eric Pante1*¤, Scott C. France1, Arnaud Couloux2, Corinne Cruaud2, Catherine S. McFadden3, Sarah Samadi4, Les Watling5,6 1 Department of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana, United States of America, 2 GENOSCOPE, Centre National de Se´quenc¸age, Evry, France, 3 Department of Biology, Harvey Mudd College, Claremont, California, United States of America, 4 De´partement Syste´matique et Evolution, UMR 7138 UPMC-IRD-MNHN- CNRS (UR IRD 148), Muse´um national d’Histoire naturelle, Paris, France, 5 Department of Biology, University of Hawaii at Manoa, Honolulu, Hawaii, United States of America, 6 Darling Marine Center, University of Maine, Walpole, Maine, United States of America Abstract The diversity, ubiquity and prevalence in deep waters of the octocoral family Chrysogorgiidae Verrill, 1883 make it noteworthy as a model system to study radiation and diversification in the deep sea. Here we provide the first comprehensive phylogenetic analysis of the Chrysogorgiidae, and compare phylogeny and depth distribution. Phylogenetic relationships among 10 of 14 currently-described Chrysogorgiidae genera were inferred based on mitochondrial (mtMutS, cox1) and nuclear (18S) markers. Bathymetric distribution was estimated from multiple sources, including museum records, a literature review, and our own sampling records (985 stations, 2345 specimens). Genetic analyses suggest that the Chrysogorgiidae as currently described is a polyphyletic family. Shallow-water genera, and two of eight deep-water genera, appear more closely related to other octocoral families than to the remainder of the monophyletic, deep-water chrysogorgiid genera. Monophyletic chrysogorgiids are composed of strictly (Iridogorgia Verrill, 1883, Metallogorgia Versluys, 1902, Radicipes Stearns, 1883, Pseudochrysogorgia Pante & France, 2010) and predominantly (Chrysogorgia Duchassaing & Michelotti, 1864) deep-sea genera that diversified in situ.