Entomoplasmatales) Associated with Tabanidae (Diptera) and Lampyridae (Coleoptera
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Spiroplasma Arp Sequences: Relationships
SPIROPLASMA ARP SEQUENCES: RELATIONSHIPS WITH EXTRACHROMOSOMAL ELEMENTS By BHARAT DILIP JOSHI Bachelor of Science University of Pune, India 1995 Master of Science University of Pune, India 1997 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY July, 2006 SPIROPLASMA ARP SEQUENCES: RELATIONSHIPS WITH EXTRACHROMOSOMAL ELEMENTS Dissertation Approved: Dr. Ulrich K. Melcher Dissertation Adviser Dr. Andrew J. Mort Dr. Robert L. Matts Dr. Richard C. Essenberg ________________________________________________ Dr. Jacqueline Fletcher Dr. A. Gordon Emslie Dean of the Graduate College ii TABLE OF CONTENTS Chapter Page I. LITERATURE REVIEW ............................................................................... 1 Background ........................................................................................... 1 Economic Importance............................................................................ 1 Classification ......................................................................................... 2 Transmission in Nature ......................................................................... 3 Molecular Mollicute-host Interactions .................................................. 4 Molecular Spiroplasma-host Interactions ............................................. 4 Mollicute Extrachromosomal DNAs .................................................... 7 Objectives of the Present Study ........................................................... -
Spiroplasma Infection Among Ixodid Ticks Exhibits Species Dependence and Suggests a Vertical Pattern of Transmission
microorganisms Article Spiroplasma Infection among Ixodid Ticks Exhibits Species Dependence and Suggests a Vertical Pattern of Transmission Shohei Ogata 1, Wessam Mohamed Ahmed Mohamed 1 , Kodai Kusakisako 1,2, May June Thu 1,†, Yongjin Qiu 3 , Mohamed Abdallah Mohamed Moustafa 1,4 , Keita Matsuno 5,6 , Ken Katakura 1, Nariaki Nonaka 1 and Ryo Nakao 1,* 1 Laboratory of Parasitology, Department of Disease Control, Faculty of Veterinary Medicine, Graduate School of Infectious Diseases, Hokkaido University, N 18 W 9, Kita-ku, Sapporo 060-0818, Japan; [email protected] (S.O.); [email protected] (W.M.A.M.); [email protected] (K.K.); [email protected] (M.J.T.); [email protected] (M.A.M.M.); [email protected] (K.K.); [email protected] (N.N.) 2 Laboratory of Veterinary Parasitology, School of Veterinary Medicine, Kitasato University, Towada, Aomori 034-8628, Japan 3 Hokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, The University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia; [email protected] 4 Department of Animal Medicine, Faculty of Veterinary Medicine, South Valley University, Qena 83523, Egypt 5 Unit of Risk Analysis and Management, Research Center for Zoonosis Control, Hokkaido University, N 20 W 10, Kita-ku, Sapporo 001-0020, Japan; [email protected] 6 International Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, N 20 W 10, Kita-ku, Sapporo 001-0020, Japan Citation: Ogata, S.; Mohamed, * Correspondence: [email protected]; Tel.: +81-11-706-5196 W.M.A.; Kusakisako, K.; Thu, M.J.; † Present address: Food Control Section, Department of Food and Drug Administration, Ministry of Health and Sports, Zabu Thiri, Nay Pyi Taw 15011, Myanmar. -
The Obligate Endobacteria of Arbuscular Mycorrhizal Fungi Are Ancient Heritable Components Related to the Mollicutes
The ISME Journal (2010) 4, 862–871 & 2010 International Society for Microbial Ecology All rights reserved 1751-7362/10 $32.00 www.nature.com/ismej ORIGINAL ARTICLE The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes Maria Naumann1,2, Arthur Schu¨ ler2 and Paola Bonfante1 1Department of Plant Biology, University of Turin and IPP-CNR, Turin, Italy and 2Department of Biology, Inst. Genetics, University of Munich (LMU), Planegg-Martinsried, Germany Arbuscular mycorrhizal fungi (AMF) have been symbionts of land plants for at least 450 Myr. It is known that some AMF host in their cytoplasm Gram-positive endobacteria called bacterium-like organisms (BLOs), of unknown phylogenetic origin. In this study, an extensive inventory of 28 cultured AMF, from diverse evolutionary lineages and four continents, indicated that most of the AMF species investigated possess BLOs. Analyzing the 16S ribosomal DNA (rDNA) as a phylogenetic marker revealed that BLO sequences from divergent lineages all clustered in a well- supported monophyletic clade. Unexpectedly, the cell-walled BLOs were shown to likely represent a sister clade of the Mycoplasmatales and Entomoplasmatales, within the Mollicutes, whose members are lacking cell walls and show symbiotic or parasitic lifestyles. Perhaps BLOs maintained the Gram-positive trait whereas the sister groups lost it. The intracellular location of BLOs was revealed by fluorescent in situ hybridization (FISH), and confirmed by pyrosequencing. BLO DNA could only be amplified from AMF spores and not from spore washings. As highly divergent BLO sequences were found within individual fungal spores, amplicon libraries derived from Glomus etunicatum isolates from different geographic regions were pyrosequenced; they revealed distinct sequence compositions in different isolates. -
1 Appendix 3. Thousand Islands National Park Taxonomy Report
Appendix 3. Thousand Islands National Park Taxonomy Report Class Order Family Genus Species Arachnida Araneae Agelenidae Agelenopsis Agelenopsis potteri Agelenopsis utahana Anyphaenidae Anyphaena Anyphaena celer Hibana Hibana gracilis Araneidae Araneus Araneus bicentenarius Larinioides Larinioides cornutus Larinioides patagiatus Clubionidae Clubiona Clubiona abboti Clubiona bishopi Clubiona canadensis Clubiona kastoni Clubiona obesa Clubiona pygmaea Elaver Elaver excepta Corinnidae Castianeira Castianeira cingulata Phrurolithus Phrurolithus festivus Dictynidae Emblyna Emblyna cruciata Emblyna sublata Eutichuridae Strotarchus Strotarchus piscatorius Gnaphosidae Herpyllus Herpyllus ecclesiasticus Zelotes Zelotes hentzi Linyphiidae Ceraticelus Ceraticelus atriceps 1 Collinsia Collinsia plumosa Erigone Erigone atra Hypselistes Hypselistes florens Microlinyphia Microlinyphia mandibulata Neriene Neriene radiata Soulgas Soulgas corticarius Spirembolus Lycosidae Pardosa Pardosa milvina Pardosa moesta Piratula Piratula canadensis Mimetidae Mimetus Mimetus notius Philodromidae Philodromus Philodromus peninsulanus Philodromus rufus vibrans Philodromus validus Philodromus vulgaris Thanatus Thanatus striatus Phrurolithidae Phrurotimpus Phrurotimpus borealis Pisauridae Dolomedes Dolomedes tenebrosus Dolomedes triton Pisaurina Pisaurina mira Salticidae Eris Eris militaris Hentzia Hentzia mitrata Naphrys Naphrys pulex Pelegrina Pelegrina proterva Tetragnathidae Tetragnatha 2 Tetragnatha caudata Tetragnatha shoshone Tetragnatha straminea Tetragnatha viridis -
Bacterial Communities of the Upper Respiratory Tract of Turkeys
www.nature.com/scientificreports OPEN Bacterial communities of the upper respiratory tract of turkeys Olimpia Kursa1*, Grzegorz Tomczyk1, Anna Sawicka‑Durkalec1, Aleksandra Giza2 & Magdalena Słomiany‑Szwarc2 The respiratory tracts of turkeys play important roles in the overall health and performance of the birds. Understanding the bacterial communities present in the respiratory tracts of turkeys can be helpful to better understand the interactions between commensal or symbiotic microorganisms and other pathogenic bacteria or viral infections. The aim of this study was the characterization of the bacterial communities of upper respiratory tracks in commercial turkeys using NGS sequencing by the amplifcation of 16S rRNA gene with primers designed for hypervariable regions V3 and V4 (MiSeq, Illumina). From 10 phyla identifed in upper respiratory tract in turkeys, the most dominated phyla were Firmicutes and Proteobacteria. Diferences in composition of bacterial diversity were found at the family and genus level. At the genus level, the turkey sequences present in respiratory tract represent 144 established bacteria. Several respiratory pathogens that contribute to the development of infections in the respiratory system of birds were identifed, including the presence of Ornithobacterium and Mycoplasma OTUs. These results obtained in this study supply information about bacterial composition and diversity of the turkey upper respiratory tract. Knowledge about bacteria present in the respiratory tract and the roles they can play in infections can be useful in controlling, diagnosing and treating commercial turkey focks. Next-generation sequencing has resulted in a marked increase in culture-independent studies characterizing the microbiome of humans and animals1–6. Much of these works have been focused on the gut microbiome of humans and other production animals 7–11. -
Newsletter of the Biological Survey of Canada
Newsletter of the Biological Survey of Canada Vol. 40(1) Summer 2021 The Newsletter of the BSC is published twice a year by the In this issue Biological Survey of Canada, an incorporated not-for-profit From the editor’s desk............2 group devoted to promoting biodiversity science in Canada. Membership..........................3 President’s report...................4 BSC Facebook & Twitter...........5 Reminder: 2021 AGM Contributing to the BSC The Annual General Meeting will be held on June 23, 2021 Newsletter............................5 Reminder: 2021 AGM..............6 Request for specimens: ........6 Feature Articles: Student Corner 1. City Nature Challenge Bioblitz Shawn Abraham: New Student 2021-The view from 53.5 °N, Liaison for the BSC..........................7 by Greg Pohl......................14 Mayflies (mainlyHexagenia sp., Ephemeroptera: Ephemeridae): an 2. Arthropod Survey at Fort Ellice, MB important food source for adult by Robert E. Wrigley & colleagues walleye in NW Ontario lakes, by A. ................................................18 Ricker-Held & D.Beresford................8 Project Updates New book on Staphylinids published Student Corner by J. Klimaszewski & colleagues......11 New Student Liaison: Assessment of Chironomidae (Dip- Shawn Abraham .............................7 tera) of Far Northern Ontario by A. Namayandeh & D. Beresford.......11 Mayflies (mainlyHexagenia sp., Ephemerop- New Project tera: Ephemeridae): an important food source Help GloWorm document the distribu- for adult walleye in NW Ontario lakes, tion & status of native earthworms in by A. Ricker-Held & D.Beresford................8 Canada, by H.Proctor & colleagues...12 Feature Articles 1. City Nature Challenge Bioblitz Tales from the Field: Take me to the River, by Todd Lawton ............................26 2021-The view from 53.5 °N, by Greg Pohl..............................14 2. -
Army Ants Harbor a Host-Specific Clade of Entomoplasmatales Bacteria
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Jan. 2011, p. 346–350 Vol. 77, No. 1 0099-2240/11/$12.00 doi:10.1128/AEM.01896-10 Copyright © 2011, American Society for Microbiology. All Rights Reserved. Army Ants Harbor a Host-Specific Clade of Entomoplasmatales Bacteriaᰔ† Colin F. Funaro,1¶ Daniel J. C. Kronauer,2 Corrie S. Moreau,3 Benjamin Goldman-Huertas,2§ Naomi E. Pierce,2 and Jacob A. Russell1* Department of Biology, Drexel University, Philadelphia, Pennsylvania 191041; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 021382; and Department of Zoology, Field Museum of Natural History, Chicago, Illinois 606053 Received 9 August 2010/Accepted 30 October 2010 In this article, we describe the distributions of Entomoplasmatales bacteria across the ants, identifying a novel lineage of gut bacteria that is unique to the army ants. While our findings indicate that the Entomoplasmatales are not essential for growth or development, molecular analyses suggest that this relationship is host specific and potentially ancient. The documented trends add to a growing body of literature that hints at a diversity of undiscovered associations between ants and bacterial symbionts. The ants are a diverse and abundant group of arthropods bacteria from the order Entomoplasmatales (phylum Teneri- that have evolved symbiotic relationships with a wide diversity cutes; class Mollicutes) (41). Although they can act as plant and of organisms, including bacteria (52, 55). Although bacteria vertebrate pathogens (16, 47), these small-genome and wall- comprise one of the least studied groups of symbiotic partners less bacteria have more typically been found across multiple across these insects, even our limited knowledge suggests that insect groups (6, 18, 20, 31, 33, 49, 51), where their phenotypic they have played integral roles in the success of herbivorous effects range from mutualistic (14, 23) to detrimental (6, 34) or and fungivorous ants (9, 12, 15, 37, 41). -
Global Metagenomic Survey Reveals a New Bacterial Candidate Phylum in Geothermal Springs
ARTICLE Received 13 Aug 2015 | Accepted 7 Dec 2015 | Published 27 Jan 2016 DOI: 10.1038/ncomms10476 OPEN Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs Emiley A. Eloe-Fadrosh1, David Paez-Espino1, Jessica Jarett1, Peter F. Dunfield2, Brian P. Hedlund3, Anne E. Dekas4, Stephen E. Grasby5, Allyson L. Brady6, Hailiang Dong7, Brandon R. Briggs8, Wen-Jun Li9, Danielle Goudeau1, Rex Malmstrom1, Amrita Pati1, Jennifer Pett-Ridge4, Edward M. Rubin1,10, Tanja Woyke1, Nikos C. Kyrpides1 & Natalia N. Ivanova1 Analysis of the increasing wealth of metagenomic data collected from diverse environments can lead to the discovery of novel branches on the tree of life. Here we analyse 5.2 Tb of metagenomic data collected globally to discover a novel bacterial phylum (‘Candidatus Kryptonia’) found exclusively in high-temperature pH-neutral geothermal springs. This lineage had remained hidden as a taxonomic ‘blind spot’ because of mismatches in the primers commonly used for ribosomal gene surveys. Genome reconstruction from metagenomic data combined with single-cell genomics results in several high-quality genomes representing four genera from the new phylum. Metabolic reconstruction indicates a heterotrophic lifestyle with conspicuous nutritional deficiencies, suggesting the need for metabolic complementarity with other microbes. Co-occurrence patterns identifies a number of putative partners, including an uncultured Armatimonadetes lineage. The discovery of Kryptonia within previously studied geothermal springs underscores the importance of globally sampled metagenomic data in detection of microbial novelty, and highlights the extraordinary diversity of microbial life still awaiting discovery. 1 Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA. 2 Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada. -
Bacterial Infections Across the Ants: Frequency and Prevalence of Wolbachia, Spiroplasma, and Asaia
Hindawi Publishing Corporation Psyche Volume 2013, Article ID 936341, 11 pages http://dx.doi.org/10.1155/2013/936341 Research Article Bacterial Infections across the Ants: Frequency and Prevalence of Wolbachia, Spiroplasma,andAsaia Stefanie Kautz,1 Benjamin E. R. Rubin,1,2 and Corrie S. Moreau1 1 Department of Zoology, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USA 2 Committee on Evolutionary Biology, University of Chicago, 1025 East 57th Street, Chicago, IL 60637, USA Correspondence should be addressed to Stefanie Kautz; [email protected] Received 21 February 2013; Accepted 30 May 2013 Academic Editor: David P. Hughes Copyright © 2013 Stefanie Kautz et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Bacterial endosymbionts are common across insects, but we often lack a deeper knowledge of their prevalence across most organisms. Next-generation sequencing approaches can characterize bacterial diversity associated with a host and at the same time facilitate the fast and simultaneous screening of infectious bacteria. In this study, we used 16S rRNA tag encoded amplicon pyrosequencing to survey bacterial communities of 310 samples representing 221 individuals, 176 colonies and 95 species of ants. We found three distinct endosymbiont groups—Wolbachia (Alphaproteobacteria: Rickettsiales), Spiroplasma (Firmicutes: Entomoplasmatales), -
Insects of Larose Forest (Excluding Lepidoptera and Odonates)
Insects of Larose Forest (Excluding Lepidoptera and Odonates) • Non-native species indicated by an asterisk* • Species in red are new for the region EPHEMEROPTERA Mayflies Baetidae Small Minnow Mayflies Baetidae sp. Small minnow mayfly Caenidae Small Squaregills Caenidae sp. Small squaregill Ephemerellidae Spiny Crawlers Ephemerellidae sp. Spiny crawler Heptageniiidae Flatheaded Mayflies Heptageniidae sp. Flatheaded mayfly Leptophlebiidae Pronggills Leptophlebiidae sp. Pronggill PLECOPTERA Stoneflies Perlodidae Perlodid Stoneflies Perlodid sp. Perlodid stonefly ORTHOPTERA Grasshoppers, Crickets and Katydids Gryllidae Crickets Gryllus pennsylvanicus Field cricket Oecanthus sp. Tree cricket Tettigoniidae Katydids Amblycorypha oblongifolia Angular-winged katydid Conocephalus nigropleurum Black-sided meadow katydid Microcentrum sp. Leaf katydid Scudderia sp. Bush katydid HEMIPTERA True Bugs Acanthosomatidae Parent Bugs Elasmostethus cruciatus Red-crossed stink bug Elasmucha lateralis Parent bug Alydidae Broad-headed Bugs Alydus sp. Broad-headed bug Protenor sp. Broad-headed bug Aphididae Aphids Aphis nerii Oleander aphid* Paraprociphilus tesselatus Woolly alder aphid Cicadidae Cicadas Tibicen sp. Cicada Cicadellidae Leafhoppers Cicadellidae sp. Leafhopper Coelidia olitoria Leafhopper Cuernia striata Leahopper Draeculacephala zeae Leafhopper Graphocephala coccinea Leafhopper Idiodonus kelmcottii Leafhopper Neokolla hieroglyphica Leafhopper 1 Penthimia americana Leafhopper Tylozygus bifidus Leafhopper Cercopidae Spittlebugs Aphrophora cribrata -
Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions
Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions Weijie Huang, Paola Reyes-Caldas, Marina Mann, Shirin Seifbarghi, Alexandra Kahn, Rodrigo P.P. Almeida, Laure Béven, Michelle Heck, Saskia Hogenhout, Gitta Coaker To cite this version: Weijie Huang, Paola Reyes-Caldas, Marina Mann, Shirin Seifbarghi, Alexandra Kahn, et al.. Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions. Molecular Plant, Cell Press/Oxford UP, 2020, 13 (10), pp.1379-1393. 10.1016/j.molp.2020.08.010. hal-03035576 HAL Id: hal-03035576 https://hal.inrae.fr/hal-03035576 Submitted on 2 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NonCommercial - NoDerivatives| 4.0 International License Molecular Plant ll Perspective Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions Weijie Huang1,9, Paola Reyes-Caldas2,9, Marina Mann3,9, Shirin Seifbarghi2,9, Alexandra Kahn4,9, Rodrigo P.P. Almeida4, Laure Be´ ven5, Michelle Heck3,6,7, Saskia A. Hogenhout1,8 and Gitta Coaker2,* 1Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK 2Department of Plant Pathology, University of California, Davis, CA, 95616, USA 3Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY 14853, USA 4Department of Environmental Science, Policy and Management, University of California, Berkeley, CA 94720, USA 5UMR 1332 Biologie du Fruit et Pathologie, Univ. -
Spiroplasmas Infectious Agents of Plants
Available online a t www.pelagiaresearchlibrary.com Pelagia Research Library European Journal of Experimental Biology, 2013, 3(1):583-591 ISSN: 2248 –9215 CODEN (USA): EJEBAU Spiroplasmas infectious agents of plants 1,5 * 1 2,5 3,5 4,5 Rivera A , Cedillo L , Hernández F , Romero O and Hernández MA 1Laboratorio de micoplasmas del Instituto de Ciencias de la Benemérita Universidad Autónoma de Puebla 2Centro de Química del Instituto de Ciencias de la Benemérita Universidad Autónoma de Puebla. 3Centro de Agroecología del Instituto de Ciencias de la Benemérita Universidad Autónoma de Puebla. 4Departamento de Investigación en Zeolitas del Instituto de Ciencias de la Benemérita Universidad Autónoma de Puebla. 5Maestría en Manejo Sostenible de Agroecosistemas, Instituto de Ciencias de la Benemérita Universidad Autónoma de Puebla, México. _____________________________________________________________________________________________ ABSTRACT The aim is to present a review of the main features that point to the spiroplasmas as plant pathogens. Spiroplasmas are most often found in association with plants and insects and plants flowers, and the interactions of spiroplasma/host can be classified as commensal, pathogenic or mutualistic. Some insect-derived spiroplasmas are entomopathogens. S. melliferum and S. apis are honey bee pathogens. They cross the insect-gut barrier and reach the hemolymph, where multiply abundantly and kill the bee. Many insects spiroplasmas are not pathogenic, are often restricted to the gut and may be regarded as mutualists or incidental commensals. Among the many components important for growth of spiroplasmas, lipids are some of the most significant. Like members of the genus Mycoplasma, the spiroplasmas so far examined are incapable of the biosynthesis of cholesterol and long- chain fatty acids.