CHECKLIST Ex Situ Conservation of Orchids of Northeast India In
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An Integrated Orchid Functional Genomics Database
Orchidstra: An Integrated Orchid Functional Genomics Database Special Focus Issue Chun-lin Su1,3, Ya-Ting Chao1,3, Shao-Hua Yen1, Chun-Yi Chen1, Wan-Chieh Chen1, Yao-Chien Alex Chang2 and Ming-Che Shih1,* 1Agricultural Biotechnology Research Center, Academia Sinica, Taipei 11529, Taiwan 2Department of Horticulture and Landscape Architecture, National Taiwan University, Taipei 10617, Taiwan. 3These authors contributed equally to this work. *Corresponding author: E-mail: [email protected]; Fax, +886-2-26515693. (Received November 9, 2012; Accepted January 5, 2013) A specialized orchid database, named Orchidstra (URL: Abbreviations: BLAST, basic local alignment search tool; – Databases http://orchidstra.abrc.sinica.edu.tw), has been constructed CAM, crassulacean acid metabolism; EIF5A, eukaryotic trans- to collect, annotate and share genomic information for lation initiation factor 5A; EST, expressed sequence tag; GO, orchid functional genomics studies. The Orchidaceae is a Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and large family of Angiosperms that exhibits extraordinary bio- Genomes; miRNA, microRNA; NGS, next-generation sequen- diversity in terms of both the number of species and their cing; SRA, sequence read archive; TSA, transcriptome distribution worldwide. Orchids exhibit many unique biolo- shotgun assembly. gical features; however, investigation of these traits is cur- rently constrained due to the limited availability of genomic information. Transcriptome information for five orchid spe- Introduction cies and one commercial hybrid has been included in the Orchidaceae, the orchid family, diverged from the Liliaceae Orchidstra database. Altogether, these comprise >380,000 and Amaryllidaceae, is the largest family of Angiosperms, with non-redundant orchid transcript sequences, of which >800 genera and >25,000 species. -
PGR Diversity and Economic Utilization of Orchids
Int.J.Curr.Microbiol.App.Sci (2019) 8(10): 1865-1887 International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 8 Number 10 (2019) Journal homepage: http://www.ijcmas.com Original Research Article https://doi.org/10.20546/ijcmas.2019.810.217 PGR Diversity and Economic Utilization of Orchids R. K. Pamarthi, R. Devadas, Raj Kumar, D. Rai, P. Kiran Babu, A. L. Meitei, L. C. De, S. Chakrabarthy, D. Barman and D. R. Singh* ICAR-NRC for Orchids, Pakyong, Sikkim, India ICAR-IARI, Kalimpong, West Bengal, India *Corresponding author ABSTRACT Orchids are one of the highly commercial crops in floriculture sector and are robustly exploited due to the high ornamental and economic value. ICAR-NRC for Orchids Pakyong, Sikkim, India, majorly focused on collection, characterization, K e yw or ds evaluation, conservation and utilization of genetic resources available in the country particularly in north-eastern region and developed a National repository of Orchids, Collection, Conservation, orchids. From 1996 to till date, several exploration programmes carried across the Utilization country and a total of 351 species under 94 genera was collected and conserved at Article Info this institute. Among the collections, 205 species were categorized as threatened species, followed by 90 species having breeding value, 87 species which are used Accepted: in traditional medicine, 77 species having fragrance and 11 species were used in 15 September 2019 traditional dietary. Successful DNA bank of 260 species was constructed for Available Online: 10 October 2019 future utilization in various research works. The collected orchid germplasm which includes native orchids was successfully utilized in breeding programme for development of novel varieties and hybrids. -
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report November 2009 Contents 1. Introduction 1 1.1 Background 1 1.2 Scope 1 1.3 Project Study Area 2 2. Methodology 4 2.1 Background and Approach 4 2.2 Demarcation of the Aquifer Study Area 4 2.3 Field Investigation of Proposed Bore Hole Sites 5 2.4 Overview of Ecological Values Descriptions 5 2.5 PER Guidelines 5 2.6 Desktop and Database Assessments 7 3. Database Searches and Survey Results 11 3.1 Information Sources 11 3.2 Species of National Environmental Significance 11 3.3 Queensland Species of Conservation Significance 18 3.4 Pest Species 22 3.5 Vegetation Communities 24 3.6 Regional Ecosystem Types and Integrity 28 3.7 Aquatic Values 31 3.8 World Heritage Values 53 3.9 Results of Field Investigation of Proposed Bore Hole Sites 54 4. References 61 Table Index Table 1: Summary of NES Matters Protected under Part 3 of the EPBC Act 5 Table 2 Summary of World Heritage Values within/adjacent Aquifer Area of Influence 6 Table 3: Species of NES Identified as Occurring within the Study Area 11 Table 4: Summary of Regional Ecosystems and Groundwater Dependencies 26 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report Table 5: Freshwater Fish Species in the Mulgrave River 36 Table 6: Estuarine Fish Species in the Mulgrave River 50 Table 7: Description of potential borehole field in Aloomba as of 20th August, 2009. 55 Figure Index Figure 1: Regional Ecosystem Conservation Status and Protected Species Observation 21 Figure 2: Vegetation Communities and Groundwater Dependencies 30 Figure 3: Locations of Study Sites 54 Appendices A Database Searches 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report 1. -
Toskar Newsletter
TOSKAR NEWSLETTER A Quarterly Newsletter of the Orchid Society of Karnataka (TOSKAR) Vol. No. 4; Issue: ii; 2017 THE ORCHID SOCIETY OF KARNATAKA www.toskar.org ● [email protected] From the Editor’s Desk TOSKAR NEWSLETTER 21st June 2017 The much-awaited monsoon has set in and it is a sight to see EDITORIAL BOARD shiny green and happy leaves and waiting to put forth their best (Vide Circular No. TOSKAR/2016 Dated 20th May 2016) growth and amazing flowers. Orchids in tropics love the monsoon weather and respond with a luxurious growth and it is also time for us (hobbyists) to ensure that our orchids are fed well so that Chairman plants put up good vegetative growth. But do take care of your Dr. Sadananda Hegde plants especially if you are growing them in pots and exposed to continuous rains, you may have problems! it is alright for mounted plants. In addition, all of us have faced problems with Members snails and slugs, watch out for these as they could be devastating. Mr. S. G. Ramakumar Take adequate precautions with regard to onset of fungal and Mr. Sriram Kumar bacterial diseases as the moisture and warmth is ideal for their multiplication. This is also time for division or for propagation if Editor the plants have flowered. Dr. K. S. Shashidhar Many of our members are growing some wonderful species and hybrids in Bangalore conditions and their apt care and culture is Associate Editor seen by the fantastic blooms. Here I always wanted some of them Mr. Ravee Bhat to share their finer points or tips for care with other growers. -
Orchids of Bhutan Susanne Masters Outlines the Species Found in This Small Country In
The orchids in habitat Orchid Review Susanne Masters Susanne Susanne Masters Susanne Orchids of Bhutan SuSanne MaSterS outlines the species found in this small country in the Himalayas, the diversity of their Coelogyne nitida was one of the orchids featured in Bhutan’s set of orchid stamps issued in 1976 habitats, and also discusses uses of Masters Susanne orchids locally and their conservation Epiphytic Dendrobium falconeri can be seen growing on trees near Dochula Pass Susanne Masters Susanne Dochula Pass is a gateway through the mountains when heading east from Butan’s capital, Thimphu. 108 chortens on the pass commemorate Butanese soldiers killed fighting Indian rebels in 2003 Galearis spathulata, prevoiusly Aorchis spathulata, grows on damp ground, in open spaces ➤ 96 June 2015 June 2015 97 The orchids in habitat Orchid Review HuTaNEsE ORCHIds Environmental protection A diversity of habitats and 4,000m, forests are home to Masters Susanne span the alphabet from Economic exploitation of Bhutan’s Bhutan is one of the smallest countries orchid species that flower from spring BAcampe to Zeuxine. In the natural resources has been tempered in asia, occupying 384,394sq km. It through to autumn. In the subtropical capital city, Thimphu, it is easy and by legislation that prioritizes preserv- is located in the eastern Himalayas, at zone, between 150m and 2,000m, inexpensive to buy excellent, English ation. In fact, the Constitution of the the intersection of two biogeographic there are tropical and subtropical language wildlife guides, written Kingdom of Bhutan states in article realms, the warm Indo-Malayan and forests, and grasslands, and orchid by Bhutanese people able to bring 5.1 that ‘Every Bhutanese is a trustee the temperate Palearctic. -
Plastome Structure and Adaptive Evolution of Calanthe S.L. Species
Plastome structure and adaptive evolution of Calanthe s.l. species Yanqiong Chen, Hui Zhong, Yating Zhu, Yuanzhen Huang, Shasha Wu, Zhongjian Liu, Siren Lan and Junwen Zhai Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China Fujian Ornamental Plant Germplasm Resources Innovation & Engineering Application Research Center, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China ABSTRACT Calanthe s.l. is the most diverse group in the tribe Collabieae (Orchidaceae), which are pantropical in distribution. Illumina sequencing followed by de novo assembly was used in this study, and the plastid genetic information of Calanthe s.l. was used to investigate the adaptive evolution of this taxon. Herein, the complete plastome of five Calanthe s.l. species (Calanthe davidii, Styloglossum lyroglossa, Preptanthe rubens, Cephalantheropsis obcordata, and Phaius tankervilliae) were determined, and the two other published plastome sequences of Calanthe s.l. were added for comparative analyses to examine the evolutionary pattern of the plastome in the alliance. The seven plastomes ranged from 150,181 bp (C. delavayi) to 159,014 bp (C. davidii) in length and were all mapped as circular structures. Except for the three ndh genes (ndhC, ndhF, and ndhK ) lost in C. delavayi, the remaining six species contain identical gene orders and numbers (115 gene). Nucleotide diversity was detected across the plastomes, and we screened 14 mutational hotspot regions, including 12 non-coding regions and two gene regions. For the adaptive evolution investigation, three species showed positive selected genes compared with others, C. -
Orchid-List USA Autumn 2013.Pub
www.hengduanbiotech.com e-mail: [email protected] Orchid-List USA, Autumn 2013 (We attend the 2013 Fall Mid-America Orchid Show and Sale in Dayton , Ohio, October 19-20) Welcome at Hengduan Mts. Biotechnology! Hengduan Mts. Biotechnology is a German-Chinese company dedicated to the conservation and cul- tivation of native Chinese orchids. Our base is in Sichuan, Southwest China, in one of the biodiversity hotspots of the world, the Hengduan Mountains System (synonym Mountains of Southwest China), home to about 400 orchid species and the Giant Panda. Our laboratory and subtropical nursery in Chengdu, Sichuan’s capital, as well as the alpine nursery beds in North Sichuan are the tools for in vitro propagation and subsequent raising of a wide range of Chinese orchids, with our specialty be- ing slipper orchids (Cypripedium & Paphiopedilum, but also Phragmipedium and Mexipedium). We create also orchid hybrids and our modern laboratory is further engaged in the production of fruit crop plants and medicinal herbs. Hengduan Mts. Biotechnology is registered with the State Forestry Agency (SFA, the CITES authority of the Peoples Republic of China), as in-vitro propagation facility of CITES appendix I & II orchids and grower of these artificially produced plants. We legally export flasks as well as seedlings of all stages from recently deflasked to flowering size of Paphiopedilum, Cypripedium and many other types of or- chids to North America, the European Union, Japan and other countries. Because the paperwork for every single export involves 7 different governmental agencies with 12 steps, and requires at least 3 months (usually more), we only export once or twice a year to a given region. -
Distribution of Vascular Epiphytes Along a Tropical Elevational Gradient: Disentangling Abiotic and Biotic Determinants
www.nature.com/scientificreports OPEN Distribution of vascular epiphytes along a tropical elevational gradient: disentangling abiotic and Received: 23 June 2015 Accepted: 16 December 2015 biotic determinants Published: 22 January 2016 Yi Ding1, Guangfu Liu2, Runguo Zang1, Jian Zhang3,4, Xinghui Lu1 & Jihong Huang1 Epiphytic vascular plants are common species in humid tropical forests. Epiphytes are influenced by abiotic and biotic variables, but little is known about the relative importance of direct and indirect effects on epiphyte distribution. We surveyed 70 transects (10 m × 50 m) along an elevation gradient (180 m–1521 m) and sampled all vascular epiphytes and trees in a typical tropical forest on Hainan Island, south China. The direct and indirect effects of abiotic factors (climatic and edaphic) and tree community characteristics on epiphytes species diversity were examined. The abundance and richness of vascular epiphytes generally showed a unimodal curve with elevation and reached maximum value at ca. 1300 m. The species composition in transects from high elevation (above 1200 m) showed a more similar assemblage. Climate explained the most variation in epiphytes species diversity followed by tree community characteristics and soil features. Overall, climate (relative humidity) and tree community characteristics (tree size represented by basal area) had the strongest direct effects on epiphyte diversity while soil variables (soil water content and available phosphorus) mainly had indirect effects. Our study suggests that air humidity is the most important abiotic while stand basal area is the most important biotic determinants of epiphyte diversity along the tropical elevational gradient. Understanding the mechanisms of species distributions at different spatial scales remains a central question of community ecology and biogeography1. -
Phytogeographic Review of Vietnam and Adjacent Areas of Eastern Indochina L
KOMAROVIA (2003) 3: 1–83 Saint Petersburg Phytogeographic review of Vietnam and adjacent areas of Eastern Indochina L. V. Averyanov, Phan Ke Loc, Nguyen Tien Hiep, D. K. Harder Leonid V. Averyanov, Herbarium, Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov str. 2, Saint Petersburg 197376, Russia E-mail: [email protected], [email protected] Phan Ke Loc, Department of Botany, Viet Nam National University, Hanoi, Viet Nam. E-mail: [email protected] Nguyen Tien Hiep, Institute of Ecology and Biological Resources of the National Centre for Natural Sciences and Technology of Viet Nam, Nghia Do, Cau Giay, Hanoi, Viet Nam. E-mail: [email protected] Dan K. Harder, Arboretum, University of California Santa Cruz, 1156 High Street, Santa Cruz, California 95064, U.S.A. E-mail: [email protected] The main phytogeographic regions within the eastern part of the Indochinese Peninsula are delimited on the basis of analysis of recent literature on geology, geomorphology and climatology of the region, as well as numerous recent literature information on phytogeography, flora and vegetation. The following six phytogeographic regions (at the rank of floristic province) are distinguished and outlined within eastern Indochina: Sikang-Yunnan Province, South Chinese Province, North Indochinese Province, Central Annamese Province, South Annamese Province and South Indochinese Province. Short descriptions of these floristic units are given along with analysis of their floristic relationships. Special floristic analysis and consideration are given to the Orchidaceae as the largest well-studied representative of the Indochinese flora. 1. Background The Socialist Republic of Vietnam, comprising the largest area in the eastern part of the Indochinese Peninsula, is situated along the southeastern margin of the Peninsula. -
PC22 Doc. 22.1 Annex (In English Only / Únicamente En Inglés / Seulement En Anglais)
Original language: English PC22 Doc. 22.1 Annex (in English only / únicamente en inglés / seulement en anglais) Quick scan of Orchidaceae species in European commerce as components of cosmetic, food and medicinal products Prepared by Josef A. Brinckmann Sebastopol, California, 95472 USA Commissioned by Federal Food Safety and Veterinary Office FSVO CITES Management Authorithy of Switzerland and Lichtenstein 2014 PC22 Doc 22.1 – p. 1 Contents Abbreviations and Acronyms ........................................................................................................................ 7 Executive Summary ...................................................................................................................................... 8 Information about the Databases Used ...................................................................................................... 11 1. Anoectochilus formosanus .................................................................................................................. 13 1.1. Countries of origin ................................................................................................................. 13 1.2. Commercially traded forms ................................................................................................... 13 1.2.1. Anoectochilus Formosanus Cell Culture Extract (CosIng) ............................................ 13 1.2.2. Anoectochilus Formosanus Extract (CosIng) ................................................................ 13 1.3. Selected finished -
Indian Floriculture & Orchid Potential of North East India
ORCHIDS: COMMERCIAL PROSPECTS Courtesy: Dr. R. P. Medhi, Director National Research Centre for Orchids Pakyong, East Sikkim ORCHID FLOWER-UNIQUENESS INDIA FAVORING ORCHIDS Total land area of India - 329 million hectare. India is situated between 6o45’-37 o6’N latitude 68o7’-97o25’E longitudes. The distribution pattern reveals five major plant geographical regions viz., o North Eastern Himalayas o Peninsular region o Western Himalayas o Westerns Ghats and o Andaman and Nicobar group of Islands ORCHID RESOURCES OF INDIA (Number of Species-total) 1000 900 800 700 600 500 400 No. of species No. 300 200 100 0 Himalayan Eastern Peninsular Central Andaman mountain Himalayas India India & and region Gangetic Nicobar plains Islands Regions STATE WISE ORCHID DISTRIBUTION IN INDIA Name of the State Orchids (Number) Name of the Orchids (Number) State Genus Species Genus Species Andaman & Nicobar Group of Islands 59 117 Maharashtra 34 110 Andhra Pradesh 33 67 Manipur 66 251 Arunachal Pradesh 133 600 Meghalaya 104 352 Assam 75 191 Mizoram 74 246 Bihar (incl. Jharkhand) 36 100 Nagaland 63 241 Chhatisgarh 27 68 Orissa 48 129 Goa, Daman & Diu 18 29 Punjab 12 21 Gujrat 10 25 Rajasthan 6 10 Haryana 3 3 Sikkim 122 515 Himachal Pradesh 24 62 Tamil Nadu 67 199 Jammu & Kashmir 27 51 Tripura 34 48 Karnataka 52 177 Uttaranchal 72 237 Kerela 77 230 Uttar Pradesh 19 30 Madhya Pradesh (inc. Chhattisgarh) 34 89 ORCHID RESOURCES OF INDIA (Endemic) 6 15 13 10 76 88 N.E. INDIA E. INDIA W. INDIA PENINSULAR INDIA W. HIMALAYAS ANDAMANS ORCHID RESOURCES OF INDIA (Endangered) 52 34 25 105 44 N.E. -
A Review of CITES Appendices I and II Plant Species from Lao PDR
A Review of CITES Appendices I and II Plant Species From Lao PDR A report for IUCN Lao PDR by Philip Thomas, Mark Newman Bouakhaykhone Svengsuksa & Sounthone Ketphanh June 2006 A Review of CITES Appendices I and II Plant Species From Lao PDR A report for IUCN Lao PDR by Philip Thomas1 Dr Mark Newman1 Dr Bouakhaykhone Svengsuksa2 Mr Sounthone Ketphanh3 1 Royal Botanic Garden Edinburgh 2 National University of Lao PDR 3 Forest Research Center, National Agriculture and Forestry Research Institute, Lao PDR Supported by Darwin Initiative for the Survival of the Species Project 163-13-007 Cover illustration: Orchids and Cycads for sale near Gnommalat, Khammouane Province, Lao PDR, May 2006 (photo courtesy of Darwin Initiative) CONTENTS Contents Acronyms and Abbreviations used in this report Acknowledgements Summary _________________________________________________________________________ 1 Convention on International Trade in Endangered Species (CITES) - background ____________________________________________________________________ 1 Lao PDR and CITES ____________________________________________________________ 1 Review of Plant Species Listed Under CITES Appendix I and II ____________ 1 Results of the Review_______________________________________________________ 1 Comments _____________________________________________________________________ 3 1. CITES Listed Plants in Lao PDR ______________________________________________ 5 1.1 An Introduction to CITES and Appendices I, II and III_________________ 5 1.2 Current State of Knowledge of the