Hdsp, a Horizontally Transferred Gene Required for Social Behavior and Halotolerance in Salt-Tolerant Myxococcus Fulvus HW-1
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Two Independent Retrons with Highly Diverse Reverse Transcriptases In
Proc. Natl. Acad. Sci. USA Vol. 87, pp. 942-945, February 1990 Biochemistry Two independent retrons with highly diverse reverse transcriptases in Myxococcus xanthus (multicopy single-stranded DNA/2',5'-phosphodiester/codon usage/myxobacteria) SUMIKO INOUYE, PETER J. HERZER, AND MASAYORI INOUYE Department of Biochemistry, University of Medicine and Dentistry of New Jersey, Robert Wood Johnson Medical School, Piscataway, NJ 08854 Communicated by Russell F. Doolittle, November 27, 1989 (received for review September 29, 1989) ABSTRACT A reverse transcriptase (RT) was recently found that the Mx65 retron is highly diverse and independent found in Myxococcus xanthus, a Gram-negative soil bacterium. from the Mx162 retron and that RT associated with the Mx65 This RT has been shown to be associated with a chromosomal retron has only 47% identity with RT for the Mx162 retron. region designated a retron responsible for the synthesis of a peculiar extrachromosomal DNA called msDNA (multicopy single-stranded DNA). We demonstrate that M. xanthus con- MATERIALS AND METHODS tains two independent, unlinked retrons, one for the synthesis Materials. The clone of the 9.0-kilobase (kb) Pst I fragment of msDNA-Mxl62 and the other for msDNA-Mx65. The struc- containing the Mx65 retron was obtained (8). Restriction tural analysis of the retron for msDNA-Mx65 revealed that the enzymes were purchased from New England Biolabs and coding regions for msdRNA (msr) and msDNA (msd), and an Boehringer Mannheim. open reading frame (ORF) downstream of msr are arranged in A deletion mutant strain ofthe Mx162 retron, AmsSX, was the same manner as found for the Mx162 retron. -
The Ppz Protein Phosphatases Are Key Regulators of K+ and Ph Homeostasis: Implications for Salt Tolerance, Cell Wall Integrity and Cell Cycle Progression
The EMBO Journal Vol. 21 No. 5 pp. 920±929, 2002 The Ppz protein phosphatases are key regulators of K+ and pH homeostasis: implications for salt tolerance, cell wall integrity and cell cycle progression Lynne Yenush, Jose M.Mulet, but the mechanisms that regulate their activity to achieve JoaquõÂn ArinÄ o1 and Ramo n Serrano2 cation homeostasis are only starting to be elucidated (Serrano and Rodriguez-Navarro, 2001). Instituto de BiologõÂa Molecular y Celular de Plantas, Universidad PoliteÂcnica de Valencia-CSIC, Camino de Vera s/n, Several lines of evidence have indicated the existence of E-46022 Valencia and 1Departament de BioquõÂmica i Biologia a link between cation homeostasis and the cell cycle. Molecular, Fac. VeterinaÁria, Universitat AutoÁnoma de Barcelona, Speci®cally, previous studies have established a correl- Bellaterra 08193, Barcelona, Spain ation between cytosolic alkalinization and G1 progression 2Corresponding author in yeast (Gillies et al., 1981) and animal cells (Nuccitelli e-mail: [email protected] and Heiple, 1982). This increased intracellular pH may be either a regulatory signal (Perona and Serrano, 1988) or The yeast Ppz protein phosphatases and the Hal3p merely permissive for cell proliferation (Grinstein et al., inhibitory subunit are important determinants of salt 1989). More recently, in the eukaryotic model system tolerance, cell wall integrity and cell cycle progression. Saccharomyces cerevisiae, alterations in the expression of We present several lines of evidence showing that several genes encoding signal transduction proteins have these disparate phenotypes are connected by the fact been shown to affect both intracellular ion homeostasis that Ppz regulates K+ transport. First, salt tolerance, and cell cycle, again suggesting a possible link between cell wall integrity and cell cycle phenotypes of Ppz these two highly regulated cellular processes. -
Emended Descriptions of the Genera Myxococcus and Corallococcus, Typification of the Species Myxococcus Stipitatus and Myxococcu
International Journal of Systematic and Evolutionary Microbiology (2009), 59, 2122–2128 DOI 10.1099/ijs.0.003566-0 Emended descriptions of the genera Myxococcus and Corallococcus, typification of the species Myxococcus stipitatus and Myxococcus macrosporus and a proposal that they be represented by neotype strains. Request for an Opinion Elke Lang and Erko Stackebrandt Correspondence DSMZ – Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. Elke Lang 7B, 38124 Braunschweig Germany [email protected] The genus Corallococcus was separated from the genus Myxococcus mainly on the basis of differences in morphology and consistency of swarms and fruiting bodies of the respective members. Phylogenetic, chemotaxonomic and physiological evidence is presented here that underpins the separate status of these phylogenetically neighbouring genera. Emended descriptions of the two genera are presented. The data also suggest that the species Corallococcus macrosporus belongs to the genus Myxococcus. To the best of our knowledge, the type strains of the species Myxococcus macrosporus and Myxococcus stipitatus are not available from any established culture collection or any other source. A Request for an Opinion is made regarding the proposal that strain Cc m8 (5DSM 14697 5CIP 109128) be formally recognized as the neotype strain for the species Myxococcus macrosporus, replacing the designated type strain Windsor M271T, and that strain Mx s8 (5DSM 14675 5JCM 12634) be formally recognized as the neotype strain for the species Myxococcus stipitatus, replacing the designated type strain Windsor M78T. Introduction The genus Myxococcus was described by Thaxter (1892), Within the family Myxococcaceae, delineation of genera, who first recognized that the myxobacteria, formerly descriptions of species and affiliations of strains to species assigned to the fungi, were in fact bacteria. -
Pores, Signals and Programmed Cell Death In
PORES, SIGNALS AND PROGRAMMED CELL DEATH IN MYXOCOCCUS XANTHUS by SWAPNA BHAT (Under the Direction of Lawrence J. Shimkets) ABSTRACT Fruiting body development in the δ-Proteobacterium Myxococcus xanthus is governed by cell-cell signaling. The identities of many signals and their pores remain unknown. The first study focuses on identification of outer membrane (OM) β-barrel and lipoproteins by bioinformatic and proteomic analyses. A bioinformatic strategy was developed that involved step-wise elimination of cytoplasmic, lipoproteins and inner membrane (IM) protein sequences using Signal P, Lipo P and TMHMM programs, respectively. β-barrel proteins were identified from the remaining sequences using the most accurate β-barrel protein were identified in the proteome of which 54 were found by LC-MS/MS analysis of vegetative OM vesicles. One β-barrel protein, Oar, was found to be essential for intercellular C-signaling, which directs aggregation and sporulation. An oar mutant produces CsgA, yet fails to stimulate ∆csgA development when mixed together. oar cells form unusual shapes, alleviated in a csgA oar double mutant, suggesting that C-signal accumulation is detrimental. To identify OM lipoproteins, N- terminal sorting signals that direct lipoproteins to various subcellular locations were identified. Protein sequence analysis of lipoproteins followed by site directed mutagenesis and immuno transmission electron microscopy of the ECM lipoprotein FibA revealed that +7 alanine is the extracellular matrix sorting signal. The second study focuses on lipid bodies and their role in E-signaling during development. Lipid bodies are triacylglycerol storage organelles. This work shows that lipid bodies are synthesiszed early in development, possibly from membrane phospholipids. -
The Halotolerance and Phylogeny of Cyanobacteria with Tightly Coiled Trichomes (Spirulina Turpin) and the Description of Halospirulina Tapeticola Gen
International Journal of Systematic and Evolutionary Microbiology (2000), 50, 1265–1277 Printed in Great Britain The halotolerance and phylogeny of cyanobacteria with tightly coiled trichomes (Spirulina Turpin) and the description of Halospirulina tapeticola gen. nov., sp. nov. Ulrich Nu$ bel,† Ferran Garcia-Pichel‡ and Gerard Muyzer§ Author for correspondence: Ulrich Nu$ bel. Tel: j1 406 994 3412. Fax: j1 406 994 4926. e-mail: unuebel!montana.edu Max-Planck-Institute for The morphologies, halotolerances, temperature requirements, pigment Marine Microbiology, compositions and 16S rRNA gene sequences of five culture collection strains Bremen, Germany and six novel isolates of cyanobacteria with helical, tightly coiled trichomes were investigated. All strains were very similar morphologically and could be assigned to the genus Spirulina (or section Euspirulina sensu Geitler), according to traditional classification. However, the isolates showed significantly different requirements for salinity and temperature, which were in accordance with their respective environmental origins. The genetic divergence among the strains investigated was large. The results indicate the drastic underestimation of the physiological and phylogenetic diversity of these cyanobacteria by the current morphology-based classification and the clear need for new taxa. Three of the isolates originated from hypersaline waters and were similar with respect to their high halotolerance, broad euryhalinity and elevated temperature tolerance. By phylogenetic analyses, they were -
Bioessays, 33(1):43-51 (2011)
Prospects & Overviews Review essays The phage-host arms race: Shaping the evolution of microbes Adi Stern and Rotem Sorekà Bacteria, the most abundant organisms on the planet, Introduction are outnumbered by a factor of 10 to 1 by phages that Phage-host relationships have been studied intensively since infect them. Faced with the rapid evolution and turnover the early days of molecular biology. In the late 1970s, while of phage particles, bacteria have evolved various mech- viruses were found to be ubiquitous, it was assumed that they anisms to evade phage infection and killing, leading to were present in relatively low numbers and that their effect on an evolutionary arms race. The extensive co-evolution of microbial communities was low [1]. With the increasing avail- both phage and host has resulted in considerable diver- ability of new molecular techniques that allow studies of microbial communities without the need to culture them sity on the part of both bacterial and phage defensive [2], it is now realized that viruses greatly outnumber bacteria and offensive strategies. Here, we discuss the unique in the ocean and other environments, with viral numbers and common features of phage resistance mechanisms (107–108/mL) often 10-fold larger than bacterial cell counts and their role in global biodiversity. The commonalities (106/mL) [3–5]. Thus, bacteria are confronted with a constant between defense mechanisms suggest avenues for the threat of phage predation. discovery of novel forms of these mechanisms based on The Red Queen hypothesis (Box 1) posits that competitive environmental interactions, such as those displayed by hosts their evolutionary traits. -
Osmoregulatory Physiology and Its Evolution in the Threespine Stickleback (Gasterosteus Aculeatus) Jeffrey N
University of Connecticut OpenCommons@UConn Doctoral Dissertations University of Connecticut Graduate School 8-24-2016 Osmoregulatory Physiology and its Evolution in the Threespine Stickleback (Gasterosteus aculeatus) Jeffrey N. Divino University of Connecticut - Storrs, [email protected] Follow this and additional works at: https://opencommons.uconn.edu/dissertations Recommended Citation Divino, Jeffrey N., "Osmoregulatory Physiology and its Evolution in the Threespine Stickleback (Gasterosteus aculeatus)" (2016). Doctoral Dissertations. 1217. https://opencommons.uconn.edu/dissertations/1217 Osmoregulatory Physiology and its Evolution in the Threespine Stickleback (Gasterosteus aculeatus) Jeffrey Nicholas Divino, PhD University of Connecticut, 2016 Maintaining ion balance in environments of changing salinity is one of the greatest physiological challenges facing aquatic organisms and by comparing populations inhabiting different salinity regimes, we can learn how physiological plasticity evolves in response to local osmotic stress. I characterized the evolution of osmoregulatory responses in representative marine, anadromous, and freshwater (FW) populations of Threespine Stickleback (Gasterosteus aculeatus) by comparing survival and physiological measures in F1-generation fish following salinity challenge. Juveniles from a population landlocked for ~10,000 years displayed ontogenetically-delayed seawater (SW) tolerance, a lower maximum salinity threshold, and did not upregulate the Na+/K+-ATPase (NKA) ion transporter as much as marine counterparts (Chapter 1). Stickleback also responded to salinity stress by remodeling their gill epithelium: I observed a higher density of ionoregulatory cells when juveniles were subjected to both low and high salinities, and the latter treatment induced strong upregulation of ion secretory cells (Chapter 2). Finally, I examined the speed at which osmoregulatory plasticity evolves by comparing halotolerance between an anadromous population and descendants that had been FW-restricted for only two generations (Chapter 3). -
Bioprospecting for Novel Halophilic and Halotolerant Sources of Hydrolytic Enzymes in Brackish, Saline and Hypersaline Lakes of Romania
microorganisms Article Bioprospecting for Novel Halophilic and Halotolerant Sources of Hydrolytic Enzymes in Brackish, Saline and Hypersaline Lakes of Romania Robert Ruginescu 1,*, Ioana Gomoiu 1, Octavian Popescu 1,2, Roxana Cojoc 1, Simona Neagu 1, Ioana Lucaci 1, Costin Batrinescu-Moteau 1 and Madalin Enache 1 1 Department of Microbiology, Institute of Biology Bucharest of the Romanian Academy, 296 Splaiul Independentei, P.O. Box 56-53, 060031 Bucharest, Romania; [email protected] (I.G.); [email protected] (O.P.); [email protected] (R.C.); [email protected] (S.N.); [email protected] (I.L.); [email protected] (C.B.-M.); [email protected] (M.E.) 2 Molecular Biology Center, Institute of Interdisciplinary Research in Bio-Nano-Sciences, Babes-Bolyai-University, 42 Treboniu Laurian St., 400271 Cluj-Napoca, Romania * Correspondence: [email protected] Received: 4 November 2020; Accepted: 30 November 2020; Published: 30 November 2020 Abstract: Halophilic and halotolerant microorganisms represent promising sources of salt-tolerant enzymes that could be used in various biotechnological processes where high salt concentrations would otherwise inhibit enzymatic transformations. Considering the current need for more efficient biocatalysts, the present study aimed to explore the microbial diversity of five under- or uninvestigated salty lakes in Romania for novel sources of hydrolytic enzymes. Bacteria, archaea and fungi were obtained by culture-based approaches and screened for the production of six hydrolases (protease, lipase, amylase, cellulase, xylanase and pectinase) using agar plate-based assays. Moreover, the phylogeny of bacterial and archaeal isolates was studied through molecular methods. From a total of 244 microbial isolates, 182 (74.6%) were represented by bacteria, 22 (9%) by archaea, and 40 (16.4%) by fungi. -
Novel Myxobacteria As a Potential Source of Natural Products and Description of Inter-Species Nature of C-Signal
Novel myxobacteria as a potential source of natural products and description of inter-species nature of C-signal Dissertation zur Erlangung des Grades des Doktors der Naturwissenschaften der Naturwissenschaftlich-Technischen Fakultät III Chemie, Pharmazie, Bio- und Werkstoffwissenschaften der Universität des Saarlandes von Ram Prasad Awal (M. Sc. in Medical Microbiology) Saarbrücken 2016 Tag des Kolloquiums: ......19.12.2016....................................... Dekan: ......Prof. Dr. Guido Kickelbick.............. Berichterstatter: ......Prof. Dr. Rolf Müller...................... ......Prof. Dr. Manfred J. Schmitt........... ............................................................... Vositz: ......Prof. Dr. Uli Kazmaier..................... Akad. Mitarbeiter: ......Dr. Jessica Stolzenberger.................. iii Diese Arbeit entstand unter der Anleitung von Prof. Dr. Rolf Müller in der Fachrichtung 8.2, Pharmazeutische Biotechnologie der Naturwissenschaftlich-Technischen Fakultät III der Universität des Saarlandes von Oktober 2012 bis September 2016. iv Acknowledgement Above all, I would like to express my special appreciation and thanks to my advisor Professor Dr. Rolf Müller. It has been an honor to be his Ph.D. student and work in his esteemed laboratory. I appreciate for his supervision, inspiration and for allowing me to grow as a research scientist. Your guidance on both research as well as on my career have been invaluable. I would also like to thank Professor Dr. Manfred J. Schmitt for his scientific support and suggestions to my research work. I am thankful for my funding sources that made my Ph.D. work possible. I was funded by Deutscher Akademischer Austauschdienst (DAAD) for 3 and half years and later on by Helmholtz-Institute. Many thanks to my co-advisors: Dr. Carsten Volz, who supported and guided me through the challenging research and Dr. Ronald Garcia for introducing me to the wonderful world of myxobacteria. -
Endogenous Lipid Chemoattractants and Extracellular Matrix Proteins
ENDOGENOUS LIPID CHEMOATTRACTANTS AND EXTRACELLULAR MATRIX PROTEINS INVOLVED IN DEVELOPMENT OF MYXOCOCCUS XANTHUS by PATRICK DAVID CURTIS (Under the Direction of Lawrence J. Shimkets) ABSTRACT The soil bacterium Myxococcus xanthus is a model organism to study multicellular development and biofilm formation. When starved, swarms of M. xanthus cells aggregate into a multicellular architecture called a fruiting body, wherein cells differentiate into metabolically dormant myxospores. Fruiting body formation requires directed cell movement and production of an extracellular matrix (ECM) to facilitate cell-contact dependent motility (Social motility), and biofilm formation. M. xanthus displays chemotaxis towards phospholipids derived from its membrane containing the rare fatty acid 16:1ω5c. This study demonstrates that 16:1ω5c is primarily found at the sn-1 position within the major membrane phospholipid, phosphatidylethanolamine (PE), which is contrary to the established dogma of fatty acid localization in Gram-negative bacteria. Additionally, 16:1ω5c at the sn-1 position stimulates chemotaxis stronger than 16:1ω5c located at the sn-2 position. These results suggest that the endogenous lipid chemoattractants may serve as a self-recognition system. Chemotaxis towards a self-recognition marker could facilitate movement of cells into aggregation centers. Lipid chemotaxis is dependent on the ECM-associated zinc metalloprotease FibA, suggesting that the ECM may harbor protein components of extracellular signaling pathways. Protein components of prokaryotic biofilms are largely unexplored. Twenty one putative ECM-associated proteins were identified, including FibA. Many are novel proteins. A large portion of the putative ECM proteins have lipoprotein secretion signals, unusual for extracellular proteins. An MXAN4860 pilA mutant displays a 24 hour delay in fruiting body formation and sporulation compared to the pilA parent, indicating that MXAN4860 functions in the FibA-mediated developmental pathway previously described. -
Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant Acidihalobacter Genus
G C A T T A C G G C A T genes Article Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant Acidihalobacter Genus Himel Nahreen Khaleque 1,2, Homayoun Fathollazadeh 1 , Carolina González 3,4 , Raihan Shafique 1, Anna H. Kaksonen 2 , David S. Holmes 3,4,5 and Elizabeth L.J. Watkin 1,* 1 School of Pharmacy and Biomedical Sciences, Curtin University, Perth 6845, Australia; [email protected] (H.N.K.); [email protected] (H.F.); raihan.shafi[email protected] (R.S.) 2 CSIRO Land and Water, Floreat 6014, Australia; [email protected] 3 Center for Bioinformatics and Genome Biology, Fundacion Ciencia y Vida, Santiago 7750000, Chile; [email protected] (C.G.); [email protected] (D.S.H.) 4 Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago 8580000, Chile 5 Universidad San Sebastian, Santiago 8320000, Chile * Correspondence: [email protected]; Tel.: +61-8926-629-55 Received: 28 September 2020; Accepted: 22 November 2020; Published: 24 November 2020 Abstract: Microorganisms used for the biohydrometallurgical extraction of metals from minerals must be able to survive high levels of metal and oxidative stress found in bioleaching environments. The Acidihalobacter genus consists of four species of halotolerant, iron–sulfur-oxidizing acidophiles that are unique in their ability to tolerate chloride and acid stress while simultaneously bioleaching minerals. This paper uses bioinformatic tools to predict the genes and mechanisms used by Acidihalobacter members in their defense against a wide range of metals and oxidative stress. Analysis revealed the presence of multiple conserved mechanisms of metal tolerance. -
Osmoregulation and Other Survival Strategies Deployed by The
Pakistan Journal of Marine Sciences, Vol.1(1), 73-86, 1992 REVIEW ARTICLE COPING WITH EXCESS SALT IN THEIR GROWTH ENVI RONMENTS: OSMOREGULATION AND OTHER SURVIVAL STRA1EGIES DEPLOYED BY THE MANGROVES. Saiyed I. Ahmed School of Oceanography, University of Washington, Seattle, WA 98195, U.S.A. INTRODUCI'ION Mangroves are defined here as a collection of woody plants and the associated fauna and flora that use a coastal depositional environment. Mangrove forests consist of plant communities that belong to many different genera and families that are not always related phylogenetically. However, they share some common characteristics based upon physiological, reproductive and morphological adaptations that enable them to grow in a broad range of coastal environments in the tropical and subtropical areas of the world. By this definition, they occupy the interface between the land and the sea (Walsh, 1974). Throughout the world, approximately 54 species of plants belonging to about 20 genera in 16 families have been recognized as belonging to the mangroves (Tomlinson, 1986). The mangrove forests of Pakistan consist of 8 species in the Indus River delta region and 5 species along the Makran Coast. However, the species of the genusAvicennia are the dominant members in both these areas and represent 90-95% of the total mangrove vegetation (Snedaker, 1984). Jennings and Bird (1967) have described the six most important geomorphological characteristics that affect estuaries, and they are: (1) aridity, (2) wave energy, (3) tidal conditions, ( 4) sedimentation, (5) mineralogy and (6) neotectonic effects. All of these directly or indirectly affect the establishment of mangroves. Walsh (1974) and Chapman (1975, 1977) have described in all seven characteristics that may be consid ered as essential requisites for mangroves on a world-wide basis; (1) air temperature (within a restricted range), (2) mud substrate, (3) protection, (4) salt water, (5) tidal range, (6) ocean currents, and (7) shallow shores.