Qualitative and Quantitative Assessment of the "Dangerous
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Chorioméningite Lymphocytaire, Tuberculose, Échinococcose…
LES ZOONOSES INFECTIEUSES Juin 2021 Ce document vous est offert par Boehringer Ingelheim Ce fascicule fait partie de l’ensemble des documents polycopiés rédigés de manière concertée par des enseignants de maladies contagieuses des quatre Ecoles nationales vétérinaires françaises, à l’usage des étudiants vétérinaires. Sa rédaction et sa mise à jour régulière ont été sous la responsabilité de B. Toma jusqu’en 2006, avec la contribution, pour les mises à jour, de : G. André-Fontaine, M. Artois, J.C. Augustin, S. Bastian, J.J. Bénet, O. Cerf, B. Dufour, M. Eloit, N. Haddad, A. Lacheretz, D.P. Picavet, M. Prave La mise à jour est réalisée depuis 2007 par N. Haddad La citation bibliographique de ce fascicule doit être faite de la manière suivante : Haddad N. et al. Les zoonoses infectieuses, Polycopié des Unités de maladies réglementées des Ecoles vétérinaires françaises, Boehringer Ingelheim (Lyon), juin 2021, 217 p. Nous remercions Boehringer Ingelheim qui, depuis de nombreuses années, finance et assure la réalisation de ce polycopié. * 1 2 OBJECTIFS D’APPRENTISSAGE Rang A (libellé souligné) et rang B A l’issue de cet enseignement, les étudiants devront être capables : • de répondre à des questions posées par une personne (propriétaire d'animaux, médecin...) relatives à la nature des principales maladies bactériennes et virales transmissibles à l'Homme lors de morsure par un carnivore . • de répondre à des questions posées par une personne (propriétaire d'animaux, médecin...) relatives à l'évolution de la maladie chez l'Homme, les modalités de la transmission et de la prévention des principales maladies bactériennes et virales transmissibles à l'Homme à partir des carnivores domestiques et les grandes lignes de leur prophylaxie. -
Morbidity and Mortality Weekly Report Weekly March 20, 2009 / Vol
Morbidity and Mortality Weekly Report www.cdc.gov/mmwr Weekly March 20, 2009 / Vol. 58 / No. 10 Trends in Tuberculosis — World TB Day — March 24, 2009 United States, 2008 World TB Day is observed each year on March 24 to commemorate the date in 1882 when Dr. Robert Koch In 2008, a total of 12,898 incident tuberculosis (TB) cases announced the discovery of Mycobacterium tuberculosis, the were reported in the United States; the TB rate declined 3.8% bacterium that causes tuberculosis (TB). Worldwide, TB from 2007 to 4.2 cases per 100,000 population, the lowest remains one of the leading causes of death from infectious rate recorded since national reporting began in 1953. This disease. An estimated 2 billion persons are infected with report summarizes provisional 2008 data from the National M. tuberculosis (1). In 2006, approximately 9.2 million TB Surveillance System and describes trends since 1993. persons became ill from TB, and 1.7 million died from Despite this overall improvement, progress has slowed in the disease (1). World TB Day provides an opportunity recent years; the average annual percentage decline in the TB for TB programs, nongovernmental organizations, and rate decreased from 7.3% per year during 1993–2000 to 3.8% other partners to describe problems and solutions related during 2000–2008.* Foreign-born persons and racial/ethnic to the TB pandemic and to support worldwide TB minorities continued to bear a disproportionate burden of TB control efforts. The U.S. theme for this year’s observance disease in the United States. In 2008, the TB rate in foreign- is Partnerships for TB Elimination. -
Diapositiva 1
Simultaneous outbreak of Dengue and Chikungunya in Al Hodayda, Yemen (epidemiological and phylogenetic findings) Giovanni Rezza1, Gamal El-Sawaf2, Giovanni Faggioni3, Fenicia Vescio1, Ranya Al Ameri4, Riccardo De Santis3, Ghada Helaly2, Alice Pomponi3, Alessandra Lo Presti1, Dalia Metwally2, Massimo Fantini5, FV, Hussein Qadi4, Massimo Ciccozzi1, Florigio Lista3 1Department of lnfectious, Parasitic and lmmunomediated Diseases, Istituto Superiore di Sanità, Roma, Italy; 2 Medical Research lnstitute- Alexandria University, Egypt; 3Histology and Molecular Biology Section, Army Medical an d Veterinary Research Center, Roma, ltaly; 4 University of Sana’a, Republic of Yemen; 5Department of Clinical Sciences and Translational Medicine, University of Rome "Tor Vergata", Roma, ltaly * * Background Fig.1 * * Yemen, which is located in the southwestern end of the Arabian Peninsula, is one of the * countries most affected by recurrent epidemics of dengue. * I We conducted a study on individuals hospitalized with dengue-like syndrome in Al Hodayda, with the aim of identifying viral agents responsible of febrile illness (i.e., dengue [DENV], chikungunya [CHIKV], Rift Valley [RVFV] and hemorrhagic fever virus Alkhurma). * * * Methods * The study site was represented by five hospital centers located in Al-Hodayda, United Republic * of Yemen. Patients were recruited in 2011 and 2012. Serum samples were analysed by ELISA * for the presence of IgM antibody against DENV and CHIKV by using commercial assays. Nucleic * acids were extracted by automated method and analyzed by using specific PCR for the Fig. 2 presence of sequences of DENV, RVF virus, Alkhurma virus and CHIKV. To confirm the results, 15 DENV positive sera underwent specific NS1 gene amplification and sequencing reaction. Similarly, CHIKV positive sera were thoroughly investigated by amplification and sequencing Conclusions the gene encoding the E1 protein. -
Bacterial Ecology of Abattoir Wastewater Treated by an Anaerobic
Bacterial ecology of abattoir wastewater treated by an anaerobic digestor Linda Jabari, Hana Gannoun, Eltaief Khelifi, Jean-Luc Cayol, Jean-Jacques Godon, Moktar Hamdi, Marie-Laure Fardeau To cite this version: Linda Jabari, Hana Gannoun, Eltaief Khelifi, Jean-Luc Cayol, Jean-Jacques Godon, et al.. Bacterial ecology of abattoir wastewater treated by an anaerobic digestor. Brazilian Journal of Microbiology, Sociedade Brasileira de Microbiologia, 2016, 47 (1), pp.73-84. 10.1016/j.bjm.2015.11.029. hal- 02633155 HAL Id: hal-02633155 https://hal.inrae.fr/hal-02633155 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. b r a z i l i a n j o u r n a l o f m i c r o b i o l o g y 4 7 (2 0 1 6) 73–84 h ttp://www.bjmicrobiol.com.br/ Environmental Microbiology Bacterial ecology of abattoir wastewater treated by an anaerobic digestor a,b a,c a b Linda Jabari , Hana Gannoun , Eltaief Khelifi , Jean-Luc Cayol , d a b,∗ Jean-Jacques Godon , Moktar Hamdi , Marie-Laure Fardeau a Université de Carthage, Laboratoire d’Ecologie et de Technologie Microbienne, Institut National des Sciences Appliquées et de Technologie (INSAT), 2 Boulevard de la terre, B.P. -
An Assay Redesign and Evaluation
Deficiencies in the current assays for the detection and identification of DNA viruses of carp: an assay redesign and evaluation. David Stone1, Peng Jia2 and Hong Liu2 1Cefas Weymouth Laboratory, UK 2Shenzhen Exit & Entry Inspection and Quarantine Bureau, People's Republic of China. World Class Science for the Marine and Freshwater Environment Overview • BREXIT • Cyprinivirus-specific primers • Failures in CyHV-3 detection using the Gilad qPCR assay • Design and initial evaluation of a CyHV-3 pol qPCR assay • CEV • Current PCR based assays • Failures in the Cefas conventional PCR assay • Design and initial evaluation of a modified nested PCR assay • Work to be done KHV (Cyprinid herpesvirus 3) • Large DNA virus (295 kbp genome) – of the Alloherpesviridae family in the order Herpesvirales • CyHV-3 (Koi herpesvirus - KHV) is the type species of the Cyprinivirus genus -also contains Cyprinid herpesviruses 1 & 2 and Anguillid herpesvirus • Disease affects Common carp (Cyprinus carpio), including ornamental koi carp and varieties and hybrids such as mirror and ghost carp. Goldfish (Carassius auratus) x common carp hybrids also have low susceptibility to CyHV-3 infection Cyprinivirus- specific DNA polymerase primers Nested conventional PCR assay based on CyHV 1-3 DNA polymerase sequences • Analytical sensitivity of 1-10 copies/reaction (~DNA from 0.25mg tissue) • Assay accredited to ISO 17025 Initially run in parallel to the TK primers recommended by the OIE. In the UK the assay was adopted as the primary assay for confirmation of disease outbreaks -
2012 Case Definitions Infectious Disease
Arizona Department of Health Services Case Definitions for Reportable Communicable Morbidities 2012 TABLE OF CONTENTS Definition of Terms Used in Case Classification .......................................................................................................... 6 Definition of Bi-national Case ............................................................................................................................................. 7 ------------------------------------------------------------------------------------------------------- ............................................... 7 AMEBIASIS ............................................................................................................................................................................. 8 ANTHRAX (β) ......................................................................................................................................................................... 9 ASEPTIC MENINGITIS (viral) ......................................................................................................................................... 11 BASIDIOBOLOMYCOSIS ................................................................................................................................................. 12 BOTULISM, FOODBORNE (β) ....................................................................................................................................... 13 BOTULISM, INFANT (β) ................................................................................................................................................... -
Investigating the Role of Host TTR-Rbps During SFV4 and MHV-68 Infection
Investigating the role of host TTR-RBPs during SFV4 and MHV-68 infection Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor in Philosophy by Jamie Casswell October 2019 Contents Figure Contents Page……………………………………………………………………………………7 Table Contents Page…………………………………………………………………………………….9 Acknowledgements……………………………………………………………………………………10 Abbreviations…………………………………………………………………………………………….11 Abstract……………………………………………………………………………………………………..17 1. Chapter 1 Introduction……………………………………………………………………………19 1.1 DNA and RNA viruses ............................................................................. 20 1.2 Taxonomy of eukaryotic viruses ............................................................. 21 1.3 Arboviruses ............................................................................................ 22 1.4 Togaviridae ............................................................................................ 22 1.4.1 Alphaviruses ............................................................................................................................. 23 1.4.1.1 Semliki Forest Virus ........................................................................................................... 25 1.4.1.2 Alphavirus virion structure and structural proteins ......................................................... 26 1.4.1.3 Alphavirus non-structural proteins ................................................................................... 29 1.4.1.4 Alphavirus genome organisation -
WO 2018/064165 A2 (.Pdf)
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2018/064165 A2 05 April 2018 (05.04.2018) W !P O PCT (51) International Patent Classification: Published: A61K 35/74 (20 15.0 1) C12N 1/21 (2006 .01) — without international search report and to be republished (21) International Application Number: upon receipt of that report (Rule 48.2(g)) PCT/US2017/053717 — with sequence listing part of description (Rule 5.2(a)) (22) International Filing Date: 27 September 2017 (27.09.2017) (25) Filing Language: English (26) Publication Langi English (30) Priority Data: 62/400,372 27 September 2016 (27.09.2016) US 62/508,885 19 May 2017 (19.05.2017) US 62/557,566 12 September 2017 (12.09.2017) US (71) Applicant: BOARD OF REGENTS, THE UNIVERSI¬ TY OF TEXAS SYSTEM [US/US]; 210 West 7th St., Austin, TX 78701 (US). (72) Inventors: WARGO, Jennifer; 1814 Bissonnet St., Hous ton, TX 77005 (US). GOPALAKRISHNAN, Vanch- eswaran; 7900 Cambridge, Apt. 10-lb, Houston, TX 77054 (US). (74) Agent: BYRD, Marshall, P.; Parker Highlander PLLC, 1120 S. Capital Of Texas Highway, Bldg. One, Suite 200, Austin, TX 78746 (US). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. -
Genetic and Pathogenic Characterisation of 11 Avian
www.nature.com/scientificreports OPEN Genetic and pathogenic characterisation of 11 avian reovirus isolates from northern Received: 01 July 2016 Accepted: 26 September 2016 China suggests continued evolution Published: 18 October 2016 of virulence Li Zhong*, Li Gao*, Yongzhen Liu, Kai Li, Miao Wang, Xiaole Qi, Yulong Gao & Xiaomei Wang Avian reovirus (ARV) infections characterised by severe arthritis, tenosynovitis, pericarditis, and depressed growth have become increasingly frequent in recent years. In this study, we isolated and identified 11 ARV field strains from chickens with viral arthritis and reduced growth in northern China. Comparative analysis of the σC nucleotide and amino acid sequences demonstrated that all isolates, except LN05 and JS01, were closely related to ARV S1133 and clustered in the first genetic lineage. LN05 and JS01 strains were clustered in the third lineage with the ARV 138 strain. Using S1133 as a reference, five isolates were selected to infect specific-pathogen-free chickens, and we found that the recent isolated Chinese ARV strains had higher replication ability in vivo and caused enhanced mortality than the S1133 strain. These findings suggest that the pathogenicity of Chinese ARVs has been changing in recent years and disease control may become more difficult. This study provides genetic and pathogenic characterisations of ARV strains isolated in northern China and calls for a sustained surveillance of ARV infection in China in order to support a better prevention and control of the disease. Avian reoviruses (ARVs) are important poultry pathogens that cause considerable economic losses in poultry husbandry1. ARVs were first described and isolated as the pathogenic agents responsible for tenosynovitis in young chickens in 19592. -
Construção E Aplicação De Hmms De Perfil Para a Detecção E Classificação De Vírus
UNIVERSIDADE DE SÃO PAULO PROGRAMA INTERUNIDADES DE PÓS-GRADUAÇÃO EM BIOINFORMÁTICA Construção e Aplicação de HMMs de Perfil para a Detecção e Classificação de Vírus Miriã Nunes Guimarães SÃO PAULO 2019 Construção e Aplicação de HMMs de Perfil para a Detecção e Classificação de Vírus Miriã Nunes Guimarães Dissertação apresentada à Universidade de São Paulo, como parte das exigências do Programa de Pós-Graduação Interunidades em Bioinformática, para obtenção do título de Mestre em Ciências. Área de Concentração: Bioinformática Orientador: Prof. Dr. Arthur Gruber SÃO PAULO 2019 “Na vida, não existe nada a temer, mas a entender.” Marie Curie Agradecimentos Ao Professor Arthur Gruber pela oportunidade desde o início como estagiária no laboratório, pela orientação neste período de aprendizado no mestrado e por fornecer um ambiente de trabalho favorável. À aluna de doutorado Liliane Santana Oliveira que aguentou todas as minhas amolações diárias no laboratório pelo Hangouts, por dúvidas que eram erros meus em comandos de execução, pela paciência, pela amizade, pela companhia nos bandejões da faculdade com cardápio glutenfree que nem sempre eram tão bons assim. À aluna de mestrado Irina Yuri Kawashima que estava comigo no laboratório diariamente, pelas várias discussões sobre o mundo dos vírus e de conhecimentos da bioinformática, pelas ferramentas para facilitar o andamento do projeto, por todas guloseimas glutenfree que seria impossível eu não agradecer pois tenho ciência que não vou encontrar outra amiga masterchef assim. À Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) pelo financiamento durante estes 24 meses de mestrado. Aos meus pais pelo carinho e preocupação comigo durante estes 24 anos, pelo incentivo aos estudos e pelo apoio para eu me manter a uma distância de quase 400km de pura saudade. -
UCC Library and UCC Researchers Have Made This Item Openly Available
UCC Library and UCC researchers have made this item openly available. Please let us know how this has helped you. Thanks! Title Dairybiota: analysing the microbiota of the dairy chain using next generation sequencing Author(s) Doyle, Conor J. Publication date 2017 Original citation Doyle, C. 2017. Dairybiota: analysing the microbiota of the dairy chain using next generation sequencing. PhD Thesis, University College Cork. Type of publication Doctoral thesis Rights © 2017, Conor Doyle. http://creativecommons.org/licenses/by-nc-nd/3.0/ Embargo information No embargo required Item downloaded http://hdl.handle.net/10468/5524 from Downloaded on 2021-10-09T03:33:35Z Dairybiota: analysing the microbiota of the dairy chain using next generation sequencing A thesis presented to the National University of Ireland for the degree of Doctor of Philosophy By Conor Doyle B.Sc Teagasc Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland School of Microbiology, University College Cork, Cork, Ireland 2017 Research supervisors: Dr. Paul Cotter and Professor Paul O’Toole i “And all this science, I don’t understand. It’s just my job five days a week” Rocket man “No number of sightings of white swans can prove the theory that all swans are white. The sighting of just one black one may disprove it.” Karl Popper ii Table of Contents Declaration .........................................................................................................................................x Abstract ..............................................................................................................................................xi -
Supporting Information
Supporting Information Fujimura et al. 10.1073/pnas.1310750111 SI Materials and Methods respectively. Photomicrographs were captured using a Zeiss Axio House Dust Collection. Dust from homes with or without dogs was Imager Z1 and AxioVision 4.8 software (Zeiss). collected using a sterile fabric filter sock inserted into a sterile vacuum nozzle immediately before vacuuming a 3′ × 3′ area for mRNA Extraction, Reverse Transcription, and RT-PCR. mRNA was 3 min. The sock was removed from the vacuum, the collected isolated from ground lung tissue using TRIzol reagent (Invi- μ trogen) or the RNeasy Mini kit (Qiagen) according to manu- dust weighed and sieved through a 300- m sieve to remove large ’ μ debris from the sample. Comparable sieved samples have pre- facturer s instructions. A total of 5 g of RNA per sample was reverse transcribed using murine leukemia virus RTase (Applied viously been used successfully to profile microbial communities Biosystems). Expression of relevant genes was analyzed with present in house dust (1, 2). Dust samples were subsequently TaqMan gene expression assays (Applied Biosystems) using an divided into 25- or 6.25-mg fractions for dog (D)- or no-pet ABI Prism 7500 Sequence Detection System (Applied Bio- (NP)-associated houses, respectively, each stored in a sterile − systems). Gene expression was normalized to GAPDH and ex- 5-mL tube at 20 °C until used for murine supplementation. pressed as fold change over expression in control mice. Murine Models. Cockroach allergen model. BALB/c were purchased Culture and Stimulation of Lymph Node Cells. Mediastinal lymph from The Jackson Laboratory.