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Desulfuribacillus Alkaliarsenatis Gen. Nov. Sp. Nov., a Deep-Lineage
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Extremophiles (2012) 16:597–605 DOI 10.1007/s00792-012-0459-7 ORIGINAL PAPER Desulfuribacillus alkaliarsenatis gen. nov. sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes D. Y. Sorokin • T. P. Tourova • M. V. Sukhacheva • G. Muyzer Received: 10 February 2012 / Accepted: 3 May 2012 / Published online: 24 May 2012 Ó The Author(s) 2012. This article is published with open access at Springerlink.com Abstract An anaerobic enrichment culture inoculated possible within a pH range from 9 to 10.5 (optimum at pH with a sample of sediments from soda lakes of the Kulunda 10) and a salt concentration at pH 10 from 0.2 to 2 M total Steppe with elemental sulfur as electron acceptor and for- Na? (optimum at 0.6 M). According to the phylogenetic mate as electron donor at pH 10 and moderate salinity analysis, strain AHT28 represents a deep independent inoculated with sediments from soda lakes in Kulunda lineage within the order Bacillales with a maximum of Steppe (Altai, Russia) resulted in the domination of a 90 % 16S rRNA gene similarity to its closest cultured Gram-positive, spore-forming bacterium strain AHT28. representatives. On the basis of its distinct phenotype and The isolate is an obligate anaerobe capable of respiratory phylogeny, the novel haloalkaliphilic anaerobe is suggested growth using elemental sulfur, thiosulfate (incomplete as a new genus and species, Desulfuribacillus alkaliar- T T reduction) and arsenate as electron acceptor with H2, for- senatis (type strain AHT28 = DSM24608 = UNIQEM mate, pyruvate and lactate as electron donor. -
Bacterial Ecology of Abattoir Wastewater Treated by an Anaerobic
Bacterial ecology of abattoir wastewater treated by an anaerobic digestor Linda Jabari, Hana Gannoun, Eltaief Khelifi, Jean-Luc Cayol, Jean-Jacques Godon, Moktar Hamdi, Marie-Laure Fardeau To cite this version: Linda Jabari, Hana Gannoun, Eltaief Khelifi, Jean-Luc Cayol, Jean-Jacques Godon, et al.. Bacterial ecology of abattoir wastewater treated by an anaerobic digestor. Brazilian Journal of Microbiology, Sociedade Brasileira de Microbiologia, 2016, 47 (1), pp.73-84. 10.1016/j.bjm.2015.11.029. hal- 02633155 HAL Id: hal-02633155 https://hal.inrae.fr/hal-02633155 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. b r a z i l i a n j o u r n a l o f m i c r o b i o l o g y 4 7 (2 0 1 6) 73–84 h ttp://www.bjmicrobiol.com.br/ Environmental Microbiology Bacterial ecology of abattoir wastewater treated by an anaerobic digestor a,b a,c a b Linda Jabari , Hana Gannoun , Eltaief Khelifi , Jean-Luc Cayol , d a b,∗ Jean-Jacques Godon , Moktar Hamdi , Marie-Laure Fardeau a Université de Carthage, Laboratoire d’Ecologie et de Technologie Microbienne, Institut National des Sciences Appliquées et de Technologie (INSAT), 2 Boulevard de la terre, B.P. -
WO 2014/135633 Al 12 September 2014 (12.09.2014) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization I International Bureau (10) International Publication Number (43) International Publication Date WO 2014/135633 Al 12 September 2014 (12.09.2014) P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every C12N 9/04 (2006.01) C12P 7/16 (2006.01) kind of national protection available): AE, AG, AL, AM, C12N 9/88 (2006.01) AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, (21) Number: International Application DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, PCT/EP2014/054334 HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, (22) International Filing Date: KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, 6 March 2014 (06.03.2014) MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, (25) Filing Language: English SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, (26) Publication Language: English TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: 13 158012.8 6 March 2013 (06.03.2013) EP (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, (71) Applicants: CLARIANT PRODUKTE (DEUTSCH- GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, SZ, TZ, LAND) GMBH [DE/DE]; Briiningstrasse 50, 65929 UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, Frankfurt am Main (DE). -
Complex Array of Endobionts in Petalomonas Sphagnophila, a Large Heterotrophic Euglenid Protist from Sphagnum-Dominated Peatlands
The ISME Journal (2010) 4, 1108–1120 & 2010 International Society for Microbial Ecology All rights reserved 1751-7362/10 www.nature.com/ismej ORIGINAL ARTICLE Complex array of endobionts in Petalomonas sphagnophila, a large heterotrophic euglenid protist from Sphagnum-dominated peatlands Eunsoo Kim1, Jong Soo Park2, Alastair GB Simpson2, Shigeru Matsunaga3, Masakatsu Watanabe3, Akio Murakami4, Katrin Sommerfeld1, Naoko T Onodera1 and John M Archibald1 1Department of Biochemistry and Molecular Biology, Canadian Institute for Advanced Research, Program in Integrated Microbial Biodiversity, Dalhousie University, Halifax, NS, Canada; 2Department of Biology, Canadian Institute for Advanced Research, Program in Integrated Microbial Biodiversity, Dalhousie University, Halifax, NS, Canada; 3Department of Photoscience, Graduate University for Advanced Sciences, Hayama, Japan and 4Kobe University Research Center for Inland Seas, Awaji, Japan Petalomonas sphagnophila is a poorly studied plastid-lacking euglenid flagellate living in Sphagnum-dominated peatlands. Here we present a broad-ranging microscopic, molecular and microspectrophotometric analysis of uncultured P. sphagnophila collected from four field locations in Nova Scotia, Canada. Consistent with its morphological characteristics, 18S ribosomal DNA (rDNA) phylogenies indicate that P. sphagnophila is specifically related to Petalomonas cantuscygni, the only other Petalomonas species sequenced to date. One of the peculiar characteristics of P. sphagnophila is the presence of several green-pigmented particles B5 lmin diameter in its cytoplasm, which a previously published study suggested to be cyanobacterial endosymbionts. New data presented here, however, suggest that the green intracellular body may not be a cyanobacterium but rather an uncharacterized prokaryote yet to be identified by molecular sequencing. 16S rDNA library sequencing and fluorescence in situ hybridizations show that P. -
Lotus Seed Oligosaccharides at Various Dosages with Prebiotic Activity Regulate Gut Microbiota and Relieve Constipation in Mice T
Food and Chemical Toxicology 134 (2019) 110838 Contents lists available at ScienceDirect Food and Chemical Toxicology journal homepage: www.elsevier.com/locate/foodchemtox Lotus seed oligosaccharides at various dosages with prebiotic activity regulate gut microbiota and relieve constipation in mice T Han Sua,d,e, Jinghao Chena,d,e, Song Miaob,a,d, Kaibo Denga,b,c,d,e, Jiawen Liua, ∗∗ ∗ Shaoxiao Zenga,c,d,e, , Baodong Zhenga,c,d,e,XuLua,b,c,d,e, a College of Food Science, Fujian Agriculture and Forestry University, 15 Shangxiadian Road, 350002, Fuzhou, China b Teagasc Food Research Centre, Food Chemistry and Technology Department, Moorepark, Fermoy, Co.Cork, Ireland c Institute of Food Science and Technology, Fujian Agriculture and Forestry University, 18 Simon Pit Road, 350002, Fuzhou, China d China-Ireland International Cooperation Center for Food Material Science and Structure Design, Fujian Agriculture and Forestry University, 350002, Fuzhou, China e Fujian Provincial Key Laboratory of Quality Science and Processing Technology in Special Starch, Fujian Agriculture and Forestry University, Fuzhou, 350002, China ARTICLE INFO ABSTRACT Keywords: The aim of this study was to evaluate the effects of lotus seed oligosaccharides (formulation consisting of LSO2, Lotus seeds LSO3-1, LSO3-2 and LSO4; relative ratios are 1.107:0.554:0.183:0.443, m/m/m/m) at dosages of 0.42, 0.83 g/d/ Oligosaccharides kg bw and 2.49 g/d/kg bw on the microbiota composition and the propulsion of intestinal contents in the gut of Resistant starch mice. The results showed that fecal water content increased in treated mice; there was less gut microbiota Gut microbiota diversity than in other groups; and there was a large number of fauna in the cecum of the mice. -
Patent ( 10 ) Patent No
US010363308B2 (12 ) United States Patent ( 10 ) Patent No. : US 10 , 363, 308 B2 Clube et al. ( 45 ) Date of Patent: * Jul. 30 , 2019 ( 54 ) SELECTIVELY ALTERING MICROBIOTA (58 ) Field of Classification Search FOR IMMUNE MODULATION CPC . .. A61K 39 /3955 ; A61K 39 /0011 ; A61K 31/ 7105 ; A61K 2039 /505 ; A61P 37 /00 ; A61P 35 /00 ; A61N 1 /360002 (71 ) Applicant: SNIPR Technologies Limited , London See application file for complete search history . (GB ) ( 56 ) References Cited (72 ) Inventors : Jasper Clube , London (GB ); Morten U . S . PATENT DOCUMENTS Sommer , Copenhagen Ø ( DK ) ; 4 ,626 , 504 A 12 / 1986 Puhler et al. Christian Grøndahl, Copenhagen Ø 5 ,633 , 154 A 5 / 1997 Schaefer et al. 8 , 241, 498 B2 8 / 2012 Summer et al . ( DK ) 8 , 252 , 576 B2 8 / 2012 Campbell et al. 8 , 906 ,682 B2 12 /2014 June et al. ( 73 ) Assignee : SNIPR Technologies Limited , London 8 , 911 , 993 B2 12 / 2014 June et al . 8 ,916 ,381 B1 12 /2014 June et al . (GB ) 8 ,975 ,071 B1 3 /2015 June et al . 9 , 101, 584 B2 8 / 2015 June et al . 9 , 102 ,760 B2 8 / 2015 June et al . ( * ) Notice : Subject to any disclaimer, the term of this 9 , 102 ,761 B2 8 / 2015 June et al. patent is extended or adjusted under 35 9 , 113 ,616 B2 8 / 2015 MacDonald et al. U . S . C . 154 ( b ) by 0 days. 9 , 328 , 156 B2 5 / 2016 June et al . 9 ,464 , 140 B2 10 /2016 June et al . 9 ,481 , 728 B2 11/ 2016 June et al. -
General Microbiota of the Soft Tick Ornithodoros Turicata Parasitizing the Bolson Tortoise (Gopherus flavomarginatus) in the Mapimi Biosphere Reserve, Mexico
biology Article General Microbiota of the Soft Tick Ornithodoros turicata Parasitizing the Bolson Tortoise (Gopherus flavomarginatus) in the Mapimi Biosphere Reserve, Mexico Sergio I. Barraza-Guerrero 1,César A. Meza-Herrera 1 , Cristina García-De la Peña 2,* , Vicente H. González-Álvarez 3 , Felipe Vaca-Paniagua 4,5,6 , Clara E. Díaz-Velásquez 4, Francisco Sánchez-Tortosa 7, Verónica Ávila-Rodríguez 2, Luis M. Valenzuela-Núñez 2 and Juan C. Herrera-Salazar 2 1 Unidad Regional Universitaria de Zonas Áridas, Universidad Autónoma Chapingo, 35230 Bermejillo, Durango, Mexico; [email protected] (S.I.B.-G.); [email protected] (C.A.M.-H.) 2 Facultad de Ciencias Biológicas, Universidad Juárez del Estado de Durango, 35010 Gómez Palacio, Durango, Mexico; [email protected] (V.Á.-R.); [email protected] (L.M.V.-N.); [email protected] (J.C.H.-S.) 3 Facultad de Medicina Veterinaria y Zootecnia No. 2, Universidad Autónoma de Guerrero, 41940 Cuajinicuilapa, Guerrero, Mexico; [email protected] 4 Laboratorio Nacional en Salud, Diagnóstico Molecular y Efecto Ambiental en Enfermedades Crónico-Degenerativas, Facultad de Estudios Superiores Iztacala, 54090 Tlalnepantla, Estado de México, Mexico; [email protected] (F.V.-P.); [email protected] (C.E.D.-V.) 5 Instituto Nacional de Cancerología, 14080 Ciudad de México, Mexico 6 Unidad de Biomedicina, Facultad de Estudios Superiores Iztacala, Universidad Nacional Autónoma de México, 54090 Tlalnepantla, Estado de México, Mexico 7 Departamento de Zoología, Universidad de Córdoba.Edificio C-1, Campus Rabanales, 14071 Cordoba, Spain; [email protected] * Correspondence: [email protected]; Tel.: +52-871-386-7276; Fax: +52-871-715-2077 Received: 30 July 2020; Accepted: 3 September 2020; Published: 5 September 2020 Abstract: The general bacterial microbiota of the soft tick Ornithodoros turicata found on Bolson tortoises (Gopherus flavomarginatus) were analyzed using next generation sequencing. -
Reorganising the Order Bacillales Through Phylogenomics
Systematic and Applied Microbiology 42 (2019) 178–189 Contents lists available at ScienceDirect Systematic and Applied Microbiology jou rnal homepage: http://www.elsevier.com/locate/syapm Reorganising the order Bacillales through phylogenomics a,∗ b c Pieter De Maayer , Habibu Aliyu , Don A. Cowan a School of Molecular & Cell Biology, Faculty of Science, University of the Witwatersrand, South Africa b Technical Biology, Institute of Process Engineering in Life Sciences, Karlsruhe Institute of Technology, Germany c Centre for Microbial Ecology and Genomics, University of Pretoria, South Africa a r t i c l e i n f o a b s t r a c t Article history: Bacterial classification at higher taxonomic ranks such as the order and family levels is currently reliant Received 7 August 2018 on phylogenetic analysis of 16S rRNA and the presence of shared phenotypic characteristics. However, Received in revised form these may not be reflective of the true genotypic and phenotypic relationships of taxa. This is evident in 21 September 2018 the order Bacillales, members of which are defined as aerobic, spore-forming and rod-shaped bacteria. Accepted 18 October 2018 However, some taxa are anaerobic, asporogenic and coccoid. 16S rRNA gene phylogeny is also unable to elucidate the taxonomic positions of several families incertae sedis within this order. Whole genome- Keywords: based phylogenetic approaches may provide a more accurate means to resolve higher taxonomic levels. A Bacillales Lactobacillales suite of phylogenomic approaches were applied to re-evaluate the taxonomy of 80 representative taxa of Bacillaceae eight families (and six family incertae sedis taxa) within the order Bacillales. -
(ST). the Table
1 SUPPLEMENTAL MATERIALS Growth Media Modern Condition Seawater Freshwater Light T°C Atmosphere AMCONA medium BG11 medium – Synechococcus – – Synechocystis – [C] in PAL [C] in the [C] in the Gas Nutrients Modern Nutrients (ppm) Medium Medium Ocean NaNO3 CO2 ~407.8 Na2SO4 25.0mM 29mM Nitrogen 50 Standard (17.65mM) μmol (ST) NaNO NaNO 20°C O ~209’460 Nitrogen 3 3 MgSO 0.304mM photon 2 (549µM) (13.7µM) 4 /m2s FeCl3 6.56µM 2nM Ammonium 0.6g/L ZnSO 254nM 0.5nM ferric stock N ~780’790 4 2 citrate (10ml NaMoO 105nM 105nM 4 green stock/1L) 2 Table S 1 Description of the experimental condition defined as Standard Condition (ST). The table 3 shows the concentrations of fundamental elements, such as C, N, S, and Fe used for the AMCONA 4 seawater medium (Fanesi et al., 2014) and BG11 freshwater medium (Stanier et al., 1971) flushing air 5 with using air pump (KEDSUM-310 8W pump; Xiolan, China) Growth Media Possible Proterozoic T° Condition Modified Seawater Modified Freshwater Light Atmosphere AMCONA medium BG11 medium C – Synechococcus – – Synechocystis – [C] in [C] in PPr Nutrients PPr Nutrients Medium Gas ppm Medium NH Cl Na SO 3mM Nitrogen 4 3 2 4 (0.0035mM) CO 2 10’000ppm (20%) NH Cl Possible (~ 2’450% Nitrogen 4 3 MgSO 0.035mM 50 with 20ml/ (100µM) 4 Proterozoic PAL) μmol 20° min (PPr) photon C O2 20’000ppm /m2s (in Air) (~ 10% FeCl 200nM with 5ml/ 3 PAL) Ammonium 0.6g/L stock min ferric 10ml N ZnSO 0.0nM 2 4 citrate green stock/1L (100%) Base gas with NaMoO4 10.5nM 200ml/min 6 Table S 2 Description of the experimental condition defined as Possible Proterozoic Condition (PPr). -
Kroppenstedtia Eburnea Gen. Nov., Sp. Nov., A
International Journal of Systematic and Evolutionary Microbiology (2011), 61, 2304–2310 DOI 10.1099/ijs.0.026179-0 Kroppenstedtia eburnea gen. nov., sp. nov., a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009 Mathias von Jan,1 Nicole Riegger,2 Gabriele Po¨tter,1 Peter Schumann,1 Susanne Verbarg,1 Cathrin Spro¨er,1 Manfred Rohde,3 Bettina Lauer,2 David P. Labeda4 and Hans-Peter Klenk1 Correspondence 1DSMZ – German Collection of Microorganisms and Cell Cultures, 38124 Braunschweig, Germany Hans-Peter Klenk 2Microbiology, Vetter Pharma-Fertigung GmbH & Co. KG, 88212 Ravensburg, Germany [email protected] 3HZI – Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany 4National Center for Agricultural Utilization Research, USDA-ARS, Peoria, IL 61604, USA A Gram-positive, spore-forming, aerobic, filamentous bacterium, strain JFMB-ATET, was isolated in 2008 during environmental screening of a plastic surface in grade C in a contract manufacturing organization in southern Germany. The isolate grew at temperatures of 25–50 6C and at pH 5.0–8.5, forming ivory-coloured colonies with sparse white aerial mycelia. Chemotaxonomic and molecular characteristics of the isolate matched those described for members of the family Thermoactinomycetaceae, except that the cell-wall peptidoglycan contained LL-diaminopimelic acid, while all previously described members of this family display this diagnostic diamino acid in meso-conformation. The DNA G+C content of the novel strain was 54.6 mol%, the main polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol, and the major menaquinone was MK-7. The major fatty acids had saturated C14–C16 branched chains. -
Metabolites from Thermophilic Bacteria I
The Journal of Antibiotics (2014) 67, 795–798 & 2014 Japan Antibiotics Research Association All rights reserved 0021-8820/14 www.nature.com/ja NOTE Metabolites from thermophilic bacteria I: N-propionylanthranilic acid, a co-metabolite of the bacillamide class antibiotics and tryptophan metabolites with herbicidal activity from Laceyella sacchari Hirofumi Akiyama1, Naoya Oku1, Hiroaki Kasai2, Yoshikazu Shizuri2, Seitaro Matsumoto3 and Yasuhiro Igarashi1 The Journal of Antibiotics (2014) 67, 795–798; doi:10.1038/ja.2014.64; published online 28 May 2014 Since the discovery of gramicidin from Brevibacillus brevis in 1940,1 Thermoflavimicrobium, Planifilum, Mechercharimyces, Shimazuella, many important drugs including antibiotics, immunosuppressants, Desmospora, Kroppenstedtia, Marininema and Melghirimyces, based antidiabetic, antiobesity and anticancer drugs have been developed on List of Prokaryotic Names with Standing in Nomenclature: from the metabolites of mesophilic soil bacteria.2 However, as a http://www.bacterio.cict.fr/classifgenerafamilies.html). only two have reflection of worldwide efforts exerted over the years, discovering new been examined as sources for drug discovery. structures is becoming more and more difficult. Because expanding As part of our program to probe the biosynthetic potential of structural diversity of our chemical reservoir is a key requirement to unexpolited bacterial taxa, we have conducted metabolome mining in the successful drug discovery research, untapped microbes are now a strain identified as Laceyella sacchari, which resulted in the isolation gathering significant attention as new biomedical resources.3,4 of two N-acylanthranillic acids (1 and 2), one of which is new to The family Thermoactinomycetaceae (phylum Firmicutes) is one of natural products, as co-metabolites of bacillamides (3 and 4)and the kinships of Bacillaceae but has long been cataloged into N-acetyltryptamine (5). -
Melghirimyces Algeriensis Gen. Nov., Sp. Nov., a Member of the Family Thermoactinomycetaceae, Isolated from a Salt Lake
International Journal of Systematic and Evolutionary Microbiology (2012), 62, 1491–1498 DOI 10.1099/ijs.0.028985-0 Melghirimyces algeriensis gen. nov., sp. nov., a member of the family Thermoactinomycetaceae, isolated from a salt lake Ammara Nariman Addou,1,2 Peter Schumann,3 Cathrin Spro¨er,3 Hocine Hacene,2 Jean-Luc Cayol1 and Marie-Laure Fardeau1 Correspondence 1Laboratoire de Microbiologie MIO-IRD, UMR 235, Aix-Marseille Universite´, case 925, Marie-Laure Fardeau 163 Avenue de Luminy, 13288 Marseille cedex 9, France [email protected] 2Laboratoire de Biologie Cellulaire et Mole´culaire (e´quipe de Microbiologie), Universite´ des Sciences et de la Technologie, Houari Boume´die`nne, Bab Ezzouar, Algiers, Algeria 3Leibniz-Institut DSMZ – Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstraße 7B, 38124 Braunschweig, Germany A novel filamentous bacterium, designated NariEXT, was isolated from soil collected from Chott Melghir salt lake, which is located in the south-east of Algeria. The strain was an aerobic, halotolerant, thermotolerant, Gram-positive bacterium that was able to grow in NaCl concentrations up to 21 % (w/v), at 37–60 6C and at pH 5.0–9.5. The major fatty acids were iso- and anteiso-C15 : 0. The DNA G+C content was 47.3 mol%. The major menaquinone was MK-7, but MK-6 and MK-8 were also present. The polar lipid profile consisted of phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylmonomethylethanolamine (methyl-PE). Results of molecular and phenotypic analysis led to the description of the strain as a new member of the family Thermoactinomycetaceae. The isolate was distinct from members of recognized genera of this family by morphological, biochemical and chemotaxonomic characteristics.