Biocontrol Potential of Pasteuria Spp. for the Management of Plant Parasitic Nematodes
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Desulfuribacillus Alkaliarsenatis Gen. Nov. Sp. Nov., a Deep-Lineage
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Extremophiles (2012) 16:597–605 DOI 10.1007/s00792-012-0459-7 ORIGINAL PAPER Desulfuribacillus alkaliarsenatis gen. nov. sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes D. Y. Sorokin • T. P. Tourova • M. V. Sukhacheva • G. Muyzer Received: 10 February 2012 / Accepted: 3 May 2012 / Published online: 24 May 2012 Ó The Author(s) 2012. This article is published with open access at Springerlink.com Abstract An anaerobic enrichment culture inoculated possible within a pH range from 9 to 10.5 (optimum at pH with a sample of sediments from soda lakes of the Kulunda 10) and a salt concentration at pH 10 from 0.2 to 2 M total Steppe with elemental sulfur as electron acceptor and for- Na? (optimum at 0.6 M). According to the phylogenetic mate as electron donor at pH 10 and moderate salinity analysis, strain AHT28 represents a deep independent inoculated with sediments from soda lakes in Kulunda lineage within the order Bacillales with a maximum of Steppe (Altai, Russia) resulted in the domination of a 90 % 16S rRNA gene similarity to its closest cultured Gram-positive, spore-forming bacterium strain AHT28. representatives. On the basis of its distinct phenotype and The isolate is an obligate anaerobe capable of respiratory phylogeny, the novel haloalkaliphilic anaerobe is suggested growth using elemental sulfur, thiosulfate (incomplete as a new genus and species, Desulfuribacillus alkaliar- T T reduction) and arsenate as electron acceptor with H2, for- senatis (type strain AHT28 = DSM24608 = UNIQEM mate, pyruvate and lactate as electron donor. -
Genetic Disequilibria and the Interpretation of Population Genetic Structure in Daphnia
Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 668 _____________________________ _____________________________ Genetic Disequilibria and the Interpretation of Population Genetic Structure in Daphnia BY LARS M. BERG ACTA UNIVERSITATIS UPSALIENSIS UPPSALA 2001 Dissertation for the Degree of Doctor of Philosophy in Conservation Biology presented at Uppsala University in 2001. ABSTRACT Berg, L. M. 2001. Genetic disequilibria and the interpretation of population genetic structure in Daphnia. Acta Universitatis Upsaliensis. Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 668. 36 pp. Uppsala. ISBN 91-554-5152-7. Understanding the processes that shape the spatial distribution of genetic variation within species is cent- ral to the evolutionary study of diversification and demography. Neutral genetic variation reflects past demographic events as well as current demographic characteristics of populations, and the correct inter- pretation of genetic data requires that the relative impact of these forces can be identified. Details of breeding systems can affect the genetic structure through effects on effective migration rate or on effect- ive population size. Restrictions in recombination rate lead to associations between neutral marker genes and genes under natural selection. Although the effects on genetic structure can be substantial, the pro- cess will often be difficult to tell apart from stochastic effects of history or genetic drift, which may sug- gest -
Ultrastructure and Development of Pasteuria Sp. (S-1 Strain), an Obligate Endoparasite of Belonolaimus Longicaudatus (Nemata: Tylenchida) R
Journal of Nematology 33(4):227–238. 2001. © The Society of Nematologists 2001. Ultrastructure and Development of Pasteuria sp. (S-1 strain), an Obligate Endoparasite of Belonolaimus longicaudatus (Nemata: Tylenchida) R. M. Giblin-Davis,1 D. S. Williams,2 W. P. Wergin,3 D. W. Dickson,4 T. E. Hewlett,4 S. Bekal,5 and J. O. Becker5 Abstract: Pasteuria sp., strain S-1, is a gram-positive, obligate endoparasitic bacterium that uses the phytoparasitic sting nematode, Belonolaimus longicaudatus, as its host in Florida. The host attachment of S-1 appears to be specific to the genus Belonolaimus with development occurring only in juveniles and adults of B. longicaudatus. This bacterium is characterized from other described species of Pasteuria using ultrastructure of the mature endospore. Penetration, development, and sporogenesis were elucidated with TEM, LTSEM, and SEM and are similar to other nematode-specific Pasteuria. Recent analysis of 16S rDNA sequence homology confirms its congeneric ranking with other Pasteuria species and strains from nematodes and cladocerans, and corroborates ultrastructural, morphological, morphometric, and host-range evidence suggesting separate species status. Key words: Belonolaimus longicaudatus, development, obligate nematode endoparasitic bacterium, Pasteuria sp. (S-1 strain), sporo- genesis, sting nematode, ultrastructure. Investigators have identified four nominal species of al., 1989). Thus, traditional procedures for biochemical Pasteuria that are gram-positive, mycelial, endospore- characterization have not -
Plant-Parasitic Nematodes and Their Management: a Review
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by International Institute for Science, Technology and Education (IISTE): E-Journals Journal of Biology, Agriculture and Healthcare www.iiste.org ISSN 2224-3208 (Paper) ISSN 2225-093X (Online) Vol.8, No.1, 2018 Plant-Parasitic Nematodes and Their Management: A Review Misgana Mitiku Department of Plant Pathology, Southern Agricultural Research Institute, Jinka, Agricultural Research Center, Jinka, Ethiopia Abstract Nowhere will the need to sustainably increase agricultural productivity in line with increasing demand be more pertinent than in resource poor areas of the world, especially Africa, where populations are most rapidly expanding. Although a 35% population increase is projected by 2050. Significant improvements are consequently necessary in terms of resource use efficiency. In moving crop yields towards an efficiency frontier, optimal pest and disease management will be essential, especially as the proportional production of some commodities steadily shifts. With this in mind, it is essential that the full spectrums of crop production limitations are considered appropriately, including the often overlooked nematode constraints about half of all nematode species are marine nematodes, 25% are free-living, soil inhabiting nematodes, I5% are animal and human parasites and l0% are plant parasites. Today, even with modern technology, 5-l0% of crop production is lost due to nematodes in developed countries. So, the aim of this work was to review some agricultural nematodes genera, species they contain and their management methods. In this review work the species, feeding habit, morphology, host and symptoms they show on the effected plant and management of eleven nematode genera was reviewed. -
LTER Proposal
Project Summary The KBS LTER Site: Long-term Ecological Research in Row-crop Agriculture Project Summary In 1987 we initiated the KBS Long-term Ecological Research Project in Row-crop Agriculture to examine basic ecological relationships in field-crop ecosystems typical of the US Midwest. Our goal was – and remains – to test the long-term hypothesis that agronomic management based on knowledge of ecological interactions in cropping systems can effectively replace management based on chemical inputs. We established a major field experiment comprising 11 different cropping systems and unmanaged successional communities, corresponding to different levels and types of ecological structure and disturbance and including biologically-based and conventional agricultural management. Within these systems we test hypotheses related to the patterns and processes that underlie ecosystem productivity and environmental performance. Working hypotheses are built around the general topic areas of plant community dynamics, soil microbial populations, insect predator-prey relationships, watershed and field- scale biogeochemistry, human interactions, and regional ecological processes. Intellectual Merit: With this proposal we build on past work to formulate an integrated model of agricultural landscapes that thoroughly incorporates the interactions between human and natural systems. Our overarching theme for this next research phase is “Farming for ecosystem services in a changing environment,” reflecting our desire to understand the full suite of ecosystem services associated with agriculture, including mitigation of undesirable environmental impacts. We propose to focus on responses of the coupled human and natural systems to changing external drivers, including climate change, agricultural intensification (land use alterations), and shifts in global markets. We use a pulse-press disturbance model to delineate the biophysical interactions in agriculture that produce ecosystem services vis a vis human systems. -
Bacillus Penetrans and Related Parasites of Nematodes 1 R
Biocontrol: Bacillus penetrans and Related Parasites of Nematodes 1 R. M. Sayre 2 Abstract: Bacillus penetrans Mankau, 1975, previously described as Duboscqia penetrans Thorne 1940, is a candidate agent for biocontrol of nematodes. This review considers the life stages of this bacterium: vegetative growth phase, colony fragmentation, sporogenesis, soil phase, spore attachment, and penetration into larvae of root-knot nematodes. The morphology of the microthallus colonies and the unusual external features of the spore are discussed. Taxonomic affinities with the actinomycetes, particularly with the genus Pasteuria, are considered. Also dis- cussed are other soil bacterial species that are potential biocontrol agents. Products of their bacterial fermentation in soil are toxic to nematodes, making them effective biocontrol agents. Key Words: Duboscqia, Pasteuria ramosa, Pseudomonas denitrificans, Clostridium butyricum, DesulJovibrio desulJuricans, Bacillus thuringiensis, rickettsia. Nematodes and bacteria are two impor- tional data on two other bacterial parasites tant members of the total biota in soil of nematodes are presented briefly. The habitats. The diversity of the species, and second interaction, amensalism, considers their ubiquity and abundance in soils, for the inltibitory or antibiotic effect of some thousands o[ years have provided oppor- species of bacteria on species of plant- tunity for the evolution of intimate and parasitic nematodes. complex interactions between the two When Thorne (30) described Duboscqia groups of organisms. Theoretically, re- penetrans as a protozoan, he could not peated analysis of soil habitats for bacteria- have realized its bacterial nature because nematode interactions should reveal all of electron-microscope techniques were not the several possible interactions that could available to him, and the concept of the occur between the two species. -
JOURNAL of NEMATOLOGY Morphological And
JOURNAL OF NEMATOLOGY Article | DOI: 10.21307/jofnem-2020-098 e2020-98 | Vol. 52 Morphological and molecular characterization of Heterodera dunensis n. sp. (Nematoda: Heteroderidae) from Gran Canaria, Canary Islands Phougeishangbam Rolish Singh1,2,*, Gerrit Karssen1, 2, Marjolein Couvreur1 and Wim Bert1 Abstract 1Nematology Research Unit, Heterodera dunensis n. sp. from the coastal dunes of Gran Canaria, Department of Biology, Ghent Canary Islands, is described. This new species belongs to the University, K.L. Ledeganckstraat Schachtii group of Heterodera with ambifenestrate fenestration, 35, 9000, Ghent, Belgium. presence of prominent bullae, and a strong underbridge of cysts. It is characterized by vermiform second-stage juveniles having a slightly 2National Plant Protection offset, dome-shaped labial region with three annuli, four lateral lines, Organization, Wageningen a relatively long stylet (27-31 µm), short tail (35-45 µm), and 46 to 51% Nematode Collection, P.O. Box of tail as hyaline portion. Males were not found in the type population. 9102, 6700, HC, Wageningen, Phylogenetic trees inferred from D2-D3 of 28S, partial ITS, and 18S The Netherlands. of ribosomal DNA and COI of mitochondrial DNA sequences indicate *E-mail: PhougeishangbamRolish. a position in the ‘Schachtii clade’. [email protected] This paper was edited by Keywords Zafar Ahmad Handoo. 18S, 28S, Canary Islands, COI, Cyst nematode, ITS, Gran Canaria, Heterodera dunensis, Plant-parasitic nematodes, Schachtii, Received for publication Systematics, Taxonomy. September -
Theory Manual Course No. Pl. Path
NAVSARI AGRICULTURAL UNIVERSITY Theory Manual INTRODUCTORY PLANT NEMATOLOGY Course No. Pl. Path 2.2 (V Dean’s) nd 2 Semester B.Sc. (Hons.) Agri. PROF.R.R.PATEL, ASSISTANT PROFESSOR Dr.D.M.PATHAK, ASSOCIATE PROFESSOR Dr.R.R.WAGHUNDE, ASSISTANT PROFESSOR DEPARTMENT OF PLANT PATHOLOGY COLLEGE OF AGRICULTURE NAVSARI AGRICULTURAL UNIVERSITY BHARUCH 392012 1 GENERAL INTRODUCTION What are the nematodes? Nematodes are belongs to animal kingdom, they are triploblastic, unsegmented, bilateral symmetrical, pseudocoelomateandhaving well developed reproductive, nervous, excretoryand digestive system where as the circulatory and respiratory systems are absent but govern by the pseudocoelomic fluid. Plant Nematology: Nematology is a science deals with the study of morphology, taxonomy, classification, biology, symptomatology and management of {plant pathogenic} nematode (PPN). The word nematode is made up of two Greek words, Nema means thread like and eidos means form. The words Nematodes is derived from Greek words ‘Nema+oides’ meaning „Thread + form‟(thread like organism ) therefore, they also called threadworms. They are also known as roundworms because nematode body tubular is shape. The movement (serpentine) of nematodes like eel (marine fish), so also called them eelworm in U.K. and Nema in U.S.A. Roundworms by Zoologist Nematodes are a diverse group of organisms, which are found in many different environments. Approximately 50% of known nematode species are marine, 25% are free-living species found in soil or freshwater, 15% are parasites of animals, and 10% of known nematode species are parasites of plants (see figure at left). The study of nematodes has traditionally been viewed as three separate disciplines: (1) Helminthology dealing with the study of nematodes and other worms parasitic in vertebrates (mainly those of importance to human and veterinary medicine). -
Microbial Community Composition During Degradation of Organic Matter
TECHNISCHE UNIVERSITÄT MÜNCHEN Lehrstuhl für Bodenökologie Microbial community composition during degradation of organic matter Stefanie Elisabeth Wallisch Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigten Dissertation. Vorsitzender: Univ.-Prof. Dr. A. Göttlein Prüfer der Dissertation: 1. Hon.-Prof. Dr. M. Schloter 2. Univ.-Prof. Dr. S. Scherer Die Dissertation wurde am 14.04.2015 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 03.08.2015 angenommen. Table of contents List of figures .................................................................................................................... iv List of tables ..................................................................................................................... vi Abbreviations .................................................................................................................. vii List of publications and contributions .............................................................................. viii Publications in peer-reviewed journals .................................................................................... viii My contributions to the publications ....................................................................................... viii Abstract -
A Transcriptomic Snapshot of Early Molecular Communication Between Pasteuria Penetrans and Meloidogyne Incognita Victor Phani1, Vishal S
Phani et al. BMC Genomics (2018) 19:850 https://doi.org/10.1186/s12864-018-5230-8 RESEARCH ARTICLE Open Access A transcriptomic snapshot of early molecular communication between Pasteuria penetrans and Meloidogyne incognita Victor Phani1, Vishal S. Somvanshi1, Rohit N. Shukla2, Keith G. Davies3,4* and Uma Rao1* Abstract Background: Southern root-knot nematode Meloidogyne incognita (Kofoid and White, 1919), Chitwood, 1949 is a key pest of agricultural crops. Pasteuria penetrans is a hyperparasitic bacterium capable of suppressing the nematode reproduction, and represents a typical coevolved pathogen-hyperparasite system. Attachment of Pasteuria endospores to the cuticle of second-stage nematode juveniles is the first and pivotal step in the bacterial infection. RNA-Seq was used to understand the early transcriptional response of the root-knot nematode at 8 h post Pasteuria endospore attachment. Results: A total of 52,485 transcripts were assembled from the high quality (HQ) reads, out of which 582 transcripts were found differentially expressed in the Pasteuria endospore encumbered J2 s, of which 229 were up-regulated and 353 were down-regulated. Pasteuria infection caused a suppression of the protein synthesis machinery of the nematode. Several of the differentially expressed transcripts were putatively involved in nematode innate immunity, signaling, stress responses, endospore attachment process and post-attachment behavioral modification of the juveniles. The expression profiles of fifteen selected transcripts were validated to be true by the qRT PCR. RNAi based silencing of transcripts coding for fructose bisphosphate aldolase and glucosyl transferase caused a reduction in endospore attachment as compared to the controls, whereas, silencing of aspartic protease and ubiquitin coding transcripts resulted in higher incidence of endospore attachment on the nematode cuticle. -
<I>Heterodera Glycines</I> Ichinohe
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Theses, Dissertations, and Student Research in Agronomy and Horticulture Agronomy and Horticulture Department Summer 8-5-2013 MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA Oscar Perez-Hernandez University of Nebraska-Lincoln Follow this and additional works at: https://digitalcommons.unl.edu/agronhortdiss Part of the Plant Pathology Commons Perez-Hernandez, Oscar, "MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA" (2013). Theses, Dissertations, and Student Research in Agronomy and Horticulture. 65. https://digitalcommons.unl.edu/agronhortdiss/65 This Article is brought to you for free and open access by the Agronomy and Horticulture Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Theses, Dissertations, and Student Research in Agronomy and Horticulture by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA by Oscar Pérez-Hernández A DISSERTATION Presented to the Faculty of The graduate College at the University of Nebraska In Partial Fulfillment of Requirements For the Degree of Doctor of Philosophy Major: Agronomy (Plant Pathology) Under the Supervision of Professor Loren J. Giesler Lincoln, Nebraska August, 2013 MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA Oscar Pérez-Hernández, Ph.D. -
Wo 2010/096550 A2
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date 26 August 2010 (26.08.2010) WO 2010/096550 A2 (51) International Patent Classification: (74) Agents: SALIWANCHIK, David, R. et al; Saliwanchik, C12N 1/20 (2006.01) A61K 35/74 (2006.01) Lloyd & Saliwanchik, P.O. Box 142950, Gainesville, FL A23C 9/123 (2006.01) C12R 1/225 (2006.01) 32614-2950 (US). (21) International Application Number: (81) Designated States (unless otherwise indicated, for every PCT/US2010/024575 kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, (22) International Filing Date: CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, DO, 18 February 2010 (18.02.2010) DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (25) Filing Language: English HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, (26) Publication Language: English ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, (30) Priority Data: NO, NZ, OM, PE, PG, PH, PL, PT, RO, RS, RU, SC, SD, 61/153,5 16 18 February 2009 (18.02.2009) US SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, 61/297,480 22 January 2010 (22.01 .2010) US TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (71) Applicant (for all designated States except US): UNI¬ (84) Designated States (unless otherwise indicated, for every VERSITY OF FLORIDA RESEARCH FOUNDA¬ kind of regional protection available): ARIPO (BW, GH, TION, INC.