CellProfiler cell image analysis software
Created by Anne E. Carpenter and Thouis R. Jones
In the laboratories of David M. Sabatini and Polina Golland at
And now based at
CellProfiler is free and open-source!
If you find it useful, please credit CellProfiler in publications
1. Cite the website (www.cellprofiler.org) 2. Cite the publication (check the website for the citation). 3. Post the reference for your publication on the CellProfiler Forum (accessible from the website) so that we are aware of it.
These steps will help us to maintain funding for the project and continue to improve and support it. Table of contents
Using CellProfiler
● User guide ❍ Getting started ■ When To Use CellProfiler
■ New Features
■ How To Build A Pipeline ❍ General help ■ Using Metadata In CellProfiler
■ Memory And Speed
■ Test Mode
■ Batch Processing
■ Run multiple pipelines ❍ Folders and files ■ Default Input Folder
■ Default Output Folder
■ Output Filename ● Module figures ❍ File Save