Different Resting Stages of the Plasmodial Rhizopod Reticulomyxa Filosa
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
A Gene Required for the Regulation of Photosynthetic Light Harvesting in the Cyanobacterium Synechocystis PCC6803
A gene required for the regulation of photosyuthetic light harvesting in the cyanobacterium Synechocystis PCC6803 A thesis submitted for the degree of Doctor of Philosophy by Daniel Emlyn-Jones B.Sc. (Hons) Department of Biology University College London ProQuest Number: 10013938 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest. ProQuest 10013938 Published by ProQuest LLC(2016). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. Microform Edition © ProQuest LLC. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 THESIS ABSTRACT In cyanobacteria, state transitions serve to regulate the distribution of excitation energy delivered to the two photosystem reaction centres from the accessory light harvesting system, the phycobilisome. The trigger for state transitions is the redox state of the cytochrome b f complex/plastoquinone pool. The signal transduction events that connect this redox signal to changes in light harvesting are unknown. In order to identify signal transduction factors required for the state transition, random cartridge mutagenesis was employed in the cyanobacterium Synechocystis PCC6803 to generate a library of random, genetically tagged mutants. The state transition in cyanobacteria is accompanied by a change in fluorescence emission from PS2. By using a fluorescence video imaging system to observe this fluorescence change in mutant colonies it was possible to isolate mutants unable to perform state transitions. -
Multigene Eukaryote Phylogeny Reveals the Likely Protozoan Ancestors of Opis- Thokonts (Animals, Fungi, Choanozoans) and Amoebozoa
Accepted Manuscript Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opis- thokonts (animals, fungi, choanozoans) and Amoebozoa Thomas Cavalier-Smith, Ema E. Chao, Elizabeth A. Snell, Cédric Berney, Anna Maria Fiore-Donno, Rhodri Lewis PII: S1055-7903(14)00279-6 DOI: http://dx.doi.org/10.1016/j.ympev.2014.08.012 Reference: YMPEV 4996 To appear in: Molecular Phylogenetics and Evolution Received Date: 24 January 2014 Revised Date: 2 August 2014 Accepted Date: 11 August 2014 Please cite this article as: Cavalier-Smith, T., Chao, E.E., Snell, E.A., Berney, C., Fiore-Donno, A.M., Lewis, R., Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa, Molecular Phylogenetics and Evolution (2014), doi: http://dx.doi.org/10.1016/ j.ympev.2014.08.012 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 1 Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts 2 (animals, fungi, choanozoans) and Amoebozoa 3 4 Thomas Cavalier-Smith1, Ema E. Chao1, Elizabeth A. Snell1, Cédric Berney1,2, Anna Maria 5 Fiore-Donno1,3, and Rhodri Lewis1 6 7 1Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK. -
(Apicomplexa: Adeleorina) from the Blood of Echis Pyramidum: Morphology and SSU Rdna Sequence Hepatozoon Pyramidumi Sp
Original Article ISSN 1984-2961 (Electronic) www.cbpv.org.br/rbpv Hepatozoon pyramidumi sp. n. (Apicomplexa: Adeleorina) from the blood of Echis pyramidum: morphology and SSU rDNA sequence Hepatozoon pyramidumi sp. n. (Apicomplexa: Adeleorina) do sangue de Echis pyramidum: morfologia e sequência de SSU rDNA Lamjed Mansour1,2; Heba Mohamed Abdel-Haleem3; Esam Sharf Al-Malki4; Saleh Al-Quraishy1; Abdel-Azeem Shaban Abdel-Baki3* 1 Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia 2 Unité de Recherche de Biologie Intégrative et Écologie Évolutive et Fonctionnelle des Milieux Aquatiques, Département de Biologie, Faculté des Sciences de Tunis, Université de Tunis El Manar, Tunisia 3 Zoology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt 4 Department of Biology, College of Sciences, Majmaah University, Majmaah 11952, Riyadh Region, Saudi Arabia How to cite: Mansour L, Abdel-Haleem HM, Al-Malki ES, Al-Quraishy S, Abdel-Baki AZS. Hepatozoon pyramidumi sp. n. (Apicomplexa: Adeleorina) from the blood of Echis pyramidum: morphology and SSU rDNA sequence. Braz J Vet Parasitol 2020; 29(2): e002420. https://doi.org/10.1590/S1984-29612020019 Abstract Hepatozoon pyramidumi sp. n. is described from the blood of the Egyptian saw-scaled viper, Echis pyramidum, captured from Saudi Arabia. Five out of ten viper specimens examined (50%) were found infected with Hepatozoon pyramidumi sp. n. with parasitaemia level ranged from 20-30%. The infection was restricted only to the erythrocytes. Two morphologically different forms of intraerythrocytic stages were observed; small and mature gamonts. The small ganomt with average size of 10.7 × 3.5 μm. Mature gamont was sausage-shaped with recurved poles measuring 16.3 × 4.2 μm in average size. -
ABSTRACT Title of Dissertation: IDENTIFICATION, LIFE HISTORY
ABSTRACT Title of Dissertation: IDENTIFICATION, LIFE HISTORY, AND ECOLOGY OF PERITRICH CILIATES AS EPIBIONTS ON CALANOID COPEPODS IN THE CHESAPEAKE BAY Laura Roberta Pinto Utz, Doctor of Philosophy, 2003 Dissertation Directed by: Professor Eugene B. Small Department of Biology Adjunct Professor D. Wayne Coats Department of Biology and Smithsonian Environmental Research Center Epibiotic relationships are a widespread phenomenon in marine, estuarine and freshwater environments, and include diverse epibiont organisms such as bacteria, protists, rotifers, and barnacles. Despite its wide occurrence, epibiosis is still poorly known regarding its consequences, advantages, and disadvantages for host and epibiont. Most studies performed about epibiotic communities have focused on the epibionts’ effects on host fitness, with few studies emphasizing on the epibiont itself. The present work investigates species composition, spatial and temporal fluctuations, and aspects of the life cycle and attachment preferences of Peritrich epibionts on calanoid copepods in Chesapeake Bay, USA. Two species of Peritrich ciliates (Zoothamnium intermedium Precht, 1935, and Epistylis sp.) were identified to live as epibionts on the two most abundant copepod species (Acartia tonsa and Eurytemora affinis) during spring and summer months in Chesapeake Bay. Infestation prevalence was not significantly correlated with environmental variables or phytoplankton abundance, but displayed a trend following host abundance. Investigation of the life cycle of Z. intermedium suggested that it is an obligate epibiont, being unable to attach to non-living substrates in the laboratory or in the field. Formation of free-swimming stages (telotrochs) occurs as a result of binary fission, as observed for other peritrichs, and is also triggered by death or molt of the crustacean host. -
PROTISTAS MARINOS Viviana A
PROTISTAS MARINOS Viviana A. Alder INTRODUCCIÓN plantas y animales. Según este esquema básico, a las plantas les correspondían las características de En 1673, el editor de Philosophical Transac- ser organismos sésiles con pigmentos fotosinté- tions of the Royal Society of London recibió una ticos para la síntesis de las sustancias esenciales carta del anatomista Regnier de Graaf informan- para su metabolismo a partir de sustancias inor- do que un comerciante holandés, Antonie van gánicas (nutrición autótrofa), y de poseer células Leeuwenhoek, había “diseñado microscopios rodeadas por paredes de celulosa. En oposición muy superiores a aquéllos que hemos visto has- a las plantas, les correspondía a los animales los ta ahora”. Van Leeuwenhoek vendía lana, algo- atributos de tener motilidad activa y de carecer dón y otros materiales textiles, y se había visto tanto de pigmentos fotosintéticos (debiendo por en la necesidad de mejorar las lentes de aumento lo tanto procurarse su alimento a partir de sustan- que comúnmente usaba para contar el número cias orgánicas sintetizadas por otros organismos) de hebras y evaluar la calidad de fibras y tejidos. como de paredes celulósicas en sus células. Así fue que construyó su primer microscopio de Es a partir de los estudios de Georg Gol- lente única: simple, pequeño, pero con un poder dfuss (1782-1848) que estos diminutos organis- de magnificación de hasta 300 aumentos (¡diez mos, invisibles a ojo desnudo, comienzan a ser veces más que sus precursores!). Este magnífico clasificados como plantas primarias -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Journal of Bacteriology
JOURNAL OF BACTERIOLOGY Volume 169 June 1987 No. 6 STRUCTURE AND FUNCTION Assembly of a Chemically Synthesized Peptide of Escherichia coli Type 1 Fimbriae into Fimbria-Like Antigenic Structures. Soman N. Abraham and Edwin H. Beachey ....... 2460-2465 Structure of the Staphylococcus aureus Cell Wall Determined by the Freeze- Substitution Method. Akiko Umeda, Yuji Ueki, and Kazunobu Amako ... 2482-2487 Labeling of Binding Sites for 02-Microglobulin (02m) on Nonfibrillar Surface Structures of Mutans Streptococci by Immunogold and I21m-Gold Electron Microscopy. Dan Ericson, Richard P. Ellen, and Ilze Buivids ........... 2507-2515 Bicarbonate and Potassium Regulation of the Shape of Streptococcus mutans NCTC 10449S. Lin Tao, Jason M. Tanzer, and T. J. MacAlister......... 2543-2547 Periodic Synthesis of Phospholipids during the Caulobacter crescentus Cell Cycle. Edward A. O'Neill and Robert A. Bender.............................. 2618-2623 Association of Thioredeoxin with the Inner Membrane and Adhesion Sites in Escherichia coli. M. E. Bayer, M. H. Bayer, C. A. Lunn, and V. Pigiet 2659-2666 Cell Wall and Lipid Composition of Isosphaera pallida, a Budding Eubacterium from Hot Springs. S. J. Giovannoni, Walter Godchaux III, E. Schabtach, and R. W. Castenholz.............................................. 2702-2707 Charge Distribution on the S Layer of Bacillus stearothermophilus NRS 1536/3c and Importance of Charged Groups for Morphogenesis and Function. Margit Saira and Uwe B. Sleytr ....................................... 2804-2809 PLANT MICROBIOLOGY Rhizobium meliloti ntrA (rpoN) Gene Is Required for Diverse Metabolic Functions. Clive W. Ronson, B. Tracy Nixon, Lisa M. Albright, and Frederick M. Ausubel............................................... 2424-2431 Bradyrhizobium japonicum Mutants Defective in Nitrogen Fixation and Molybde- num Metabolism. Robert J. -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Systematic Index
Systematic Index The systematic index contains the scientific names of all taxa mentioned in the book e.g., Anisonema sp., Anopheles and the vernacular names of protists, for example, tintinnids. The index is two-sided, that is, species ap - pear both with the genus-group name first e.g., Acineria incurvata and with the species-group name first ( incurvata , Acineria ). Species and genera, valid and invalid, are in italics print. The scientific name of a subgenus, when used with a binomen or trinomen, must be interpolated in parentheses between the genus-group name and the species- group name according to the International Code of Zoological Nomenclature. In the following index, these paren - theses are omitted to simplify electronic sorting. Thus, the name Apocolpodidium (Apocolpodidium) etoschense is list - ed as Apocolpodidium Apocolpodidium etoschense . Note that this name is also listed under “ Apocolpodidium etoschense , Apocolpodidium ” and “ etoschense , Apocolpodidium Apocolpodidium ”. Suprageneric taxa, communities, and vernacular names are represented in normal type. A boldface page number indicates the beginning of a detailed description, review, or discussion of a taxon. f or ff means include the following one or two page(s), respectively. A Actinobolina vorax 84 Aegyriana paroliva 191 abberans , Euplotes 193 Actinobolina wenrichii 84 aerophila , Centropyxis 87, 191 abberans , Frontonia 193 Actinobolonidae 216 f aerophila sphagnicola , Centropyxis 87 abbrevescens , Deviata 140, 200, 212 Actinophrys sol 84 aerophila sylvatica -
Characterization of Cyanobacterial Phycobilisomes in Zwitterionic
Proc. Natl. Acad. Sci. USA Vol. 76, No. 12, pp. 6162-6166, December 1979 Biochemistry Characterization of cyanobacterial phycobilisomes in zwitterionic detergents (Synechococcus/photosynthetic accessory pigments/sedimentation/electron microscopy/aggregation) ALEXANDER N. GLAZER*, ROBLEY C. WILLIAMSt, GREGORY YAMANAKA*, AND H. K. SCHACHMANt *Department of Microbiology and Immunology, and tDepartment of Molecular Biology, University of California, Berkeley, California 94720 Contributed by Robley C. Williams, September 10, 1979 ABSTRACT Properties of cyanobacterial phycobilisomes preparations of nearly uniform-sized phycobilisomes were (from Synechococcus spp. 6301 and 6312 and Synechocystis sp. obtained. Ultrastructural studies of the particles prepared in 6701) prepared in the presence of two different zwitterionic detergents were compared to those of phycobilisomes detached zwitterionic detergents were facilitated by the marked decrease from membranes with the nonionic detergent Triton X-100 and in aggregation. Such studies show that phycobilisomes from then freed from Triton by sedimentation through high-salt su- different organisms have certain characteristics in common, crose density gradients. The absorption spectra, polypeptide as concluded by others (1, 7, 8), but also exhibit distinctive composition, and ultrastructure of phycobilisomes were inde- structural features. pendent of the detergent used during the preparation. Phyco- bilisomes from certain cyanobacteria aggregated in the absence MATERIALS AND METHODS of detergent. Such -
Protozoologica ACTA Doi:10.4467/16890027AP.17.016.7497 PROTOZOOLOGICA
Acta Protozool. (2017) 56: 181–189 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.17.016.7497 PROTOZOOLOGICA Allovahlkampfia minuta nov. sp., (Acrasidae, Heterolobosea, Excavata) a New Soil Amoeba at the Boundary of the Acrasid Cellular Slime Moulds Alvaro DE OBESO FERNADEZ DEL VALLE, Sutherland K. MACIVER Biomedical Sciences, Edinburgh Medical School, University of Edinburgh, Scotland, UK Abstract. We report the isolation of a new species of Allovahlkampfia, a small cyst-forming heterolobosean soil amoeba. Phylogenetic analysis of the 18S rDNA and the internal transcribed spacers indicates that Allovahlkampfia is more closely related to the acrasids than to other heterolobosean groups and indicates that the new strain (GF1) groups with Allovahlkampfia tibetiensisand A. nederlandiensis despite being significantly smaller than these and any other described Allovahlkampfia species. GF1 forms aggregated cyst masses similar to the early stages of Acrasis sorocarp development, in agreement with the view that it shares ancestry with the acrasids. Time-lapse video mi- croscopy reveals that trophozoites are attracted to individuals that have already begun to encyst or that have formed cysts. Although some members of the genus are known to be pathogenic the strain GF1 does not grow above 28oC nor at elevated osmotic conditions, indicating that it is unlikely to be a pathogen. INTRODUCTION and habit. The heterolobosean acrasid slime moulds are very similar to the amoebozoan slime moulds too in life cycle, but these remarkable similarities in ap- The class heterolobosea was first created on mor- pearance and function are most probably due to parallel phological grounds to unite the schizopyrenid amoe- bae/amoeboflagellates with the acrasid slime moulds evolution.