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2019 Scientific Report and 2020 Perspectives Institut Pasteur Du Cambodge 2019 Scientific Report and 2020 Perspectives Institut Pasteur du Cambodge Institut Pasteur International Network TABLE OF CONTENTS 1. LIST OF ACRONYMS .............................................................................. 3 2. EXECUTIVE SUMMARY .......................................................................... 6 3. PERSPECTIVES AND CHALLENGES ...................................................... 8 3.1 SHORT-TERM OBJECTIVES .....................................................................................9 3.1.1 INSTITUTIONAL CHALLENGES ������������������������������������������������������������������������������������������������������ 9 3.1.2 SCIENTIFIC CHALLENGES ...........................................................................................................11 3.2 MID-TERM OBJECTIVES ����������������������������������������������������������������������������������������12 3.2.1 INSTITUTIONAL CHALLENGES ���������������������������������������������������������������������������������������������������� 12 3.2.2 SCIENTIFIC CHALLENGES .......................................................................................................... 13 4. 2019 ACTIVITIES AT INSTITUT PASTEUR DU CAMBODGE .................. 14 4.1 MALARIA MOLECULAR EPIDEMIOLOGY ................................................................14 4.1.1 FUNCTIONAL STRUCTURE OF THE UNIT.................................................................................... 14 4.1.2 RESEARCH PROGRAMS – MAJOR ACHIEVEMENTS IN 2018-2019 ............................................. 15 4.1.3 RESEARCH PROGRAMS –2020 PLANS ....................................................................................... 18 4.1.4 SUPPORT TO NATIONAL AUTHORITIES ...................................................................................... 20 4.1.5 TEACHING AND TRAINING .......................................................................................................... 20 4.1.6 TEACHING ����������������������������������������������������������������������������������������������������������������������������������� 21 4.1.7 PUBLICATION LIST 2019 .............................................................................................................. 21 4.2 EPIDEMIOLOGY & PUBLIC HEALTH ......................................................................22 4.2.1 FUNCTIONAL STRUCTURE OF THE UNIT ................................................................................... 22 4.2.2 RESEARCH PROGRAMS IN 2019 ............................................................................................... 23 4.2.3 RESEARCH PROGRAMS-2020 PLANS ......................................................................................... 29 4.2.4 SUPPORT TO NATIONAL AUTHORITIES ...................................................................................... 29 4.2.5 TEACHING AND TRAINING .......................................................................................................... 29 4.2.6 PUBLICATION LIST 2019 AND PLANNED PUBLICATIONS 2020 ................................................... 30 4.3 IMMUNOLOGY UNIT ���������������������������������������������������������������������������������������� 31 4.3.1 FUNCTIONAL STRUCTURE OF THE UNIT.................................................................................... 31 4.3.2 RESEARCH PROGRAMS-MAJOR ACHIEVEMENTS IN 2019 ��������������������������������������������������������� 32 4.3.3 RESEARCH PROGRAMS –2020 PLANS ....................................................................................... 33 4.3.4 SUPPORT TO NATIONAL AUTHORITIES ...................................................................................... 36 4.3.5 TEACHING AND TRAINING .......................................................................................................... 36 4.3.6 PUBLICATION LIST 2019 .............................................................................................................. 37 Institut Pasteur International Network 1 / 78 4.4 VIROLOGY ....................................................................................................... 38 4.4.1 FUNCTIONAL STRUCTURE OF THE UNIT.................................................................................... 38 4.4.2 RESEARCH PROGRAMMES – MAJOR ACHIEVEMENTS IN 2019 ................................................. 38 4.4.3 RESEARCH PROGRAMMES – 2020 PLANS ................................................................................. 48 4.4.4 SUPPORT TO NATIONAL AUTHORITIES ...................................................................................... 50 4.4.5 TEACHING AND TRAINING .......................................................................................................... 52 4.4.6 PUBLICATION LIST 2019 .............................................................................................................. 52 4.5 MEDICAL ENTOMOLOGY ���������������������������������������������������������������������������������������54 4.5.1 FUNCTIONAL STRUCTURE OF THE UNIT.................................................................................... 54 4.5.2 RESEARCH PROGRAMS – MAJOR ACHIEVEMENTS IN 2019 ...................................................... 54 4.5.3 RESEARCH PROGRAMS – 2020 PLANS ...................................................................................... 56 4.5.4 SUPPORT TO NATIONAL AUTHORITIES ...................................................................................... 57 4.5.5 TEACHING AND TRAINING .......................................................................................................... 57 4.5.6 PUBLICATION LIST 2019 .............................................................................................................. 58 4.6 LABORATORY FOR ENVIRONMENT AND FOOD SAFETY (LEFS) ������������������������������������������������������59 4.6.1 FUNCTIONAL STRUCTURE OF THE UNIT.................................................................................... 59 4.6.2 ROUTINE ACTIVITIES 2019 ......................................................................................................... 59 4.6.3 RESEARCH PROGRAMS - MAJOR ACHIEVEMENTS IN 2019 ������������������������������������������������������� 61 4.6.4 RESEARCH PROGRAMS - 2020 PLANS ....................................................................................... 63 4.6.5 SUPPORT TO NATIONAL AUTHORITIES ...................................................................................... 63 4.6.6 TEACHING AND TRAINING .......................................................................................................... 64 4.6.7 PUBLICATION LIST 2019 .............................................................................................................. 64 4.7 MEDICAL BIOLOGY LABORATORY ������������������������������������������������������������������������65 4.7.1 FUNCTIONAL STRUCTURE OF THE UNIT.................................................................................... 65 4.7.2 ROUTINE ACTIVITY 2019 ............................................................................................................. 65 4.7.3 RESEARCH PROGRAMS – MAJOR ACHIEVEMENTS IN 2019 ...................................................... 69 4.7.4 RESEARCH PROGRAMS AND IMPLEMENTATION ACTIVITIES – 2020 PLANS ............................. 71 4.7.5 SUPPORT TO NATIONAL AUTHORITIES ...................................................................................... 72 4.7.6 TEACHING AND TRAINING .......................................................................................................... 73 4.7.7 PUBLICATION LIST 2019 .............................................................................................................. 74 4.8 OTHER SERVICES PROVIDED BY THE INSTITUT PASTEUR DU CAMBODGE ������������� 75 4.8.1 RABIES PREVENTION CENTER HIGHLIGHTS FOR 2019 ............................................................. 75 4.8.2 VACCINE INTERNATIONAL CENTER FOR 2019 ........................................................................... 77 5. CONCLUSION ��������������������������������������������������������������������������������������� 77 2 / 78 Institut Pasteur International Network 1. LIST OF ACRONYMS ACIP Action Concertée Inter-Pasteurienne (Institut Pasteur) ACT Artemisinin combination-based resistance AFD Agence Française pour le Développement (French Development Agency) AFRIMS Armed Forces Research Institute for Medical Sciences AIV Avian Influenza Viruses AMP Antimicrobial Peptides AMR Antimicrobial Resistance Agence Nationale de Recherche sur le SIDA et les Hépatites (French National Agency for AIDS ANRS and Hepatitis Research) ANSES Agence Nationale de Sécurite Sanitaire (French National Agency for Sanitary Safety) Antibiotic resistance at the Human/Animal/Environment interface in a “One Health” Approach in ARCAHE Cambodia – FSPI project ARTC Anti-Rabies treatment Center for post-exposure prophylaxis (Service open to public) ASAQ Artesunate/amodiaquine ASIDE Alerting and Surveillance for Infectious Diseases Epidemics AQ Amodiaquine AQ-R Amodiaquine Resistant(ce) AVIEASAN Alliance Nationale pour les Sciences de le Vie et de la Santé (France) BSL Biosafety level Bacterial Infections and Antibiotic-Resistant Diseases among Young Children in Low Income BIRDY Countries Consortium of Animal Networks to Assess Risk of Emerging Infectious Diseases through CANARIES Enhanced Surveillance CDC Centers for Disease Control
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