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ACS – the Archival Cytometry Standard
http://flowcyt.sf.net/acs/latest.pdf ACS – the Archival Cytometry Standard Archival Cytometry Standard ACS International Society for Advancement of Cytometry Candidate Recommendation DRAFT Document Status The Archival Cytometry Standard (ACS) has undergone several revisions since its initial development in June 2007. The current proposal is an ISAC Candidate Recommendation Draft. It is assumed, however not guaranteed, that significant features and design aspects will remain unchanged for the final version of the Recommendation. This specification has been formally tested to comply with the W3C XML schema version 1.0 specification but no position is taken with respect to whether a particular software implementing this specification performs according to medical or other valid regulations. The work may be used under the terms of the Creative Commons Attribution-ShareAlike 3.0 Unported license. You are free to share (copy, distribute and transmit), and adapt the work under the conditions specified at http://creativecommons.org/licenses/by-sa/3.0/legalcode. Disclaimer of Liability The International Society for Advancement of Cytometry (ISAC) disclaims liability for any injury, harm, or other damage of any nature whatsoever, to persons or property, whether direct, indirect, consequential or compensatory, directly or indirectly resulting from publication, use of, or reliance on this Specification, and users of this Specification, as a condition of use, forever release ISAC from such liability and waive all claims against ISAC that may in any manner arise out of such liability. ISAC further disclaims all warranties, whether express, implied or statutory, and makes no assurances as to the accuracy or completeness of any information published in the Specification. -
The Machine That Builds Itself: How the Strengths of Lisp Family
Khomtchouk et al. OPINION NOTE The Machine that Builds Itself: How the Strengths of Lisp Family Languages Facilitate Building Complex and Flexible Bioinformatic Models Bohdan B. Khomtchouk1*, Edmund Weitz2 and Claes Wahlestedt1 *Correspondence: [email protected] Abstract 1Center for Therapeutic Innovation and Department of We address the need for expanding the presence of the Lisp family of Psychiatry and Behavioral programming languages in bioinformatics and computational biology research. Sciences, University of Miami Languages of this family, like Common Lisp, Scheme, or Clojure, facilitate the Miller School of Medicine, 1120 NW 14th ST, Miami, FL, USA creation of powerful and flexible software models that are required for complex 33136 and rapidly evolving domains like biology. We will point out several important key Full list of author information is features that distinguish languages of the Lisp family from other programming available at the end of the article languages and we will explain how these features can aid researchers in becoming more productive and creating better code. We will also show how these features make these languages ideal tools for artificial intelligence and machine learning applications. We will specifically stress the advantages of domain-specific languages (DSL): languages which are specialized to a particular area and thus not only facilitate easier research problem formulation, but also aid in the establishment of standards and best programming practices as applied to the specific research field at hand. DSLs are particularly easy to build in Common Lisp, the most comprehensive Lisp dialect, which is commonly referred to as the “programmable programming language.” We are convinced that Lisp grants programmers unprecedented power to build increasingly sophisticated artificial intelligence systems that may ultimately transform machine learning and AI research in bioinformatics and computational biology. -
Narciso Martí Oliet Universidad Complutense De Madrid, 2018 Resumen
BF y el asombroso mundo de los lenguajes esotéricos Narciso Martí Oliet Universidad Complutense de Madrid, 2018 Resumen Entre los miles de lenguajes de programación que existen, hay una especie que se ha hecho más visible en los últimos años, la de los lenguajes esotéricos. Se trata de lenguajes que no pretenden facilitarle la vida al programador o al menos facilitar la programación de ciertos sistemas, sino precisamente todo lo contrario; en la creación de muchos de ellos ha primado la diversión sobre la utilidad. En esta presentación veremos un panorama general de esta especie de lenguajes, prestando un poco más de atención a BF, uno de los lenguajes más famosos entre ellos. GitHub’s most popular PLs Ruby C++ C PHP Shell scripts Python TypeScript Java C# JavaScript PL Explorations (textbook) JavaScript Java CoffeeScript Clojure Lua Elm Python Erlang Ruby Go Julia Swift PL Explorations (more langs) Fortran C++ ML TypeScript COBOL Rust OCaml Dart Lisp CLU Haskell APL Algol Ada F# Prolog Simula C# Elixir K Smalltalk Scala PHP Io C Perl Hack Factor Lenguajes esotéricos Naturaleza ofuscada Utilidad dudosa Características poco comunes Prueba de concepto Según algunos APL, Lisp, Haskell, Oz (multiparadigma), JavaScript son buenos ejemplos. Lenguajes esotéricos Lenguaje de programación minimalista Sintaxis muy básica Alfabeto restringido Desafío para la creación e implementación Desafío para la programación Lenguajes esotéricos Cercanos a conceptos esenciales en computación Máquinas de Turing y máquinas de registros Turing computabilidad y -
An Evaluation of Go and Clojure
An evaluation of Go and Clojure A thesis submitted in partial satisfaction of the requirements for the degree Bachelors of Science in Computer Science Fall 2010 Robert Stimpfling Department of Computer Science University of Colorado, Boulder Advisor: Kenneth M. Anderson, PhD Department of Computer Science University of Colorado, Boulder 1. Introduction Concurrent programming languages are not new, but they have been getting a lot of attention more recently due to their potential with multiple processors. Processors have gone from growing exponentially in terms of speed, to growing in terms of quantity. This means processes that are completely serial in execution will soon be seeing a plateau in performance gains since they can only rely on one processor. A popular approach to using these extra processors is to make programs multi-threaded. The threads can execute in parallel and use shared memory to speed up execution times. These multithreaded processes can significantly speed up performance, as long as the number of dependencies remains low. Amdahl‘s law states that these performance gains can only be relative to the amount of processing that can be parallelized [1]. However, the performance gains are significant enough to be looked into. These gains not only come from the processing being divvied up into sections that run in parallel, but from the inherent gains from sharing memory and data structures. Passing new threads a copy of a data structure can be demanding on the processor because it requires the processor to delve into memory and make an exact copy in a new location in memory. Indeed some studies have shown that the problem with optimizing concurrent threads is not in utilizing the processors optimally, but in the need for technical improvements in memory performance [2]. -
Metadefender Core V4.12.2
MetaDefender Core v4.12.2 © 2018 OPSWAT, Inc. All rights reserved. OPSWAT®, MetadefenderTM and the OPSWAT logo are trademarks of OPSWAT, Inc. All other trademarks, trade names, service marks, service names, and images mentioned and/or used herein belong to their respective owners. Table of Contents About This Guide 13 Key Features of Metadefender Core 14 1. Quick Start with Metadefender Core 15 1.1. Installation 15 Operating system invariant initial steps 15 Basic setup 16 1.1.1. Configuration wizard 16 1.2. License Activation 21 1.3. Scan Files with Metadefender Core 21 2. Installing or Upgrading Metadefender Core 22 2.1. Recommended System Requirements 22 System Requirements For Server 22 Browser Requirements for the Metadefender Core Management Console 24 2.2. Installing Metadefender 25 Installation 25 Installation notes 25 2.2.1. Installing Metadefender Core using command line 26 2.2.2. Installing Metadefender Core using the Install Wizard 27 2.3. Upgrading MetaDefender Core 27 Upgrading from MetaDefender Core 3.x 27 Upgrading from MetaDefender Core 4.x 28 2.4. Metadefender Core Licensing 28 2.4.1. Activating Metadefender Licenses 28 2.4.2. Checking Your Metadefender Core License 35 2.5. Performance and Load Estimation 36 What to know before reading the results: Some factors that affect performance 36 How test results are calculated 37 Test Reports 37 Performance Report - Multi-Scanning On Linux 37 Performance Report - Multi-Scanning On Windows 41 2.6. Special installation options 46 Use RAMDISK for the tempdirectory 46 3. Configuring Metadefender Core 50 3.1. Management Console 50 3.2. -
Agent-Based Architectures and Algorithms for Energy Management in Smart Gribs : Application to Smart Power Generation and Residential Demand Response Robin Roche
Agent-Based Architectures and Algorithms for Energy Management in Smart Gribs : Application to Smart Power Generation and Residential Demand Response Robin Roche To cite this version: Robin Roche. Agent-Based Architectures and Algorithms for Energy Management in Smart Gribs : Application to Smart Power Generation and Residential Demand Response. Other. Université de Technologie de Belfort-Montbeliard, 2012. English. NNT : 2012BELF0191. tel-00864268 HAL Id: tel-00864268 https://tel.archives-ouvertes.fr/tel-00864268 Submitted on 20 Sep 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Université de Technologie de Belfort–Montbéliard Institut de Recherche sur les Transports, l’Énergie et la Société Laboratoire Systèmes et Transports École Doctorale Sciences pour l’Ingénieur et Microtechniques Algorithmes et Architectures Multi-Agents pour la Gestion de l’Énergie dans les Réseaux Électriques Intelligents Application aux Centrales à Turbines à Gaz et à l’Effacement Diffus Résidentiel Thèse no191 présentée et soutenue publiquement en vue de l’obtention du titre de Docteur en Génie Électrique par Robin Roche le 7 décembre 2012 Membres du jury : M. Mohamed Benbouzid IUT de Brest, LBMS Président M. Nouredine Hadjsaid INP Grenoble, G2Elab Rapporteur M. -
Clojure, Given the Pun on Closure, Representing Anything Specific
dynamic, functional programming for the JVM “It (the logo) was designed by my brother, Tom Hickey. “It I wanted to involve c (c#), l (lisp) and j (java). I don't think we ever really discussed the colors Once I came up with Clojure, given the pun on closure, representing anything specific. I always vaguely the available domains and vast emptiness of the thought of them as earth and sky.” - Rich Hickey googlespace, it was an easy decision..” - Rich Hickey Mark Volkmann [email protected] Functional Programming (FP) In the spirit of saying OO is is ... encapsulation, inheritance and polymorphism ... • Pure Functions • produce results that only depend on inputs, not any global state • do not have side effects such as Real applications need some changing global state, file I/O or database updates side effects, but they should be clearly identified and isolated. • First Class Functions • can be held in variables • can be passed to and returned from other functions • Higher Order Functions • functions that do one or both of these: • accept other functions as arguments and execute them zero or more times • return another function 2 ... FP is ... Closures • main use is to pass • special functions that retain access to variables a block of code that were in their scope when the closure was created to a function • Partial Application • ability to create new functions from existing ones that take fewer arguments • Currying • transforming a function of n arguments into a chain of n one argument functions • Continuations ability to save execution state and return to it later think browser • back button 3 .. -
Hy Documentation Release 0.12.1+64.G5eb9283
hy Documentation Release 0.12.1+64.g5eb9283 Paul Tagliamonte Apr 14, 2017 Contents 1 Documentation Index 3 1.1 Quickstart................................................4 1.2 Tutorial..................................................5 1.2.1 Basic intro to Lisp for Pythonistas...............................5 1.2.2 Hy is a Lisp-flavored Python..................................7 1.2.3 Macros............................................. 12 1.2.4 Hy <-> Python interop..................................... 13 1.2.5 Protips!............................................. 14 1.3 Hy Style Guide.............................................. 14 1.3.1 Prelude............................................. 15 1.3.2 Layout & Indentation...................................... 15 1.3.3 Coding Style.......................................... 16 1.3.4 Conclusion........................................... 17 1.3.5 Thanks............................................. 17 1.4 Documentation Index.......................................... 18 1.4.1 Command Line Interface.................................... 18 1.4.2 Hy <-> Python interop..................................... 19 1.4.3 Hy (the language)........................................ 21 1.4.4 Hy Core............................................. 47 1.4.5 Reader Macros......................................... 65 1.4.6 Internal Hy Documentation................................... 66 1.5 Extra Modules Index........................................... 72 1.5.1 Anaphoric Macros....................................... 72 1.5.2 -
Scalable Speculative Parallelization on Commodity Clusters
Scalable Speculative Parallelization on Commodity Clusters Hanjun Kim Arun Raman Feng Liu Jae W. Leey David I. August Departments of Electrical Engineering and Computer Science y Parakinetics Inc. Princeton University Princeton, USA Princeton, USA [email protected] {hanjunk, rarun, fengliu, august}@princeton.edu Abstract by the cluster is difficult. For these reasons, such programs have been deemed unsuitable for execution on clusters. While clusters of commodity servers and switches are the most popular form of large-scale parallel computers, many programs are Recent research has demonstrated that a combination of not easily parallelized for execution upon them. In particular, high pipeline parallelism (DSWP), thread-level speculation (TLS), inter-node communication cost and lack of globally shared memory and speculative pipeline parallelism (Spec-DSWP) can un- appear to make clusters suitable only for server applications with lock significant amounts of parallelism in general-purpose abundant task-level parallelism and scientific applications with regu- programs on shared memory systems [6, 24, 27, 29, 30, 32, lar and independent units of work. Clever use of pipeline parallelism (DSWP), thread-level speculation (TLS), and speculative pipeline 36, 37]. Pipeline parallelization techniques such as DSWP parallelism (Spec-DSWP) can mitigate the costs of inter-thread partition a loop in such a way that the critical path is executed communication on shared memory multicore machines. This paper in a thread-local fashion, with off-critical path data flowing presents Distributed Software Multi-threaded Transactional memory unidirectionally through the pipeline. The combination of these (DSMTX), a runtime system which makes these techniques applicable two factors makes the program execution highly insensitive to non-shared memory clusters, allowing them to efficiently address inter-node communication costs. -
Easybuild Documentation Release 20210706.0 Ghent University
EasyBuild Documentation Release 20210907.0 Ghent University Tue, 07 Sep 2021 08:55:25 Contents 1 What is EasyBuild? 3 2 Concepts and terminology 5 2.1 EasyBuild framework..........................................5 2.2 Easyblocks................................................6 2.3 Toolchains................................................7 2.3.1 system toolchain.......................................7 2.3.2 dummy toolchain (DEPRECATED) ..............................7 2.3.3 Common toolchains.......................................7 2.4 Easyconfig files..............................................7 2.5 Extensions................................................8 3 Typical workflow example: building and installing WRF9 3.1 Searching for available easyconfigs files.................................9 3.2 Getting an overview of planned installations.............................. 10 3.3 Installing a software stack........................................ 11 4 Getting started 13 4.1 Installing EasyBuild........................................... 13 4.1.1 Requirements.......................................... 14 4.1.2 Using pip to Install EasyBuild................................. 14 4.1.3 Installing EasyBuild with EasyBuild.............................. 17 4.1.4 Dependencies.......................................... 19 4.1.5 Sources............................................. 21 4.1.6 In case of installation issues. .................................. 22 4.2 Configuring EasyBuild.......................................... 22 4.2.1 Supported configuration -
An Industrial Strength Theorem Prover for a Logic Based on Common Lisp
An Industrial Strength Theorem Prover for a Logic Based on Common Lisp y z Matt Kaufmannand J Strother Moore Personal use of this material is permitted. particular style of formal veri®cation that has shown consid- However, permission to reprint/republish this erable promise in recent years is the use of general-purpose material for advertising or promotional pur- automated reasoning systems to model systems and prove poses or for creating new collective works for properties of them. Every such reasoning system requires resale or redistribution to servers or lists, or considerable assistance from the user, which makes it im- to reuse any copyrighted component of this portant that the system provide convenient ways for the user work in other works must be obtained from the to interact with it. IEEE.1 One state-of-the-art general-purpose automated reason- ing system is ACL2: ªA Computational Logic for Applica- AbstractÐACL2 is a re-implemented extended version tive Common Lisp.º A number of automated reasoning of Boyer and Moore's Nqthm and Kaufmann's Pc-Nqthm, systems now exist, as we discuss below (Subsection 1.1). In intended for large scale veri®cation projects. This paper this paper we describe ACL2's offerings to the user for con- deals primarily with how we scaled up Nqthm's logic to an venientªindustrial-strengthºuse. WebegininSection2with ªindustrial strengthº programming language Ð namely, a a history of theACL2 project. Next, Section 3 describes the large applicative subset of Common Lisp Ð while preserv- logic supportedby ACL2, which has been designed for con- ing the use of total functions within the logic. -
Lisp Exercises
Language-Oriented Programming Assignment Author: Prof. Dr. Bernhard Humm, Darmstadt University of Applied Sciences More Lisp exercises You can find a list of 99 Lisp problems on http://picolisp.com/wiki/?99problems . Select problems you like most. Below you find a selection by me. For all problems: 1. Use recursion and the functions for list processing and mathematics presented in the lecture. You may also use the higher-order functions detect, select, collect, and reduce for solving the exercises. Do not use the Lisp loop macro! 2. Implement a test case and a suitable function and then test your implementation. 1 Working with lists P03 (*) Find the K'th element of a list. The first element in the list is number 1. Example: * (element-at '(a b c d e) 3) C P05 (*) Reverse a list. P06 (*) Find out whether a list is a palindrome. A palindrome can be read forward or backward; e.g. (x a m a x). P15 (**) Replicate the elements of a list a given number of times. Example: * (repli '(a b c) 3) (A A A B B B C C C) Page 1 Language-Oriented Programming P22 (*) Create a list containing all integers within a given range. If second argument is smaller than first, produce a list in descending order. Example: * (range 4 9) (4 5 6 7 8 9) 2 Arithmetic P31 (**) Determine whether a given integer number is prime. Example: * (is-prime 7) T P32 (**) Determine the greatest common divisor of two positive integer numbers. Use Euclid's algorithm. Example: * (gcd 36 63) 9 P35 (**) Determine the prime factors of a given positive integer.