Mutations in the carboxyl terminal sec24 binding motif of the serotonin transporter impair folding of the transporter
Submitted by
Thematic program: Molecular Signal Transduction
Supervisor
Professor and Chairman Institute of Pharmacology Center for Physiology and Pharmacology Medical University of Vienna Waehringer Strasse 13a A-1090 Vienna, Austria
Vienna, October, 2010 ACKNOWLEDGMENTS
First of all, I want to express my sincere gratitude to my supervisor, Prof. Dr. Michael Freissmuth for giving me the opportunity to start my doctoral thesis, his great efforts to explain things clearly and simply, and teaching me everything I know about good scientific work. I want to thank all the members of the pharmacology institute, especially, Dr. Edin Ibrisimovic who was a real brother and helpful to me not only in the lab but also during my life in Austria. Also I couldn’t forget my best friends in the lab Dr. Sonja Sucic and Mr. Subhodeep Sarker for the good social atmosphere in the lab, and building up successful, cooperative, and concerted research team. I want to thank my thesis committee members, Prof. Harald H. Sitte (institute of pharmacology, medical university of Vienna) and Prof. Kristina Djinovic (Department of Biomolecular Structural Chemistry, Max F. Perutz Laboratories, University of Vienna) for valuable comments and suggestion of experiments during regular meeting.
I am very grateful to Egyptian Ministry of Higher Education and State for Scientific Research for providing me scholarship and an opportunity to complete my doctoral studies in Austria. I am also gratefully acknowledging the financial support by the Austrian Science Fund (FWF) through the SFB project (SFB3510 to Prof. Dr. Michael Freissmuth).
Last but not the least; I want to thank my family, especially my wife for their continuous support during my studies.
Ali EL-KASABY List of Contents
I ZUSAMMENFASSUNG 1 II SUMMARY 2 1. INTRODUCTION 3 1.1. Neurotransmitters Transporters 3 1.2. Serotonin transporter (SERT) 3 1.2.1. Structure of SERT 4 1.2.2. Physiological role of the SERT 5 1.2.3. Regulation of the SERT 6 1.2.3.1. Regulation of the SERT by protein-protein interaction 7 1.2.3.2. Receptor mediated regulation of SERT 10 1.2.4. Pharmacology of SERT 11 1.3. Protein quality control 12 1.3.1. Protein folding (proximal quality control) 14 1.3.1.1. Calnexin cycle 14 1.3.1.2. Chemical and pharmacological rescue of misfolded 17 proteins 1.3.2. ER-export (secondary quality control) 20 1.3.2.1. ER-export COPII-machinery 20 1.3.2.1.1. Cargo recognition by COPII 21 1.3.2.1.2. COPII assembly and budding 22 1.4. Aim of the thesis 23 2. EXPERIMENTAL PROCEDURES 24 2.1. Materials 24 2.1.1. Reagents 24 2.2.2. Kits 24 2.2.3. Media and buffers 25 2.2.4. cDNA constructs 24
i 2.2. Methods 29 2.2.1. DNA constructs and cloning 29 2.2.2. Cell culture and transfections 29 2.2.3. Fluorescence microscopy 30 2.2.4. Uptake assays 30 2.2.5. Binding assays 28 2.2.6. pWaldo expression 31 2.2.7. Co-immunoprecipitation 33 2.2.8. Protein deglycosylation 34 3. RESULTS 35 3.1. Carboxyl terminus truncations cause ER retention of the apparently 35 incorrectly folded SERT versions 3.2. Scanning the C-terminus of SERTs for motifs that are required for expression 39 of functional transporter 3.3. ER-trapped SERT still binds [3H] imipramine 43 3.4. Bacterial expression of SERT with a C-terminally fused GFP tag 45 3.5. Recovery of SERT-PG601,602AA, SERT-RI607,608AA and of SERT-RII607- 46 609AAA in complex with calnexin 3.6. Rescue of SERT-RI607,608AA and SERT-RII607-609AAA but not of SERT- 48 PG601,602AA, by chemical and pharmacological chaperones 4. DISCUSSION 51 5. REFERANCES 54 6. COPY RIGHT LICENSE AGREEMENT 68 7. CURRICULUM VITAE 74
ii List of Figures
No Content page 1 The predicted topology of mammalian serotonin transporters 4 2 Possible mechanism of serotonin transport 6 3 Schematic illustration of SERT regulation 7 4 Folding of the protein the ER 14 5 The calnexin/calreticulin cycle 16 6 Comparison of and pharmacological and chemical chaperone modes of action 19 7 Schematic diagram of COPII vesicle 21 8 Cloning strategies of SERT in pWado-system bacterial expression 32 9 Subcellular localization of C-terminally truncated versions of SERT 37 10 Truncation of the C-terminus by more than 16 amino acids abrogates transport 38 of 5-HT and binding of the inhibitor [3H] -CIT by SERT 11 Scanning the region between P601 and P614 to identify sites required for export 41 to the cell surface 12 Mutations of SERT in the position PG601,602, RI607,608 and RII607-609 blunt 5-HT 42 uptake and binding of [3H]imipramine 13 Trapping the wild type SERT in endoplasmic reticulum abolishes uptake but 44 does not affect binding of [3H] imipramine 14 Expression of SERT as constructs that were fused on their C-terminus to GFP 45 (pWaldo-system) 15 Complex formation of SERT-PG601,602AA, SERT-RI607,608AA and SERT- 47 RII607-609AAA with calnexin 16 Rescue of SERT mutant by different chemical and pharmacological 49 chaperones 17 Ibogaine-induced change in [3H]imipramine binding by, substrate uptake by 50 and calnexin association with SERT-RII607-609AAA
iii List of Tables
No Content page 1 Primers sequences 27 2 Sequence alignment of the C-terminal region of selected SLC6-family 36 transporters 3 Affinity estimates for substrate uptake by and inhibitor binding to wild type 36 and C-terminally mutated versions of SERT
iv Abbreviations
Bmax Maximal binding GTP Guanosine-5'-triphosphate BSA Bovine serum albumin Hic-5 Hydrogen peroxide-inducible clone-5 Caco-2 Human epithelial colorectal 5-HT 5-hydroxy tryptamine (serotonin) adenocarcinoma cells IP Immunopreciptation