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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Nocturnal Feeding of Pacific Hake and Jack Mackerel Off the Mouth of the Columbia River, 1998-2004: Implications for Juvenile Salmon Predation Robert L
This article was downloaded by: [Oregon State University] On: 16 August 2011, At: 13:01 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Transactions of the American Fisheries Society Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/utaf20 Nocturnal Feeding of Pacific Hake and Jack Mackerel off the Mouth of the Columbia River, 1998-2004: Implications for Juvenile Salmon Predation Robert L. Emmett a & Gregory K. Krutzikowsky b a Northwest Fisheries Science Center, NOAA Fisheries, 2030 South Marine Science Drive, Newport, Oregon, 97365, USA b Cooperative Institute of Marine Resource Studies, Oregon State University, 2030 South Marine Science Drive, Newport, Oregon, 97365, USA Available online: 09 Jan 2011 To cite this article: Robert L. Emmett & Gregory K. Krutzikowsky (2008): Nocturnal Feeding of Pacific Hake and Jack Mackerel off the Mouth of the Columbia River, 1998-2004: Implications for Juvenile Salmon Predation, Transactions of the American Fisheries Society, 137:3, 657-676 To link to this article: http://dx.doi.org/10.1577/T06-058.1 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.tandfonline.com/page/terms-and- conditions This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, re-distribution, re-selling, loan, sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. -
Cumacea (Crustacea) from Shallow Waters of Bermuda
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Annalen des Naturhistorischen Museums in Wien Jahr/Year: 2001 Band/Volume: 103B Autor(en)/Author(s): Petrescu I., Sterrer W. Artikel/Article: Cumacea (Crustacea) from shallow waters of Bermuda. 89-128 ©Naturhistorisches Museum Wien, download unter www.biologiezentrum.at Ann. Naturhist. Mus. Wien 103 B 89- 128 Wien, Dezember 2001 Cumacea (Crustacea) from shallow waters of Bermuda I. Petrescu* & W. Sterrer** Abstract Seven species of Cumacea, two new {Cumella somersi sp.n. and Schizotrema wittmanni sp.n.) were identified in samples from shallow waters and sea caves of Bermuda. This is the first record of the genus Schizotrema in the Atlantic Ocean, and the first record of Cumella serrata CALM AN, 1911 and Schizotrema agglutinanta (BÂCESCU, 1971) for Bermuda. The paper includes revisions of all species reported from Bermuda. Keywords: Cumacea, Bermuda, new taxa, revisions. Zusammenfassung Von sieben Cumaceen-Arten aus Seichtwasser- und Meereshöhlenproben von Bermuda sind zwei neu für die Wissenschaft: Cumella somersi sp.n. und Schizotrema wittmanni sp.n. Das Genus Schizotrema wird zum erstenmal aus dem Atlantik vermeldet, und die Arten Cumella serrata CALMAN, 1911 and Schizotrema agglutinanta (BÂCESCU, 1971) zum erstenmal von Bermuda. Alle bisher in Bermuda gefundenen Arten wer- den kritisch revidiert. Introduction Situated at 32°18'N, 64°46'W in the northwestern Atlantic Ocean, the archipelago of Bermuda is made up of approximately 150 islands and islets, with a total land mass of only 50 km2. Despite its high latitude, the oceanic island of Bermuda boasts the north- ernmost coral reef system in the world, largely thanks to the warm Gulf Stream which passes halfway between the island and North America. -
University of Southampton Research Repository
University of Southampton Research Repository Copyright © and Moral Rights for this thesis and, where applicable, any accompanying data are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, with out prior permission or charge. This thesis and the accompanying data cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content of the thesis and accompanying research data (where applicable) must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holder/s. When referring to this thesis and any accompanying data, full bibliographic details must be given, e.g. Thesis: Author (Year of Submission) "Full thesis title", University of Southampton, name of the University Faculty or School or Department, PhD Thesis, pagination. Data: Author (Year) Title. URI [dataset] UNIVERSITY OF SOUTHAMPTON Faculty of Environmental and Life Science Ocean and Earth Science Antarctic krill recruitment in the south-west Atlantic sector of the Southern Ocean by Frances Anne Perry BSc (Bangor University) ORCID ID https://orcid.org/0000-0003-1560-1506 Thesis for the degree of Doctor of Philosophy November 2020 UNIVERSITY OF SOUTHAMPTON Abstract Faculty of Environmental and Life Science Ocean and Earth Science Thesis for the degree of Doctor of Philosophy ANTARCTIC KRILL RECRUITMENT IN THE SOUTH-WEST ATLANTIC SECTOR OF THE SOUTHERN OCEAN by Frances Anne Perry Antarctic krill are a key component of the Southern Ocean ecosystem and support a variety of predators as well as an expanding commercial fishery. -
Stomatopod Interrelationships: Preliminary Results Based on Analysis of Three Molecular Loci
Arthropod Systematics & Phylogeny 91 67 (1) 91 – 98 © Museum für Tierkunde Dresden, eISSN 1864-8312, 17.6.2009 Stomatopod Interrelationships: Preliminary Results Based on Analysis of three Molecular Loci SHANE T. AHYONG 1 & SIMON N. JARMAN 2 1 Marine Biodiversity and Biodescurity, National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington, New Zealand [[email protected]] 2 Australian Antarctic Division, 203 Channel Highway, Kingston, Tasmania 7050, Australia [[email protected]] Received 16.iii.2009, accepted 15.iv.2009. Published online at www.arthropod-systematics.de on 17.vi.2009. > Abstract The mantis shrimps (Stomatopoda) are quintessential marine predators. The combination of powerful raptorial appendages and remarkably developed sensory systems place the stomatopods among the most effi cient invertebrate predators. High level phylogenetic analyses have been so far based on morphology. Crown-group Unipeltata appear to have diverged in two broad directions from the outset – one towards highly effi cient ‘spearing’ with multispinous dactyli on the raptorial claws (dominated by Lysiosquilloidea and Squilloidea), and the other towards ‘smashing’ (Gonodactyloidea). In a preliminary molecular study of stomatopod interrelationships, we assemble molecular data for mitochondrial 12S and 16S regions, combined with new sequences from the 16S and two regions of the nuclear 28S rDNA to compare with morphological hypotheses. Nineteen species representing 9 of 17 extant families and 3 of 7 superfamilies were analysed. The molecular data refl ect the overall patterns derived from morphology, especially in a monophyletic Squilloidea, a monophyletic Lysiosquilloidea and a monophyletic clade of gonodactyloid smashers. Molecular analyses, however, suggest the novel possibility that Hemisquillidae and possibly Pseudosquillidae, rather than being basal or near basal in Gonodactyloidea, may be basal overall to the extant stomatopods. -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Crustacea, Malacostraca)*
SCI. MAR., 63 (Supl. 1): 261-274 SCIENTIA MARINA 1999 MAGELLAN-ANTARCTIC: ECOSYSTEMS THAT DRIFTED APART. W.E. ARNTZ and C. RÍOS (eds.) On the origin and evolution of Antarctic Peracarida (Crustacea, Malacostraca)* ANGELIKA BRANDT Zoological Institute and Zoological Museum, Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany Dedicated to Jürgen Sieg, who silently died in 1996. He inspired this research with his important account of the zoogeography of the Antarctic Tanaidacea. SUMMARY: The early separation of Gondwana and the subsequent isolation of Antarctica caused a long evolutionary his- tory of its fauna. Both, long environmental stability over millions of years and habitat heterogeneity, due to an abundance of sessile suspension feeders on the continental shelf, favoured evolutionary processes of “preadapted“ taxa, like for exam- ple the Peracarida. This taxon performs brood protection and this might be one of the most important reasons why it is very successful (i.e. abundant and diverse) in most terrestrial and aquatic environments, with some species even occupying deserts. The extinction of many decapod crustaceans in the Cenozoic might have allowed the Peracarida to find and use free ecological niches. Therefore the palaeogeographic, palaeoclimatologic, and palaeo-hydrographic changes since the Palaeocene (at least since about 60 Ma ago) and the evolutionary success of some peracarid taxa (e.g. Amphipoda, Isopo- da) led to the evolution of many endemic species in the Antarctic. Based on a phylogenetic analysis of the Antarctic Tanaidacea, Sieg (1988) demonstrated that the tanaid fauna of the Antarctic is mainly represented by phylogenetically younger taxa, and data from other crustacean taxa led Sieg (1988) to conclude that the recent Antarctic crustacean fauna must be comparatively young. -
The Influence of Seasonal and Decadal Trends in Coastal Ocean Processes on the Population Biology of the Krill Species Euphausia
The Influence of Seasonal and Decadal Trends in Coastal Ocean Processes on the Population Biology of the krill species Euphausia pacifica: Results of a coupled ecosystem and individual based modeling study By Jeffrey G. Dorman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Thomas M. Powell, Chair Professor Mary E. Power Professor Mark Stacey Fall 2011 The Influence of Seasonal and Decadal Trends in Coastal Ocean Processes on the Population Biology of the krill species Euphausia pacifica: Results of a coupled ecosystem and individual based modeling study Copyright 2011 by Jeffrey G. Dorman Abstract The Influence of Seasonal and Decadal Trends in Coastal Ocean Processes on the Population Biology of the krill species Euphausia pacifica: Results of a coupled ecosystem and individual based modeling study by Jeffrey G. Dorman Doctor of Philosophy in Integrative Biology University of California, Berkeley Professor Thomas M. Powell, Chair Krill of the California Current play a crucial role in the transfer of primary production up to many commercially important higher trophic levels. Understanding the short time scale (weeks to seasonal) and long time scale (decadal) variability in abundance, condition, and spatial patterns that results from changes in ocean conditions is critical if we hope to manage the fishery of any higher trophic levels from more than a single species approach. I have coupled a suite of models in an attempt to understand the impacts of changing ocean conditions on this important prey item. -
Mysida and Lophogastrida of Greece: a Preliminary Checklist
Biodiversity Data Journal 4: e9288 doi: 10.3897/BDJ.4.e9288 Taxonomic Paper Mysida and Lophogastrida of Greece: a preliminary checklist Panayota Koulouri‡, Vasilis Gerovasileiou‡‡, Nicolas Bailly ‡ Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Greece Corresponding author: Panayota Koulouri ([email protected]) Academic editor: Christos Arvanitidis Received: 20 May 2016 | Accepted: 17 Jul 2016 | Published: 01 Nov 2016 Citation: Koulouri P, Gerovasileiou V, Bailly N (2016) Mysida and Lophogastrida of Greece: a preliminary checklist. Biodiversity Data Journal 4: e9288. https://doi.org/10.3897/BDJ.4.e9288 Abstract Background The checklist of Mysida and Lophogastrida of Greece was created within the framework of the Greek Taxon Information System (GTIS), which is one of the applications of the LifeWatchGreece Research Infrastructure (ESFRI) resuming efforts to develop a complete checklist of species recorded and reported from Greek waters. The objectives of the present study were to update and cross-check taxonomically all records of Mysida and Lophogastrida species known to occur in Greek waters in order to search for inaccuracies and omissions. New information The up-to-date checklist of Mysida and Lophogastrida of Greece comprises 49 species, classified to 25 genera. © Koulouri P et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 2 Koulouri P et al. Keywords Mysida, Lophogastrida, Greece, Aegean Sea, Sea of Crete, Ionian Sea, Eastern Mediterranean, checklist Introduction The peracarid crustaceans Lophogastrida, Stygiomysida and Mysida were formerly grouped under the order "Mysidacea". -
Crustaceans Topics in Biodiversity
Topics in Biodiversity The Encyclopedia of Life is an unprecedented effort to gather scientific knowledge about all life on earth- multimedia, information, facts, and more. Learn more at eol.org. Crustaceans Authors: Simone Nunes Brandão, Zoologisches Museum Hamburg Jen Hammock, National Museum of Natural History, Smithsonian Institution Frank Ferrari, National Museum of Natural History, Smithsonian Institution Photo credit: Blue Crab (Callinectes sapidus) by Jeremy Thorpe, Flickr: EOL Images. CC BY-NC-SA Defining the crustacean The Latin root, crustaceus, "having a crust or shell," really doesn’t entirely narrow it down to crustaceans. They belong to the phylum Arthropoda, as do insects, arachnids, and many other groups; all arthropods have hard exoskeletons or shells, segmented bodies, and jointed limbs. Crustaceans are usually distinguishable from the other arthropods in several important ways, chiefly: Biramous appendages. Most crustaceans have appendages or limbs that are split into two, usually segmented, branches. Both branches originate on the same proximal segment. Larvae. Early in development, most crustaceans go through a series of larval stages, the first being the nauplius larva, in which only a few limbs are present, near the front on the body; crustaceans add their more posterior limbs as they grow and develop further. The nauplius larva is unique to Crustacea. Eyes. The early larval stages of crustaceans have a single, simple, median eye composed of three similar, closely opposed parts. This larval eye, or “naupliar eye,” often disappears later in development, but on some crustaceans (e.g., the branchiopod Triops) it is retained even after the adult compound eyes have developed. In all copepod crustaceans, this larval eye is retained throughout their development as the 1 only eye, although the three similar parts may separate and each become associated with their own cuticular lens. -
Order MYCTOPHIFORMES NEOSCOPELIDAE Horizontal Rows
click for previous page 942 Bony Fishes Order MYCTOPHIFORMES NEOSCOPELIDAE Neoscopelids By K.E. Hartel, Harvard University, Massachusetts, USA and J.E. Craddock, Woods Hole Oceanographic Institution, Massachusetts, USA iagnostic characters: Small fishes, usually 15 to 30 cm as adults. Body elongate with no photophores D(Scopelengys) or with 3 rows of large photophores when viewed from below (Neoscopelus).Eyes variable, small to large. Mouth large, extending to or beyond vertical from posterior margin of eye; tongue with photophores around margin in Neoscopelus. Gill rakers 9 to 16. Dorsal fin single, its origin above or slightly in front of pelvic fin, well in front of anal fins; 11 to 13 soft rays. Dorsal adipose fin over end of anal fin. Anal-fin origin well behind dorsal-fin base, anal fin with 10 to 14 soft rays. Pectoral fins long, reaching to about anus, anal fin with 15 to 19 rays.Pelvic fins large, usually reaching to anus.Scales large, cycloid, and de- ciduous. Colour: reddish silvery in Neoscopelus; blackish in Scopelengys. dorsal adipose fin anal-fin origin well behind dorsal-fin base Habitat, biology, and fisheries: Large adults of Neoscopelus usually benthopelagic below 1 000 m, but subadults mostly in midwater between 500 and 1 000 m in tropical and subtropical areas. Scopelengys meso- to bathypelagic. No known fisheries. Remarks: Three genera and 5 species with Solivomer not known from the Atlantic. All Atlantic species probably circumglobal . Similar families in occurring in area Myctophidae: photophores arranged in groups not in straight horizontal rows (except Taaningichthys paurolychnus which lacks photophores). Anal-fin origin under posterior dorsal-fin anal-fin base.