Assessing SARS-Cov-2 Circulation, Variants of Concern, Non-Pharmaceutical Interventions and Vaccine Rollout in the EU/EEA, 15Th Update 10 June 2021
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Molecular Analysis of SARS-Cov-2 Genetic Lineages in Jordan: Tracking the Introduction and Spread of COVID-19 UK Variant of Concern at a Country Level
pathogens Article Molecular Analysis of SARS-CoV-2 Genetic Lineages in Jordan: Tracking the Introduction and Spread of COVID-19 UK Variant of Concern at a Country Level Malik Sallam 1,2,* and Azmi Mahafzah 1,2 1 Department of Pathology, Microbiology and Forensic Medicine, School of Medicine, The University of Jordan, Amman 11942, Jordan; [email protected] 2 Department of Clinical Laboratories and Forensic Medicine, Jordan University Hospital, Amman 11942, Jordan * Correspondence: [email protected]; Tel.: +962-79-184-5186 Abstract: The rapid evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is manifested by the emergence of an ever-growing pool of genetic lineages. The aim of this study was to analyze the genetic variability of SARS-CoV-2 in Jordan, with a special focus on the UK variant of concern. A total of 579 SARS-CoV-2 sequences collected in Jordan were subjected to maximum likelihood and Bayesian phylogenetic analysis. Genetic lineage assignment was undertaken using the Pango system. Amino acid substitutions were investigated using the Protein Variation Effect Analyzer (PROVEAN) tool. A total of 19 different SARS-CoV-2 genetic lineages were detected, with the most frequent being the first Jordan lineage (B.1.1.312), first detected in August 2020 (n = 424, 73.2%). This was followed by the second Jordan lineage (B.1.36.10), first detected in September 2020 (n = 62, 10.7%), and the UK variant of concern (B.1.1.7; n = 36, 6.2%). In the spike gene region, Citation: Sallam, M.; Mahafzah, A. the molecular signature for B.1.1.312 was the non-synonymous mutation A24432T resulting in a Molecular Analysis of SARS-CoV-2 deleterious amino acid substitution (Q957L), while the molecular signature for B.1.36.10 was the Genetic Lineages in Jordan: Tracking synonymous mutation C22444T. -
Coronavirus COVID-19 Outbreak in the EU – Fundamental Rights Implications”
Coronavirus pandemic in the EU – Fundamental Rights Implications Country: Sweden Contractor’s name: Emerga Institute Date: 2 July 2020 DISCLAIMER: This document was commissioned under contract as background material for a comparative report being prepared by the European Union Agency for Fundamental Rights (FRA) for the project “Coronavirus COVID-19 outbreak in the EU – fundamental rights implications”. The information and views contained in the document do not necessarily reflect the views or the official position of the FRA. The document is made available for transparency and information purposes only and does not constitute legal advice or legal opinion. 1 Measures taken by government/public authorities 1.1 Emergency laws/states of emergency Provide information on emergency laws/declarations of states of emergency, including actions taken by police to enforce them and court rulings concerning the legality of such measures. Please include in particular information on developments relating to the protection of the right of association/demonstration; for example, with respect to the public gatherings that took place concerning the death of George Floyd, or other such events. In Sweden, the only constitutionally protected freedom or right that has been restricted for all inhabitants in connection with the spread of the corona virus is the freedom of assembly. According to section 1 of the Ordinance on prohibition on holding public gatherings and public events (Förordning [2020:114] om förbud mot att hålla allmänna sammankomster och offentliga tillställningar), general meetings and public events with more than 50 participants may not be held within Sweden until further notice.1 All other restrictions aimed at the public are posed as recommendations from the government and/or the relevant authorities and cannot be imposed by any actions taken by the police. -
Workshop Reports PDF 2.8 MB
Workshop reports Data science and AI in the age of COVID-19 Reflections on the response of the UK’s data science and AI community to the COVID-19 pandemic Below are the individual reports from the research. Another example of collaboration return to a context in which advances achieved workshops that were convened by The Alan between organisations was the development of during the pandemic would not be possible Turing Institute and the Centre for Facilitation adaptive clinical trials (e.g. RECOVERY8). once the COPI regulations come to an end, in November and December 2020, following despite evidence indicating public support for Challenges the Turing’s ‘AI and data science in the age of the use of health data in research.12 COVID-19’ conference. The workshops were The ability of the data science community to Workshop participants also reported that data summarised by the facilitators and theme respond more successfully to the challenge of sources could benefit from being better linked leads, and the editorial team of the primary the pandemic was hindered by several hurdles. to each other – despite more collaboration, report then applied light editing. These reports many UKRI-funded studies (ISARIC4C,13 are a reflection of the views expressed by Better standardisation and documentation PHOSP-COVID14) are still relatively standalone. workshop participants, and do not necessarily of clinical data (and other forms of data, e.g. Connecting expertise – the right people to reflect the views of The Alan Turing Institute. location) would have been beneficial. Some positive examples of standardisation could the right data to the right problem – was Several of the reports end with references have been replicated for far wider benefit. -
REALM Research Briefing: Vaccines, Variants, and Venitlation
Briefing: Vaccines, Variants, and Ventilation A Briefing on Recent Scientific Literature Focused on SARS-CoV-2 Vaccines and Variants, Plus the Effects of Ventilation on Virus Spread Dates of Search: 01 January 2021 through 05 July 2021 Published: 22 July 2021 This document synthesizes various studies and data; however, the scientific understanding regarding COVID-19 is continuously evolving. This material is being provided for informational purposes only, and readers are encouraged to review federal, state, tribal, territorial, and local guidance. The authors, sponsors, and researchers are not liable for any damages resulting from use, misuse, or reliance upon this information, or any errors or omissions herein. INTRODUCTION Purpose of This Briefing • Access to the latest scientific research is critical as libraries, archives, and museums (LAMs) work to sustain modified operations during the continuing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic. • As an emerging event, the SARS-CoV-2 pandemic continually presents new challenges and scientific questions. At present, SARS-CoV-2 vaccines and variants in the US are two critical areas of focus. The effects of ventilation-based interventions on the spread of SARS-CoV-2 are also an interest area for LAMs. This briefing provides key information and results from the latest scientific literature to help inform LAMs making decisions related to these topics. How to Use This Briefing: This briefing is intended to provide timely information about SARS-CoV-2 vaccines, variants, and ventilation to LAMs and their stakeholders. Due to the evolving nature of scientific research on these topics, the information provided here is not intended to be comprehensive or final. -
L&RS Note | How Parliaments Are Working During the Covid-19
Oireachtas Library & Research Service | Bill Digest L&RS Note How parliaments are working during the Covid- 19 pandemic Charlotte Cousins, Senior Researcher (Parliamentary Affairs) Abstract 29 April 2020 This Note describes how twelve parliaments/assemblies have adapted their procedures and practices to adhere to the restrictions on physical meetings imposed due to Covid-19. Parliaments are continuing to meet with less sittings, dealing with limited business and with fewer members in their chambers. While most parliaments are precluded from holding full virtual plenary sessions, several have introduced some elements of remote working, most commonly virtual committee meetings. Remote voting is rarely feasible, for legal/procedural rather than technical reasons. Oireachtas Library & Research Service | Note Contents Introduction ..................................................................................................................................... 3 Key points ....................................................................................................................................... 4 Parliamentary plenary meetings – physical meetings ...................................................................... 5 Remote meetings and remote voting - procedures .......................................................................... 6 Technology for virtual meetings ...................................................................................................... 9 Conclusion ................................................................................................................................... -
Emergence of Highly Infectious SARS-Cov-2 Variants in Bangladesh
Hasan et al. Trop Med Health (2021) 49:69 https://doi.org/10.1186/s41182-021-00360-w Tropical Medicine and Health LETTER TO THE EDITOR Open Access Emergence of highly infectious SARS-CoV-2 variants in Bangladesh: the need for systematic genetic surveillance as a public health strategy Mohammad Mehedi Hasan1,2, Ian Christopher N. Rocha3, Kimberly G. Ramos3, Trisha Denise D. Cedeño3, Ana Carla dos Santos Costa4, Christos Tsagkaris5, Md. Masum Billah6, Shoaib Ahmad7 and Mohammad Yasir Essar8* Abstract Bangladesh, a low-middle-income country in South Asia is facing one of its worst public health emergencies due to the COVID-19 pandemic. The increase in the number of cases from the disease, since the second half of March 2021, can potentially cause the health system overload, and has, as one of the main reasons, the non-compliance with measures of social distance and the emergence of the variants of concern in the country. This increase in the contagion curve can also provide a favorable environment for the occurrence of more mutations in the structure and genome of the virus. Therefore, there is an urge to carry out genomic surveillance programs in order to identify, moni- tor and characterize these variants, and understand whether the vaccines currently used are efective against them. Keywords: Bangladesh, SARS-CoV-2 variants, Public health, Genetic surveillance Dear editor, in the country began to increase during the middle of Te ongoing Coronavirus Disease 2019 (COVID-19) March 2021. Initially, there was a drop in the number of pandemic is a major burden to health systems world- cases during February 2021, in which the lowest monthly wide, constituting the worst health crisis in history. -
Read the Report As a PDF Exploring the Covid-19
Contents Contents 1 About 2 Executive summary 3 Introduction 5 Landscape review 5 Key findings at this stage 6 A number of symptom trackers in the ecosystem 6 Ecosystem structure 6 Lack of collaboration 6 Lack of transparency around data collection 6 Open data availability 6 User base 7 Specific types of users 7 Location 7 Data discovery 8 Types of data 8 Observations about types of data 9 Commonly asked questions 9 Data standards 9 Representation of communities 10 Changes over time 10 Mental health and wellbeing 11 Outputs 11 Individual guidance 11 Research insights 11 Improvements to existing services 11 How does the data collected relate to the outputs? 12 The symptom tracking data ecosystem 13 The UK symptom tracking data ecosystem 13 Where is value being created in this example? 14 Barriers to impact 14 Opportunities 15 International variations 15 A single source approach 15 A more collaborative approach 16 Where is value being created in this example 17 Open Data Institute 2020 / Report Exploring the Covid-19 symptom-tracking ecosystem 1 Discussion 18 Data discovery 18 Legal complexities 18 Technical barriers 20 Trust and trustworthiness 20 Recommendations 20 Standards for data 21 Enabling hub to facilitate interactions 21 Building trust with the public through ethical approaches 22 Appendices 23 About This report has been researched and produced by the Open Data Institute, and published in January 2021. Its lead author was James Maddison with contributions from Olivier Thereaux and Jeni Tennison. If you want to share feedback by email or would like to get in touch, contact the Open Covid-19 project team at [email protected]. -
COVID-19: Make It the Last Pandemic
COVID-19: Make it the Last Pandemic Disclaimer: The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the Independent Panel for Pandemic Preparedness and Response concerning the legal status of any country, territory, city of area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Report Design: Michelle Hopgood, Toronto, Canada Icon Illustrator: Janet McLeod Wortel Maps: Taylor Blake COVID-19: Make it the Last Pandemic by The Independent Panel for Pandemic Preparedness & Response 2 of 86 Contents Preface 4 Abbreviations 6 1. Introduction 8 2. The devastating reality of the COVID-19 pandemic 10 3. The Panel’s call for immediate actions to stop the COVID-19 pandemic 12 4. What happened, what we’ve learned and what needs to change 15 4.1 Before the pandemic — the failure to take preparation seriously 15 4.2 A virus moving faster than the surveillance and alert system 21 4.2.1 The first reported cases 22 4.2.2 The declaration of a public health emergency of international concern 24 4.2.3 Two worlds at different speeds 26 4.3 Early responses lacked urgency and effectiveness 28 4.3.1 Successful countries were proactive, unsuccessful ones denied and delayed 31 4.3.2 The crisis in supplies 33 4.3.3 Lessons to be learnt from the early response 36 4.4 The failure to sustain the response in the face of the crisis 38 4.4.1 National health systems under enormous stress 38 4.4.2 Jobs at risk 38 4.4.3 Vaccine nationalism 41 5. -
Medical JOUR
RHODE ISLAND M EDiCAL J ournal ZOOM – It’s a Match! Virtual National Match Day is largest on record See page 75 R SPECIAL SECTION, PART II BIOMEDICAL/TRANSLATIONAL RESEARCH in RI GUEST EDITORS: JAMES PADBURY, MD; BONGSUP CHO, PhD ApRiL 2021 VOLUME 104 • NUMBER 3 iSSN 2327-2228 REINVENTING WHAT YOU EXPECT FROM A MEDICAL PROFESSIONAL LIABILITY PROVIDER. With Coverys, you can reduce the distractions that come between diagnosis and outcomes. By leveraging claims data and analytics plus innovative educational resources, we’re helping doctors and administrators reduce distractions and focus on improving clinical, operational, and financial outcomes.Visit coverys.com Insurance products issued by ProSelect® Insurance Company (NE, NAIC 10638) and Preferred Professional Insurance Company® (NE, NAIC 36234). RHODE ISLAND M EDICAL J OURNAL 15 Translational Research: The Time is Now JAMES F. PADBURY, MD BONGSUP P. CHO, PhD GUEST EDITORS James F. Padbury, MD Bongsup Cho, PhD 17 The Time is NOW: Filling the Gaps in Treatment of Opioid-Exposed Infants: A Prospective, Pragmatic, Randomized Control Drug Trial ADAM J. CZYNSKI, DO; ABBOT R. LAPTOOK, MD 22 COBRE on Opioid and Overdose: A Collaborative Research-Based Center Addressing the Crises in Rhode Island and Beyond TRACI C. GREEN, PhD, MSc; ELIANA KAPLOWITZ, BA; KIRSTEN LANGDON, PhD; JACLYN M.W. HUGHTO, PhD, MPH; WILLIAM C. GOEDEL, PhD; ADAM J. CZYNSKI, DO; GAYLE FRASER, BS; JOSIAH RICH, MD, MPH 27 Brown University COBRE Center for Addiction and Disease Risk Exacerbation PETER M. MONTI, PhD; JENNIFER W. TIDEY, PhD; JASJIT S. AHLUWALIA, MD 32 The Center of Biomedical Research Excellence (COBRE) for Perinatal Biology – Accomplishments, Impact, and Long-term Results SUNIL K. -
COVID-19 Weekly Epidemiological Update
COVID-19 Weekly Epidemiological Update Edition 45, published 22 June 2021 In this edition: • Global overview • Special focus: Update on SARS-CoV-2 Variants of Interest and Variants of Concern • Special focus: Global Consultation on SARS-CoV-2 Variants of Concern and their Impact on Public Health Interventions • WHO regional overviews • Key weekly updates Global overview Data as of 20 June 2021 Global numbers of cases and deaths continued to decrease over the past week (14-20 June 2021) with over 2.5 million new weekly cases and over 64 000 deaths, a 6% and a 12% decrease respectively, compared to the previous week (Figure 1). While the number of cases reported globally now exceeds 177 million, last week saw the lowest weekly case incidence since February 2021. This week, the Americas and Western Pacific Regions reported numbers of new weekly cases similar to the previous week, while the South-East Asia and the European Regions reported a decline in the number of new cases. The African Region recorded a marked increase in the number of weekly cases as compared to the previous week (Table 1). Globally, mortality remains high with more than 9000 deaths reported each day over the past week, however, the number of new deaths reported in the past week decreased across all Regions except for the Eastern Mediterranean and the African Regions. Figure 1. COVID-19 cases reported weekly by WHO Region, and global deaths, as of 20 June 2021** 6 000 000 120 000 Americas South-East Asia 5 000 000 100 000 Europe Eastern Mediterranean 4 000 000 Africa -
Effectiveness of COVID-19 Vaccines Against Variants of Concern, Canada
medRxiv preprint doi: https://doi.org/10.1101/2021.06.28.21259420; this version posted July 3, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license . Effectiveness of COVID-19 vaccines against variants of concern, Canada Authors: Sharifa Nasreen PhD1, Siyi He MSc1, Hannah Chung MPH1, Kevin A. Brown PhD1,2,3, Jonathan B. Gubbay MD MSc3, Sarah A. Buchan PhD1,2,3,4, Sarah E. Wilson MD MSc1,2,3,4, Maria E. Sundaram PhD1,2, Deshayne B. Fell PhD1,5,6, Branson Chen MSc1, Andrew Calzavara MSc1, Peter C. Austin PhD1,7, Kevin L. Schwartz MD MSc1,2,3, Mina Tadrous PharmD PhD1,8, Kumanan Wilson MD MSc9, and Jeffrey C. Kwong MD MSc1,2,3,4,10,11 on behalf of the Canadian Immunization Research Network (CIRN) Provincial Collaborative Network (PCN) Investigators Affiliations: 1 ICES, Toronto, ON 2 Dalla Lana School of Public Health, University of Toronto, Toronto, ON 3 Public Health Ontario, ON 4 Centre for Vaccine Preventable Diseases, University of Toronto, Toronto, ON 5 School of Epidemiology and Public Health, University of Ottawa, ON 6 Children’s Hospital of Eastern Ontario Research Institute, Ottawa, ON 7 Institute of Health Policy, Management and Evaluation, University of Toronto, Toronto, ON 8 Women’s College Hospital, Toronto, ON 9 Department of Medicine, University of Ottawa, Ottawa and Bruyere Hospital Research Institutes, Ottawa, ON 10 Department of Family and Community Medicine, University of Toronto, Toronto, ON 11 University Health Network, Toronto, ON Corresponding author: 1 NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. -
Whole Day Download the Hansard
Tuesday Volume 675 5 May 2020 No. 54 HOUSE OF COMMONS OFFICIAL REPORT PARLIAMENTARY DEBATES (HANSARD) Tuesday 5 May 2020 © Parliamentary Copyright House of Commons 2020 This publication may be reproduced under the terms of the Open Parliament licence, which is published at www.parliament.uk/site-information/copyright/. 475 5 MAY 2020 476 to provide devices and internet access to vulnerable children House of Commons and published a list of high-quality online educational resources, and we continue to support parents and Tuesday 5 May 2020 teachers in supporting children at home. Julian Sturdy [V]: Headteachers in York have told me The House met at half-past Eleven o’clock of their frustration that they will have to wait at least another month until they can provide students with laptops under the Government’s scheme. What assurances PRAYERS can my right hon. Friend give me that support will be available to schools in the meantime to help their most [MR SPEAKER in the Chair] disadvantaged students learn from home? The House entered into hybrid scrutiny proceedings (Order, 22 April). Gavin Williamson: As I am sure my hon. Friend will understand, £100 million for computers and other support [NB: [V] denotes a Member participating virtually.] for schools is a major investment, and it takes a while for these resources to arrive at schools. We have already notified multi-academy trusts and local authorities of Oral Answers to Questions what resources they will be getting, and we continue to work to provide resources,with the BBC providing resources in the homes of children right across the country.