A General Approach to Cis-Fused Sesquiterpene Quinones and Synthesis, Characterization, and Catalytic Applications of Bis(Imino)-N-Heterocyclic Carbene Complexes of Iron
Author: Hilan Kaplan
Persistent link: http://hdl.handle.net/2345/3862
This work is posted on eScholarship@BC, Boston College University Libraries.
Boston College Electronic Thesis or Dissertation, 2014
Copyright is held by the author, with all rights reserved, unless otherwise noted.
Boston College
The Graduate School of Arts and Sciences
Department of Chemistry
A GENERAL APPROACH TO CIS-FUSED SESQUITERPENE QUINONES
and
SYNTHESIS, CHARACTERIZATION, AND CATALYTIC APPLICATIONS OF BIS(IMINO)-N-HETEROCYCLIC CARBENE COMPLEXES OF IRON
A dissertation
by
HILAN Z. KAPLAN
submitted in partial fulfillment of the requirements
for the degree of
Doctor of Philosophy
April 2014
© Copyright by HILAN ZEV KAPLAN
2014
For my Nana Norma, who always wanted me to be a doctor. A GENERAL APPROACH TO CIS-FUSED SESQUITERPENE QUINONES
Hilan Z. Kaplan
Thesis Advisor: Jason S. Kingsbury
Abstract
Chapter 1. Sesquiterpene quinones are a prolific class of marine natural products that are particularly interesting due to their antibacterial, antiviral, and anti-inhibitory properties.
Hundreds of these biologically active molecules are based on decalin frameworks, both cis- as well as trans-fused, however, significantly less synthetic work has focused on targeting the cis- fused series of compounds. In this chapter, progress towards an asymmetric, general route to various sesquiterpene quinones in the cleordane family of natural products will be described. The key steps of the synthesis include a highly convergent and diastereoselective reductive alkylation to forge both the requisite cis-ring fusion well as the all carbon quaternary center, as well as a scandium-catalyzed ring expansion of a 6,5-ring system to deliver the decalin core of the molecule. Additionally, the chapter includes the development and substrate scope of both methodologies utilized in the key complexity building reactions.
SYNTHESIS, CHARACTERIZATION, AND CATALYTIC APPLICATIONS OF BIS(IMINO)-N-HETEROCYCLIC CARBENE COMPLEXES OF IRON
Hilan Z. Kaplan
Thesis Advisor: Jeffery A. Byers
Abstract
Chapter 2. Iron complexes ligated by bis(imino)pyridine ligands are remarkably active catalysts for a vast range of organic transformations including polymerization, hydrogenation, hydrosilylation, and hydroboration. Whereas much work has been done to probe the importance of the imine-substituents on catalysis, significantly less information is known about the nature of the central pyridine donor. To study the effects of a more donating ligand in which the pyridine is replaced with an N-heterocyclic carbene, a series of novel ligands and their corresponding iron complexes were synthesized and characterized. Whereas imidazole-derived complexes exhibited exclusively bidentate binding modes, 4,5,6-trihydropyrimidylidene-based ligands adopted a tridentate pincer conformation analogous to complexes of bis(imino)pyridines. Bonding in the five-coordinate bis(imino)-N-heterocyclic carbene complex displayed considerably contracted iron−ligand bond distances compared to the analogous bis(imino)pyridine iron complex.
Chapter 3. The study of physical and electronic structure and bonding in organometallic compounds is a critical for understanding and predicting complex behavior and reactivity. Having synthesized a completely new type of N-heterocyclic carbene (NHC) ligand and the corresponding iron complex, a rigorous study of metal−NHC bonding, magnetism, and redox activity in bis(imino)-NHC (or carbenodiimine, CDI) complexes of iron was carried out. A series of oxidation and reduction reactions on CDI complexes of iron were performed, enabling access to complexes spanning from formally iron(0) to iron (III) oxidation states. A battery of spectroscopic and computational methods, including X-ray crystallography, Mössbauer spectroscopy, SQUID magnetometry, and EPR spectroscopy established the CDI ligand as a redox active chelator. Additionally, a unique iron−carbene interaction was discovered, in which the metal center antiferromagnetically couples with the carbon of the NHC.
Chapter 4. Intent on developing CDI complexes of iron into practical catalysts for both synthetic organic transformations and polymerization, a series of stoichiometric as well as catalytic reactions were carried out to evaluate the reactivity profile of the novel complexes. Halide atom abstraction generated a new cationic species, which demonstrated different coordination chemistry compared to the bis(imino)pyridine analogue. Furthermore, the addition of a hydride or alkyl lithium reagent to the parent (CDI)FeCl2 species resulted in interesting and unexpected reactivity involving the carbene ligand. Preliminary catalytic hydrogenation experiments established (CDI)FeCl2 as a competent catalyst for the reduction of simple alkenes in the presence of Na(Hg) as a reductant under 80 psi of hydrogen. Additionally, the dichloride species could be readily converted into bis(aryloxide) complexes that were active for the polymerization of lactide to produce poly(lactic acid). The polymerization is very controlled (PDI values are < 1.3), and polymers with molecular weights of around 35 kDa can be obtained after 3 hours at room temperature.
R R
iPr iPr iPr iPr O O Cl Cl O O NaO R i N Fe N i i N Fe N O O Pr Pr Pr iPr poly(lactic acid) NN 40 to 23 oC NN 1,2-DME, 23 oC THF, 2h
R=OMe,F
i
Contents
Chapter 1. A General Approach to Cis-Fused Sesquiterpene Quinones ...... 1 1.1 Introduction ...... 2 1.1.1 Isolation and Biological Activity of (–)-ilimaquinone ...... 3 1.1.2 Isolation and Biological Activity of cis-Fused Sesquiterpene Quinones ...... 4 1.2 Previous Strategies and Syntheses ...... 7 1.2.1 The Wiemer-Scott Total Synthesis of (±)-arenarol ...... 7 1.2.2 Terashima’s Total Synthesis of (+)-arenarol ...... 8 1.2.3 Anderson’s Total Synthesis of 6’-hydroxyarenarol ...... 10 1.3 Retrosynthesis...... 14 1.4 Reductive Alkylation ...... 16 1.4.1 Background on Reductive Alkylation ...... 16 1.4.2 Development of Reductive Alkylation with Bicyclic Substrates ...... 17 1.4.3 Synthesis of Reductive Alkylation Electrophiles ...... 22 1.5 Single-Carbon Ring Expansion ...... 24 1.5.1 Background and Previous Examples of Ring Expansion Methods ...... 24 1.5.2 Development of Single-Carbon Homologation of Cyclopentanones ...... 28 1.6 Synthetic Studies Toward 5-epi-ilimaquinone ...... 33 1.6.1 First Generation Synthesis ...... 33 1.6.2 Second Generation Synthesis ...... 43 1.7 Conclusions ...... 55 1.8 Experimental ...... 57 1.8.1 General Considerations ...... 57 1.8.2 Materials ...... 57 1.8.3 Instrumentation ...... 59 1.8.4 Experimental Procedures ...... 60 1.9 References ...... 115 1.10 Spectra ...... 121
ii
Chapter 2. Synthesis of Bis(imino)-N-Heterocylic Carbene Precursors and Their Corresponding Iron Complexes: Development of a Bis(imino)-N-heterocyclic Carbene Analogue to Bis(imino)pyridine Complexes of Iron ...... 185 2.1 Introduction ...... 186 2.1.1 Bis(imino)pyridine Ligands in Iron Catalysis ...... 185 2.1.2 Structure-Activity Relationships in Bis(imino)pyridine Ligands ...... 191 2.1.3 Design of a Novel Bis(imino)-NHC Pincer Complex of Iron ...... 195 2.1.4 Strategy for the Synthesis of a Bis(imino)-N-heterocyclic Carbene Complex .... 197 2.2 Synthesis of Imidazole-Based Carbene Precursors and Metalation to Iron ...... 199 2.2.1 Synthesis and Metalation of Bis(imino)imidazolium Salts ...... 199 2.2.2 Synthesis and Metalation of Homologated Bis(imino)imidazolium Salts...... 206 2.2.3 Synthesis and Attempted Metalation of Bis(imino)benzimidazolium Salts ...... 210 2.3 Synthesis of Pyridine-Based Carbene Precursors and Metalation to Iron ...... 214 2.4 Synthesis of Tetrahydropyrimidine-Based N-heterocyclic Carbene Precursors and Metalation to Iron ...... 219 2.5 Conclusion ...... 226 2.6 Experimental ...... 228 2.6.1 General Considerations ...... 228 2.6.2 Experimental Procedures ...... 230 2.7 References ...... 251 2.8 Spectra ...... 254
Chapter 3. Electronic Structure, Redox Activity, and Metal−NHC Bonding in Bis(imino)pyrimid-2-ylidene Complexes of Iron ...... 278 3.1 Introduction ...... 279 3.1.1 Redox Active Ligands in Catalysis – An Overview ...... 280 3.1.2 Redox Activity in Bis(imino)pyridine Complexes of Iron ...... 284 3.1.3 N-heterocyclic Carbenes – Structure, Bonding, and Redox Activity ...... 288 3.1.4 Combining N-heterocyclic Carbenes and Bis(imino)pyridines – The Bis(imino)-N- heterocyclic Carbene Ligand ...... 292 3.2 Synthesis and Characterization of Oxidized and Reduced Bis(imino)-N-heterocyclic Carbene Complexes of Iron ...... 294 3.2.1 Synthesis of Bis(imino)-N-heterocyclic Carbene Complexes of Iron ...... 294 iii
3.2.2 Characterization Data for (CDI)FeCl (3.20) ...... 295
3.2.3 Characterization Data for (CDI)Fe(CO)2 (3.21) ...... 300
3.2.4 Characterization Data for (CDI)FeCl2 (3.19) ...... 302
3.2.5 Characterization Data for [(CDI)FeCl2](BF4) (3.22) ...... 307 3.2.6 Computational Studies ...... 312 3.3 Discussion and Assignment of Electronic Structures ...... 317 3.3.1 Analysis of Characterization Data ...... 317 3.3.2 Bis(imino)pyridines as Potent Donors ...... 325 3.4 Conclusion ...... 329 3.5 Experimental ...... 332 3.5.1 General Considerations ...... 332 3.5.2 Computational Methods ...... 334 3.5.3 Experimental Procedures ...... 336 3.6 References ...... 339 3.6 Spectra ...... 343
Chapter 4. Stoichiometric Reactivity Studies and Catalytic Applications of Bis(imino)-N- Heterocyclic Carbene Complexes of Iron in the Hydrogenation of Olefins and Polymerization of Lactide ...... 346 4.1 Introduction ...... 347 4.1.1 The Hydrogenation of Olefins Using Iron-Based Catalysts ...... 348 4.1.2 Ring Opening Polymerization of Lactide ...... 354 4.2 Stoichiometric Reactivity Studies of mCarbene Complexes of Iron ...... 360
4.2.1 Halide Abstraction – Synthesis of the Cationic [(CDI)FeCl(CH3CN)]SbF6 ...... 360 4.2.2 Addition of a Hydride – Synthesis of (CDI−H)FeCl ...... 363 4.2.3 Addition of an Alkyl Lithium Reagent ...... 367 4.2.4 Summary of Stoichiometric Reactivity ...... 371 4.3 Catalytic Applications of Bis(imino)-N-heterocyclic Carbene Complexes of Iron – Alkene Hydrogenation...... 373
4.3.1 Synthesis of a (CDI)Fe(N2)2 Species ...... 373 4.3.2 In-situ Catalyst Formation, Hydrogenation, and Substrate Scope ...... 375 4.3.3 Mechanistic Investigation ...... 376 iv
4.3.4 Summary of Catalytic Hydrogenation Results ...... 379 4.4 Catalytic Applications of Bis(imino)-N-heterocyclic Carbene Complexes of Iron – Polymerization of Lactide ...... 381 4.4.1 Synthesis of CDI Iron Bis(alkoxide) Complexes ...... 381
4.4.2 (CDI)Fe(4-methoxyphenoxide)2 (4.36) Catalyzed Lactide Polymerization ...... 384 4.4.3 Summary of Polymerization Results ...... 391 4.5 Conclusion ...... 393 4.6 Experimental ...... 395 4.6.1 General Considerations ...... 395 4.6.2 Experimental Procedures ...... 396 4.7 References ...... 401 4.7 Spectra ...... 404
Appendix 1. X-Ray Crystallographic Data ...... 410 A1.1 X-Ray Crystallography Data from Chapter 1 ...... 411 A1.1.1 Crystallographic Data for 1.61...... 411 A1.1.2 Crystallographic Data for 1.100...... 418 A1.1.3 Crystallographic Data for 1.110...... 426 A1.1.4 Crystallographic Data for 1.111...... 433 A1.1.5. Crystallographic Data for 1.129...... 440 A1.2 X-Ray Crystallography Data from Chapter 2 ...... 447 A1.2.1 Crystallographic Data for 2.33...... 447 A1.2.2 Crystallographic Data for 2.35...... 458 A1.2.3. Crystallographic Data for 2.40...... 467 A1.2.4. Crystallographic Data for 2.41...... 478 A1.2.5. Crystallographic Data for 2.54...... 490 A1.2.6. Crystallographic Data for 2.60...... 500 A1.3 X-Ray Crystallography Data from Chapter 3 ...... 511 A1.3.1 Crystallographic Data for 3.19 at 100K...... 511 A1.3.2 Crystallographic Data for 3.19 at 150 K...... 520 A1.3.3 Crystallographic Data for 3.19 at 200 K...... 531 A1.3.4 Crystallographic Data for 3.19 at 250 K...... 542 v
A1.3.5 Crystallographic Data for 3.20...... 552 A1.3.6 Crystallographic Data for 3.21...... 562 A1.3.7 Crystallographic Data for 3.22 at 80 K...... 572 A1.3.8 Crystallographic Data for 3.22 at 150 K...... 582 A1.3.9 Crystallographic Data for 3.22 at 200 K...... 592 A1.3.1 Crystallographic Data for 3.22 at 298 K...... 602 A1.4 X-Ray Crystallography Data from Chapter 4 ...... 613 A1.4.1 Crystallographic Data for 4.17...... 613 A1.4.2 Crystallographic Data for 4.18...... 623 A1.4.3 Crystallographic Data for 4.25...... 633 A1.4.4 Crystallographic Data for 4.36...... 643
Appendix 2. Coordinates from DFT Calculations ...... 655
A2.1 Coordinates from ORCA for (CDI)FeCl2 (3.19) ...... 656 A2.2 Coordinates from ORCA for (CDI)FeCl (3.20) ...... 658
A2.3 Coordinates from ORCA for (CDI)Fe(CO)2 (3.21) ...... 660
A2.4 Coordinates from ORCA for [(CDI)FeCl2](BF4) (3.20) ...... 662
vi
Acknowledgements
I have been extremely fortunate to have had many people in my life that helped me get to this point as a person, scholar, and scientist. In terms of my interest in chemistry, I first fell in love with the subject when taught by my high school AP Chemistry teacher, Mr. Bushee. The class seemed impractically difficult at the time, but Mr. Bushee was completely committed to me learning and succeeding no matter the cost. My drive to do well in chemistry, no matter how challenging it was, started in that class and has not ceased since.
My true passion for chemistry was almost instantly forged at the University of
Pennsylvania, when Professor Jeffrey D. Winkler, in his infamous monotone, demonstrated a chair flip in sophomore Organic Chemistry class. Professor Winkler became the advisor of my undergraduate studies, during which time he provided me with invaluable advice and wisdom. I casually enjoyed research until Professor Winkler lit a tremendous fire under me that would be motivating for many years into graduate school.
At Boston College I have had the great pleasure of working under the guidance of many outstanding faculty. Professor Jason Kingsbury, as my first advisor, taught me tremendous amounts about the synthesis of organic molecules, while simultaneously giving me freedom to explore my own ideas and passions. To this day, he supports me in both my personal and professional life, and at this point, our relationship is more that of friends then of student and advisor. During my first few years at BC, I also had the privilege of spending a significant amount of time with Professor Kian Tan, whose dedication, drive, and commitment to his research as well as his students was inspiring. My second advisor, Professor Jeffery A. Byers gave me the unique opportunity to do something completely different and challenging, and together we learned about and explored the wonders of iron chemistry. I am convinced my time in his lab opened the door to the opportunities that have been presented to me in terms of my future career, and for that I am very grateful to him. Always concerned with my personal vii interests, Professor James P. Morken advised me throughout graduate school, and has sat on all my committees. His knowledge, leadership, and caring personality have made him a great role model. Professor Amir H. Hoveyda has also been an inspiration to me; his ability to mix art with science has always been something I have admired and strived to do myself. He always encouraged me to think critically and ask questions, and I greatly value my discussions and debates with him.
I would also like to thank all the graduate, undergraduate, and post-doctoral students who have made graduate school not only a time of learning and development, but a time of fun. Over the years I have enjoyed the company of too many lab mates and colleagues to list, which is a tremendous blessing. Victor Rendina, however, has been my best friend since our first year at
Boston College. He is by far one of the most talented chemists I know, both with his hands and with his head. It was a privilege and honor to work with him in lab for so many years, but Victor has also been a rock for me outside of school. When the trials and tribulations of life got unimaginably troubling, he was always there.
There have also been many people outside of the world of science who have supported me and who deserve recognition. My family: my mother, father, grandmother, and brother, have been nothing but encouraging and reassuring not only for the past six years, but also for my whole life. They have invested in my education from a young age, and I hope to continue to make them proud as I complete my schooling and start my career. I would also like to thank Carolyn
Heusser, for opening my heart and eyes, and helping me to put my life in perspective. Her love, compassion, and support have been nothing short of amazing. Lastly, and most importantly, I give continued thanks and gratitude to my creator, who made all of this possible by blessing me with talents and endless opportunities. viii
Abbreviations
[α] specific rotation |ΔE| quadrupole splitting (Mössbauer) δ chemical shift (NMR); isomer shift (Mössbauer) Γ half width at half height Χ magnetic susceptibility Å angstrom Ac acetyl acac acetlacetonyl Ar aryl bm broad medium (IR) Bn benzyl BS broken symmetry bs broad strong (IR) Bu butyl bw broad weak (IR) cal calorie(s) calcd calculated CAAC cyclic alkyl amino carbene CD circular dichroism CDI carbenodiimine (bis(imino)-N-heterocyclic carbene) cod cyclooctadiene conv conversion Cp cyclopentadienyl CSA camphorsulphonic acid d day(s); doublet (NMR) dd doublet of doublets (NMR) ddd doublet of doublet of doublets (NMR) dddd doublet of doublet of doublet of doublets (NMR) DFT density functional theory DIBAL diisobylaluminum hydride Dipp 2,6-diisopropylphenyl ix
DME 1,2-dimethoxyethane DMF N,N-dimethylformamide DMP Dess-Martin periodinane DMS dimethyl sulfide DMSO dimethylsulfoxide dr diastereomeric ratio EC effective concentration EPR electron paramagnetic resonance equiv equivalents(s) ESI+ electrospray ionization (positive ion mode) Et ethyl Fc ferrocene FTIR fourier transfor infrared spectroscopy G giga g gram(s) GC gas chromatography h hour(s) hfac hexafluoroacetlacetone HMDS hexamethyldisilazide HOMO highest occupied molecular orbital HRMS high resolution mass spectrometry Hz hertz IC inhibitory concentration iPr ispropyl J coupling constant in Hz (NMR) k kilo L liter(s) LAH lithium aluminum hydride LDA lithium diisopropylamide LUMO lowest unoccupied molecular orbital M molarity (mol/L); molecular formula (HRMS) m meta x m milli; multiplet (NMR); medium (IR) MAD methylaluminim bis(2,6-di-tert-butyl,4-methylphenoxide) MALDI matrix-assisted laser desorption MAO methylaluminoxane Me methyl Mes 2,4,6-trimethylphenyl MHz megahertz min minute(s) MMAO modified methylaluminoxane mol mole(s) NBS N-bromosuccinimide NCS N-chlorosuccinimide NHC N-heterocyclic carbene NMR nuclear magnetic resonance o ortho ORTEP Oak Ridge thermal ellipsoid plot p para P pentet (NMR) PCC pyridinium chlorochromate PDI pyridyldiimine; polydispersity index PDMS phenyldimethylsilyl PDMSD phenyldimethylsilyldiazomethane Ph phenyl PHOX phosphinooxazoline pin pinacol PLA poly(lactic acid) PMB p-methoxybenzyl PPTS Pyridinium p-toluenesulfonate pyr pyridine q quartet (NMR) s singlet (NMR); strong (IR) S spin xi
SET single electron transfer SFC supercritical fluid chromatography SQUID superconducting quantum interference device t tertiary t triplet (NMR) TBAF tetra-n-butylammonium fluoride TBAI tetra-n-butylammonium iodide TBDPS tert-butyldiphenylsilyl TBS tert-butyldimethylsilyl td triplet of doublets (NMR) Tf trifluoromethanesulfonyl THF tetrahydrofuran TLC thin layers chromatography TMEDA tetramethylethylenediamine TMS trimethylsilyl TMSD trimethylsilyldiazomethane TON turnover number Ts p-toluenesulfonyl v/v volume/volume VT variable temperature w weak (IR) w/w weight/weight ZPE zero point energy
1
Chapter 1
______A General Approach to Cis-Fused Sesquiterpene Quinones ______2
1.1 Introduction
Earth’s biodiverse oceans are a prolific source of small molecule natural products.1 Many of these compounds exhibit structural complexity and interesting biological and pharmacological activities, with potential applications extending far beyond their original functions in marine organisms. Significant attention from the research community has been focused on a class of sesquiterpene quinones bearing an avarane carbon skeleton (Figure 1.1) appended to aromatic subunits in both the quinol and quinone oxidation states. These molecules exhibit antibacterial, antiviral, and anti-inhibitory properties, and the already long list of biological applications continues to grow as more molecules in this family are discovered and studied.2,3
Figure 1.1. Sesquiterpene skeletons.
Well over 100 sesquiterpenes bearing avarane or rearranged-avarane frameworks and quinone subunits have been reported to date.4 Interestingly, many of these molecules belong to one of two diastereomeric subclasses of compounds: those bearing a cis-fused decalin core and their trans-fused counterparts (epimers at C-5, avarane numbering). Among the numerous molecules in the class, the central decalin unit is highyl conserved, and structural diversity is generally limited to the substitution pattern and oxidation about the arene. Some representative natural products are shown in Figure 1.2.
3
Figure 1.2. Selected sesquiterpene quinones.
1.1.1 Isolation and Biological Activity of (–)-ilimaquinone
(–)-Ilimaquinone (1.1) was first isolated in 1987 by Scheuer and coworkers from the marine sponge Hippiospongia metachromia.5,6 Its relative configuration was assigned on the basis of single-crystal X-ray diffraction in conjunction with 1H and 13C NMR spectroscopy and qualitative tests. Absolute stereochemistry, however, was originally established by circular dichroism (CD) measurements. Prompted by the weak magnitude of the CD effect reported by
Scheuer (Δε298 +0.14), Capon and coworkers later reassigned the absolute stereochemistry of (–)- ilimaquione (1.1) on the basis of oxidative and degradative studies (Scheme 1.1).7 A three step sequence consisting of hydrogen peroxide oxidation, esterification, and acid catalyzed rearrangement provided degradation product 1.9. Importantly, ester 1.9 demonstrated an optical