AKR1D1 Variants RESEARCH Differential Activity and Expression of Human 5Β-Reductase (AKR1D1) Splice Variants
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Characterization of a Microsomal Retinol Dehydrogenase Gene from Amphioxus: Retinoid Metabolism Before Vertebrates
Chemico-Biological Interactions 130–132 (2001) 359–370 www.elsevier.com/locate/chembiont Characterization of a microsomal retinol dehydrogenase gene from amphioxus: retinoid metabolism before vertebrates Diana Dalfo´, Cristian Can˜estro, Ricard Albalat, Roser Gonza`lez-Duarte * Departament de Gene`tica, Facultat de Biologia, Uni6ersitat de Barcelona, A6. Diagonal, 645, E-08028, Barcelona, Spain Abstract Amphioxus, a member of the subphylum Cephalochordata, is thought to be the closest living relative to vertebrates. Although these animals have a vertebrate-like response to retinoic acid, the pathway of retinoid metabolism remains unknown. Two different enzyme systems — the short chain dehydrogenase/reductases and the cytosolic medium-chain alcohol dehydrogenases (ADHs) — have been postulated in vertebrates. Nevertheless, recent data show that the vertebrate-ADH1 and ADH4 retinol-active forms originated after the divergence of cephalochordates and vertebrates. Moreover, no data has been gathered in support of medium-chain retinol active forms in amphioxus. Then, if the cytosolic ADH system is absent and these animals use retinol, the microsomal retinol dehydrogenases could be involved in retinol oxidation. We have identified the genomic region and cDNA of an amphioxus Rdh gene as a preliminary step for functional characterization. Besides, phyloge- netic analysis supports the ancestral position of amphioxus Rdh in relation to the vertebrate forms. © 2001 Elsevier Science Ireland Ltd. All rights reserved. Keywords: Retinol dehydrogenase; Retinoid metabolism; Amphioxus * Corresponding author. Fax: +34-93-4110969. E-mail address: [email protected] (R. Gonza`lez-Duarte). 0009-2797/01/$ - see front matter © 2001 Elsevier Science Ireland Ltd. All rights reserved. PII: S0009-2797(00)00261-1 360 D. -
Methionine Sulfoxide Reductase a Is a Stereospecific Methionine Oxidase
Methionine sulfoxide reductase A is a stereospecific methionine oxidase Jung Chae Lim, Zheng You, Geumsoo Kim, and Rodney L. Levine1 Laboratory of Biochemistry, National Heart, Lung, and Blood Institute, Bethesda, MD 20892-8012 Edited by Irwin Fridovich, Duke University Medical Center, Durham, NC, and approved May 10, 2011 (received for review February 10, 2011) Methionine sulfoxide reductase A (MsrA) catalyzes the reduction Results of methionine sulfoxide to methionine and is specific for the S epi- Stoichiometry. Branlant and coworkers have studied in careful mer of methionine sulfoxide. The enzyme participates in defense detail the mechanism of the MsrA reaction in bacteria (17, 18). against oxidative stresses by reducing methionine sulfoxide resi- In the absence of reducing agents, each molecule of MsrA dues in proteins back to methionine. Because oxidation of methio- reduces two molecules of MetO. Reduction of the first MetO nine residues is reversible, this covalent modification could also generates a sulfenic acid at the active site cysteine, and it is function as a mechanism for cellular regulation, provided there reduced back to the thiol by a fast reaction, which generates a exists a stereospecific methionine oxidase. We show that MsrA disulfide bond in the resolving domain of the protein. The second itself is a stereospecific methionine oxidase, producing S-methio- MetO is then reduced and again generates a sulfenic acid at the nine sulfoxide as its product. MsrA catalyzes its own autooxidation active site. Because the resolving domain cysteines have already as well as oxidation of free methionine and methionine residues formed a disulfide, no further reaction forms. -
Taylor Et Al REVISED MS28926-1.Pdf
1 The effect of micronutrient supplementation on growth and hepatic 2 metabolism in diploid and triploid Atlantic salmon (Salmo salar) parr 3 fed a low marine ingredient diet 4 5 John F. Taylor a*, Luisa M. Vera a, Christian De Santis a, Erik-Jan Lock b, Marit Espe b, 6 Kaja H. Skjærven b, Daniel Leeming c, Jorge del Pozo d, Jose Mota-Velasco e, Herve 7 Migaud a, Kristin Hamre b, Douglas R. Tocher a 8 9 a Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK 10 b Institute of Marine Research, PO box 1870 Nordnes, 5817 Bergen, Norway 11 c BioMar Ltd., Grangemouth, FK3 8UL, UK 12 d The Royal (Dick) School of Veterinary Studies, Edinburgh, EH25 9RG, UK 13 e Hendrix Genetics, Landcatch Natural Selection Ltd., Lochgilphead, PA31 8PE, UK 14 15 Running Title: Dietary micronutrient supplementation in Atlantic salmon 16 17 ms. has 31 pg.s, 4 figures, 9 tables, 4 suppl. files 18 19 Corresponding Author: 20 Dr John F. Taylor 21 Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK 22 Tel: +44-01786 467929 ; Fax: +44-01768 472133 23 [email protected] 24 Accepted refereed manuscript of: Taylor JF, Vera LM, De Santis C, Lock E, Espe M, Skjaerven KH, Leeming D, Del Pozo J, Mota-Velasco J, Migaud H, Hamre K & Tocher DR (2019) The effect of micronutrient supplementation on growth and hepatic metabolism in diploid and triploid Atlantic salmon (Salmo salar) parr fed a low marine ingredient diet. Comparative Biochemistry and Physiology. Part B, Biochemistry and Molecular Biology, 227, pp. -
The Identification of Human Aldo-Keto Reductase AKR7A2 As a Novel
Li et al. Cellular & Molecular Biology Letters (2016) 21:25 Cellular & Molecular DOI 10.1186/s11658-016-0026-9 Biology Letters SHORTCOMMUNICATION Open Access The identification of human aldo-keto reductase AKR7A2 as a novel cytoglobin- binding partner Xin Li, Shanshan Zou, Zhen Li, Gaotai Cai, Bohong Chen, Ping Wang and Wenqi Dong* * Correspondence: [email protected] Abstract Department of Biopharmaceutics, School of Laboratory Medicine and Cytoglobin (CYGB), a member of the globin family, is thought to protect cells from Biotechnology, Southern Medical reactive oxygen and nitrogen species and deal with hypoxic conditions and University, 1838 North Guangzhou oxidative stress. However, its molecular mechanisms of action are not clearly Avenue, Guangzhou 510515, China understood. Through immunoprecipitation combined with a two-dimensional electrophoresis–mass spectrometry assay, we identified a CYGB interactor: aldo-keto reductase family 7 member A2 (AKR7A2). The interaction was further confirmed using yeast two-hybrid and co-immunoprecipitation assays. Our results show that AKR7A2 physically interacts with CYGB. Keywords: CYGB, AKR7A2, Protein-protein interactions, Yeast two-hybrid assay, Co-immunoprecipitation, 2-DE, Oxidative stress Introduction Cytoglobin (CYGB), which is a member of the globin family, was discovered more than a decade ago in a proteomic screen of fibrotic liver [1]. It was originally named STAP (stellate activating protein). Human CYGB is a 190-amino acid, 21-kDa protein [2], encoded by a single copy gene mapped at the 17q25.3 chromosomal segment [3]. It has a compact helical conformation, giving it the ability to bind to heme, which allows reversible binding of gaseous, diatomic molecules, including oxygen (O2), nitric oxide (NO) and carbon monoxide (CO), just like hemoglobin (Hb), myoglobin (Mb) and neuroglobin (Ngb) [4]. -
A Brief Guide to Enzyme Classification and Nomenclature Rev AM
A Brief Guide to Enzyme Nomenclature and Classification Keith Tipton and Andrew McDonald 1) Introduction NC-IUBMB Enzyme List, or, to give it its full title, “Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes by the Reactions they Catalyse,1 is a functional system, based solely on the substrates transformed and products formed by an enzyme. The basic layout of the classification for each enzyme is described below with some indication of the guidelines followed. More detailed rules for enzyme nomenclature and classification are available online.2 Further details of the principles governing the nomenclature of individual enzyme classes are given in the following sections. 2. Basic Concepts 2.1. EC numbers Enzymes are identified by EC (Enzyme Commission) numbers. These are also valuable for relating the information to other databases. They were divided into 6 major classes according to the type of reaction catalysed and a seventh, the translocases, was added in 2018.3 These are shown in Table 1. Table 1. Enzyme classes Name Reaction catalysed 1 Oxidoreductases *AH2 + B = A +BH2 2 Transferases AX + B = BX + A 3 Hydrolases A-B + H2O = AH + BOH 4 Lyases A=B + X-Y = A-B ç ç X Y 5 Isomerases A = B 6 LiGases †A + B + NTP = A-B + NDP + P (or NMP + PP) 7 Translocases AX + B çç = A + X + ççB (side 1) (side 2) *Where nicotinamide-adenine dinucleotides are the acceptors, NAD+ and NADH + H+ are used, by convention. †NTP = nucleoside triphosphate. The EC number is made up of four components separated by full stops. -
SELENOF) with Retinol Dehydrogenase 11 (RDH11
Tian et al. Nutrition & Metabolism (2018) 15:7 DOI 10.1186/s12986-017-0235-x RESEARCH Open Access The interaction of selenoprotein F (SELENOF) with retinol dehydrogenase 11 (RDH11) implied a role of SELENOF in vitamin A metabolism Jing Tian1* , Jiapan Liu1, Jieqiong Li2, Jingxin Zheng3, Lifang Chen4, Yujuan Wang1, Qiong Liu1 and Jiazuan Ni1 Abstract Background: Selenoprotein F (SELENOF, was named as 15-kDa selenoprotein) has been reported to play important roles in oxidative stress, endoplasmic reticulum (ER) stress and carcinogenesis. However, the biological function of SELENOF is still unclear. Methods: A yeast two-hybrid system was used to screen the interactive protein of SELENOF in a human fetal brain cDNA library. The interaction between SELENOF and interactive protein was validated by fluorescence resonance energy transfer (FRET), co-immunoprecipitation (co-IP) and pull-down assays. The production of retinol was detected by high performance liquid chromatograph (HPLC). Results: Retinol dehydrogenase 11 (RDH11) was found to interact with SELENOF. RDH11 is an enzyme for the reduction of all-trans-retinaldehyde to all-trans-retinol (vitamin A). The production of retinol was decreased by SELENOF overexpression, resulting in more retinaldehyde. Conclusions: SELENOF interacts with RDH11 and blocks its enzyme activity to reduce all-trans-retinaldehyde. Keywords: SELENOF (Seleonoprotein F) , Yeast two hybrid system, Protein-protein interaction, Retinol dehydrogenase 11 (RDH11), Fluorescence resonance energy transfer (FRET), Co-immunoprecipitation (co-IP), Pull- down, Retinol (vitamin a), Retinaldehyde Background SELENOF shows that the protein contains a Selenium (Se) is a necessary trace element for human thioredoxin-like motif. The redox potential of this motif health. -
Drug Metabolism Chemical and Enzymatic Aspects Textbook Edition
DRUG METABOLISM Chemical and Enzymatic Aspects TEXTBOOK EDITION Jack P. Uetrecht University of Toronto Ontario, Canada William Trager University of Washington Seattle, Washington, USA Uetrecht_978-1420061031_TP.indd 2 5/11/07 2:28:26 PM OTE/SPH OTE/SPH uetrecht IHUS001-Uetrecht May 10, 2007 3:29 Char Count= Informa Healthcare USA, Inc. 52 Vanderbilt Avenue New York, NY 10017 C 2007 by Informa Healthcare USA, Inc. Informa Healthcare is an Informa business No claim to original U.S. Government works Printed in the United States of America on acid-free paper 10987654321 International Standard Book Number-10: 1-4200-6103-8 International Standard Book Number-13: 978-1-4200-6103-1 This book contains information obtained from authentic and highly regarded sources. Reprinted material is quoted with permission, and sources are indicated. A wide variety of references are listed. Reasonable efforts have been made to publish reliable data and information, but the author and the publisher cannot assume responsibility for the validity of all materials or for the consequence of their use. No part of this book may be reprinted, reproduced, transmitted, or utilized in any form by any electronic, mechan- ical, or other means, now known or hereafter invented, including photocopying, microfilming, and recording, or in any information storage or retrieval system, without written permission from the publishers For permission to photocopy or use material electronically from this work, please access www.copyright.com (http://www.copyright.com/) or contact the Copyright Clearance Center, Inc. (CCC) 222 Rosewood Drive, Danvers, MA 01923, 978-750-8400. CCC is a not-for-profit organization that provides licenses and registra- tion for a variety of users. -
Pyruvate Ferredoxin Oxidoreductase from the Hyperthermophilic
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 9608–9613, September 1997 Biochemistry Pyruvate ferredoxin oxidoreductase from the hyperthermophilic archaeon, Pyrococcus furiosus, functions as a CoA-dependent pyruvate decarboxylase (archaeayaldehydeydecarboxylationy2-keto acidythiamine pyrophosphate) KESEN MA*, ANDREA HUTCHINS*, SHI-JEAN S. SUNG†, AND MICHAEL W. W. ADAMS*‡ *Center for Metalloenzyme Studies, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602; and †Institute of Tree Root Biology, U.S. Department of Agriculture–Forest Service, Athens, GA 30602 Communicated by Gregory A. Petsko, Brandeis University, Waltham, MA, June 17, 1997 (received for review June 1, 1996) ABSTRACT Pyruvate ferredoxin oxidoreductase (POR) hyperthermophilic archaea and these are involved in peptide has been previously purified from the hyperthermophilic fermentation. They use 2-ketoglutarate (KGOR) (11), in- archaeon, Pyrococcus furiosus, an organism that grows opti- dolepyruvate (IOR) (12), and 2-ketoisovalerate (VOR) (13) as mally at 100°C by fermenting carbohydrates and peptides. The substrates, and function to oxidatively decarboxylate the 2- enzyme contains thiamine pyrophosphate and catalyzes the keto acids generated by the transamination of glutamate, oxidative decarboxylation of pyruvate to acetyl-CoA and CO2 aromatic amino acids, and branched chain amino acids, re- and reduces P. furiosus ferredoxin. Here we show that this spectively, to the corresponding CoA derivative (13). enzyme also catalyzes the formation of acetaldehyde from The growth of hyperthermophilic archaea such as P. furiosus pyruvate in a CoA-dependent reaction. Desulfocoenzyme A is also unusual in that it is dependent upon tungsten (14), a substituted for CoA showing that the cofactor plays a struc- metal seldom used in biological systems (15). -
A Nitrogenase-Like Methylthio-Alkane Reductase Complex Catalyzes Anaerobic Methane, Ethylene, and Methionine Biosynthesis Justin A
A Nitrogenase-like Methylthio-alkane Reductase Complex Catalyzes Anaerobic Methane, Ethylene, and Methionine Biosynthesis Justin A. North,1 Srividya Murali1* ([email protected]), Adrienne B. Narrowe,3 Weili Xiong,4 Kathryn M. Byerly,1 Sarah J. Young,1 Yasuo Yoshikuni,5 Sean McSweeney,6 Dale Kreitler,6 William R. Cannon,2 Kelly C. Wrighton,3 Robert L. Hettich,4 and F. Robert Tabita1 (former PI, deceased) 1Department of Microbiology, The Ohio State University, Columbus, OH; 2Pacific Northwest National Laboratory, Richland, WA. 3Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO; 4Chemical Sciences Division, ORNL, Oak Ridge, TN; 5DOE Joint Genome Institute, Berkeley, CA; 6NSLS-II, Brookhaven National Laboratory, Upton, NY. Project Goals: The goal of this project is to identify and characterize the specific enzyme(s) that catalyze anaerobic ethylene synthesis. This is part of a larger project to develop an industrially compatible microbial process to synthesize ethylene in high yields. The specific goals are: 1. Identify the genes and gene products responsible for anaerobic ethylene synthesis. 2. Probe the substrate specificity and metagenomic functional diversity of methylthio-alkane reductases to identify optimal bioproduct generating systems. 3. Characterize the enzymes and the reactions that directly generate anaerobic ethylene. Abstract Text: Our previous work identified a novel anaerobic microbial pathway (DHAP- Ethylene Shunt) [1] that recycled 5’-methylthioadenosine (MTA) back to methionine with stoichiometric amounts of ethylene produced as a surprising side-product. MTA is a metabolic byproduct of methionine utilization in a multitude of cellular processes. The initial steps of the DHAP-ethylene sequentially converts MTA to dihydroxyacetone phosphate (DHAP) and ethylene precursor (2-methylthio)ethanol (Fig. -
Important Roles of the AKR1C2 and SRD5A1 Enzymes in Progesterone
Chemico-Biological Interactions xxx (2014) xxx–xxx Contents lists available at ScienceDirect Chemico-Biological Interactions journal homepage: www.elsevier.com/locate/chembioint Important roles of the AKR1C2 and SRD5A1 enzymes in progesterone metabolism in endometrial cancer model cell lines ⇑ Maša Sinreih a, Maja Anko a, Sven Zukunft b, Jerzy Adamski b,c,d, Tea Lanišnik Rizˇner a, a Institute of Biochemistry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia b Institute of Experimental Genetics, Genome Analysis Centre, Helmholtz Zentrum München, München, Germany c Lehrstuhl für Experimentelle Genetik, Technische Universität München, 85356 Freising-Weihenstephan, Germany d German Centre for Diabetes Research, 85764 Neuherberg, Germany article info abstract Article history: Endometrial cancer is the most frequently diagnosed gynecological malignancy. It is associated with Available online xxxx prolonged exposure to estrogens that is unopposed by progesterone, whereby enhanced metabolism of progesterone may decrease its protective effects, as it can deprive progesterone receptors of their active Keywords: ligand. Furthermore, the 5a-pregnane metabolites formed can stimulate proliferation and may thus 3-Keto/20-keto-reductases contribute to carcinogenesis. The aims of our study were to: (1) identify and quantify progesterone 5a-Reductases metabolites formed in the HEC-1A and Ishikawa model cell lines of endometrial cancer; and (2) pinpoint Pre-receptor metabolism the enzymes involved in progesterone metabolism, and delineate their roles. Progesterone metabolism 5a-Pregnanes studies combined with liquid chromatography–tandem mass spectrometry enabled identification and 4-Pregnenes quantification of the metabolites formed in these cells. Further quantitative PCR analysis and small-inter- fering-RNA-mediated gene silencing identified individual progesterone metabolizing enzymes and their relevant roles. -
Expression Analysis of Aldo-Keto Reductase 1 (AKR1) in Foxtail Millet (Setaria Italica L.) Subjected to Abiotic Stresses
American Journal of Plant Sciences, 2016, 7, 500-509 Published Online March 2016 in SciRes. http://www.scirp.org/journal/ajps http://dx.doi.org/10.4236/ajps.2016.73044 Expression Analysis of Aldo-Keto Reductase 1 (AKR1) in Foxtail Millet (Setaria italica L.) Subjected to Abiotic Stresses Tanguturi Venkata Kirankumar, Kalaiahgari Venkata Madhusudhan, Ambekar Nareshkumar, Kurnool Kiranmai, Uppala Lokesh, Boya Venkatesh, Chinta Sudhakar* Plant Molecular Biology Laboratory, Department of Botany, Sri Krishnadevaraya University, Anantapuramu, India Received 4 February 2016; accepted 18 March 2016; published 21 March 2016 Copyright © 2016 by authors and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/ Abstract Foxtail millet (Setaria italica L.) is a drought-tolerant millet crop of arid and semi-arid regions. Aldo-keto reductases (AKRs) are significant part of plant defence mechanism, having an ability to confer multiple stress tolerance. In this study, AKR1 gene expression was studied in roots and leaves of foxtail millet subjected to different regimes of PEG- and NaCl-stress for seven days. The quantita- tive Real-time PCR expression analysis in both root and leaves showed upregulation of AKR1 gene during PEG and salt stress. A close correlation exits between expression of AKR1 gene and the rate of lipid peroxidation along with the retardation of growth. Tissue-specific differences were found in the AKR1 gene expression to the stress intensities studied. The reduction in root and shoot growth under both stress conditions were dependent on stress severity. The level of lipid peroxidation as indicated by MDA formation was significantly increased in roots and leaves along with increased stress levels. -
Aldo-Keto Reductase 1C1 (AKR1C1) As the First Mutated Gene in a Family with Nonsyndromic Primary Lipedema
International Journal of Molecular Sciences Article Aldo-Keto Reductase 1C1 (AKR1C1) as the First Mutated Gene in a Family with Nonsyndromic Primary Lipedema Sandro Michelini 1 , Pietro Chiurazzi 2,3, Valerio Marino 4 , Daniele Dell’Orco 4 , Elena Manara 5 , Mirko Baglivo 5, Alessandro Fiorentino 1, Paolo Enrico Maltese 6 , Michele Pinelli 7,8 , Karen Louise Herbst 9, Astrit Dautaj 10 and Matteo Bertelli 5,10,* 1 Dipartimento di Riabilitazione, Ospedale San Giovanni Battista, A.C.I.S.M.O.M., 00148 Rome, Italy; [email protected] (S.M.); a.fi[email protected] (A.F.) 2 Istituto di Medicina Genomica, Università Cattolica del Sacro Cuore, 00168 Rome, Italy; [email protected] 3 Fondazione Policlinico Universitario “A.Gemelli” IRCCS, UOC Genetica Medica, 00168 Rome, Italy 4 Dipartimento di Neuroscienze, Biomedicina e Movimento, Sezione di Chimica Biologica, Università di Verona, 37134 Verona, Italy; [email protected] (V.M.); [email protected] (D.D.) 5 MAGI Euregio, 39100 Bolzano, Italy; [email protected] (E.M.); [email protected] (M.B.) 6 MAGI’s LAB, 38068 Rovereto, Italy; [email protected] 7 Dipartimento di Scienze Mediche Traslazionali, Sezione di Pediatria, Università di Napoli Federico II, 80131 Naples, Italy; [email protected] 8 Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli, Italy 9 Departments of Medicine, Pharmacy, Medical Imaging, Division of Endocrinology, University of Arizona, Tucson, AZ 85721, USA; [email protected] 10 EBTNA-Lab, 38068 Rovereto, Italy; [email protected] * Correspondence: [email protected] Received: 20 July 2020; Accepted: 27 August 2020; Published: 29 August 2020 Abstract: Lipedema is an often underdiagnosed chronic disorder that affects subcutaneous adipose tissue almost exclusively in women, which leads to disproportionate fat accumulation in the lower and upper body extremities.