A Student's Guide to Common Phytoplankton of Long Island Sound
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A New Type of Plankton Food Web Functioning in Coastal Waters Revealed by Coupling Monte Carlo Markov Chain Linear Inverse Metho
A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, Aurélie Chaalali, Olivier Pringault, Asma Sakka Hlaili To cite this version: Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, et al.. A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis. Ecological Indicators, Elsevier, 2019, 104, pp.67-85. 10.1016/j.ecolind.2019.04.077. hal-02146355 HAL Id: hal-02146355 https://hal.archives-ouvertes.fr/hal-02146355 Submitted on 3 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 A new type of plankton food web functioning in coastal waters revealed by coupling 2 Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis 3 4 5 Marouan Meddeba,b*, Nathalie Niquilc, Boutheïna Gramia,d, Kaouther Mejria,b, Matilda 6 Haraldssonc, Aurélie Chaalalic,e,f, Olivier Pringaultg, Asma Sakka Hlailia,b 7 8 aUniversité de Carthage, Faculté des Sciences de Bizerte, Laboratoire de phytoplanctonologie 9 7021 Zarzouna, Bizerte, Tunisie. -
Destabilization, Stabilization, and Multiple Attractors in Saturated Mixotrophic Environments
Downloaded from orbit.dtu.dk on: Sep 27, 2021 Destabilization, stabilization, and multiple attractors in saturated mixotrophic environments Lindstrom, Torsten; Cheng, Yuanji; Chakraborty, Subhendu Published in: SIAM Journal on Applied Mathematics Link to article, DOI: 10.1137/19M1294186 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Lindstrom, T., Cheng, Y., & Chakraborty, S. (2020). Destabilization, stabilization, and multiple attractors in saturated mixotrophic environments. SIAM Journal on Applied Mathematics, 80(6), 2338-2364. https://doi.org/10.1137/19M1294186 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. SIAM J. APPL.MATH. © 2020 Society for Industrial and Applied Mathematics Vol. 80, No. 6, pp. 2338{2364 DESTABILIZATION, STABILIZATION, AND MULTIPLE ATTRACTORS IN SATURATED MIXOTROPHIC ENVIRONMENTS\ast \" y z x TORSTEN LINDSTROM , YUANJI CHENG , AND SUBHENDU CHAKRABORTY Abstract. The ability of mixotrophs to combine phototrophy and phagotrophy is now well recognized and found to have important implications for ecosystem dynamics. -
Akashiwo Sanguinea
Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
Check List 15 (5): 951–963
15 5 ANNOTATED LIST OF SPECIES Check List 15 (5): 951–963 https://doi.org/10.15560/15.5.951 Dinoflagellates in tropical estuarine waters from the Maraú River, Camamu Bay, northeastern Brazil Caio Ceza da Silva Nunes1, Sylvia Maria Moreira Susini-Ribeiro1, 2, Kaoli Pereira Cavalcante3 1 Mestrado em Sistemas Aquáticos Tropicais, Universidade Estadual de Santa Cruz, Rodovia Jorge Amado, km 16, Salobrinho, 45662090 Ilhéus, BA, Brazil. 2 Universidade Estadual de Santa Cruz, Rodovia Jorge Amado, km 16, Salobrinho, 45662090 Ilhéus, BA, Brazil. 3 Universidade Estadual Vale do Acaraú, Avenida da Universidade, 850, Campus da Betânia, Betânia, 62040370, Sobral, CE, Brazil. Corresponding author: Caio Ceza da Silva Nunes, [email protected] Abstract Dinoflagellates display great diversity in tropical regions and play an important role in the complex microbial food webs of marine and brackish environments. The goal of this study is to identify planktonic dinoflagellates and their distribution in the estuary of the Maraú River, Camamu Bay, state of Bahia, in a region with increasing use of shellfish farming. Samples were carried out monthly from August 2006 to July 2007 at four stations along the estuary. Plankton was sampled with a 20 μm mesh net. We identified 20 dinoflagellate species. The greatest species richness was ob- served in the genera Protoperidinium (five spp.), Tripos (four spp.), and Prorocentrum (three spp.). Based on literature, six species were classified as potentially harmful: Akashiwo sanguinea, Dinophysis caudata, Gonyaulax spinifera, Prorocentrum micans, Scrippsiella cf. acuminata, and Tripos furca. Protoperidinium venustum was recorded for the first time in coastal waters of Bahia. Keywords Brackish water, Dinophyta, distribution, potentially harmful species, taxonomy. -
Bioenergetics of Mixotrophic Metabolisms: a Theoretical Analysis
Bioenergetics of mixotrophic metabolisms: A theoretical analysis by Stephanie Slowinski A thesis presented to the University of Waterloo in fulfillment of the thesis requirement for the degree of Master of Science in Earth Sciences (Water) Waterloo, Ontario, Canada, 2019 © Stephanie Slowinski 2019 Author’s Declaration This thesis consists of material all of which I authored or co-authored: see Statement of Contributions included in the thesis. This is a true copy of the thesis, including any required final revisions, as accepted by my examiners. I understand that my thesis may be made electronically available to the public. ii Statement of Contributions This thesis consists of two co-authored chapters. I contributed to the study design and execution in chapters 2 and 3. Christina M. Smeaton (CMS) and Philippe Van Cappellen (PVC) provided guidance during the study design and analysis. I co-authored both of these chapters with CMS and PVC. iii Abstract Many biogeochemical reactions controlling surface water and groundwater quality, as well as greenhouse gas emissions and carbon turnover rates, are catalyzed by microorganisms. Representing the thermodynamic (or bioenergetic) constraints on the reduction-oxidation reactions carried out by microorganisms in the subsurface is essential to understand and predict how microbial activity affects the environmental fate and transport of chemicals. While organic compounds are often considered to be the primary electron donors (EDs) in the subsurface, many microorganisms use inorganic EDs and are capable of autotrophic carbon fixation. Furthermore, many microorganisms and communities are likely capable of mixotrophy, switching between heterotrophic and autotrophic metabolisms according to the environmental conditions and energetic substrates available to them. -
Planktonic Algal Blooms from 2000 to 2015 in Acapulco
125: 61-93 October 2018 Research article Planktonic algal blooms from 2000 to 2015 in Acapulco Bay, Guerrero, Mexico Florecimientos de microalgas planctónicas de 2000 al 2015 en la Bahía de Acapulco, Guerrero, México María Esther Meave del Castillo1,2 , María Eugenia Zamudio-Resendiz1 ABSTRACT: 1 Universidad Autónoma Metro- Background and Aims: Harmful algal blooms (HABs) affect the marine ecosystem in multiple ways. The politana, Unidad Iztapalapa, De- objective was to document the species that produced blooms in Acapulco Bay over a 15-year period (2000- partamento de Hidrobiología, La- boratorio de Fitoplancton Marino 2015) and analyze the presence of these events with El Niño-Southern Oscillation (ENSO). y Salobre, Av. San Rafael Atlixco Methods: Thirty-five collections, made during the years 2000, 2002-2004, 2006-2011, 2013-2015, were 186, Col. Vicentina, Iztapalapa, undertaken with phytoplankton nets and Van Dorn bottle, yielding 526 samples, of which 423 were quanti- 09340 Cd. Mx., México. fied using the Utermöhl method. The relationship of HAB with ENSO was made with standardized values 2 Author for correspondence: of Multivariate ENSO Index (MEI) and the significance was evaluated with the method quadrant sums of [email protected] Olmstead-Tukey. Key results: Using data of cell density and high relative abundance (>60%), 53 blooms were recorded, most Received: November 21, 2017. of them occurring during the rainy season (June-October) and dry-cold season (November-March), plus 37 Reviewed: January 10, 2018. blooms reported by other authors. These 90 blooms were composed of 40 taxa: 21 diatoms and 19 dinoflagel- Accepted: April 6, 2018. -
Phytoplankton As Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate
sustainability Review Phytoplankton as Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate Samarpita Basu * ID and Katherine R. M. Mackey Earth System Science, University of California Irvine, Irvine, CA 92697, USA; [email protected] * Correspondence: [email protected] Received: 7 January 2018; Accepted: 12 March 2018; Published: 19 March 2018 Abstract: The world’s oceans are a major sink for atmospheric carbon dioxide (CO2). The biological carbon pump plays a vital role in the net transfer of CO2 from the atmosphere to the oceans and then to the sediments, subsequently maintaining atmospheric CO2 at significantly lower levels than would be the case if it did not exist. The efficiency of the biological pump is a function of phytoplankton physiology and community structure, which are in turn governed by the physical and chemical conditions of the ocean. However, only a few studies have focused on the importance of phytoplankton community structure to the biological pump. Because global change is expected to influence carbon and nutrient availability, temperature and light (via stratification), an improved understanding of how phytoplankton community size structure will respond in the future is required to gain insight into the biological pump and the ability of the ocean to act as a long-term sink for atmospheric CO2. This review article aims to explore the potential impacts of predicted changes in global temperature and the carbonate system on phytoplankton cell size, species and elemental composition, so as to shed light on the ability of the biological pump to sequester carbon in the future ocean. -
Fertilizing the Ocean with Iron Is This a Viable Way to Help Reduce Carbon Dioxide Levels in the Atmosphere?
380 Fertilizing the Ocean with Iron Is this a viable way to help reduce carbon dioxide levels in the atmosphere? 360 ive me half a tanker of iron, and I’ll give you an ice Twenty years on, Martin’s line is still viewed alternately age” may rank as the catchiest line ever uttered by a as a boast or a quip—an opportunity too good to pass up or a biogeochemist.“G The man responsible was the late John Martin, misguided remedy doomed to backfire. Yet over the same pe- former director of the Moss Landing Marine Laboratory, who riod, unrelenting increases in carbon emissions and mount- discovered that sprinkling iron dust in the right ocean waters ing evidence of climate change have taken the debate beyond could trigger plankton blooms the size of a small city. In turn, academic circles and into the free market. the billions of cells produced might absorb enough heat-trap- Today, policymakers, investors, economists, environ- ping carbon dioxide to cool the Earth’s warming atmosphere. mentalists, and lawyers are taking notice of the idea. A few Never mind that Martin companies are planning new, was only half serious when larger experiments. The ab- 340 he made the remark (in his Ocean Iron Fertilization sence of clear regulations for “best Dr. Strangelove accent,” either conducting experiments he later recalled) at an infor- An argument for: Faced with the huge at sea or trading the results mal seminar at Woods Hole consequences of climate change, iron’s in “carbon offset” markets Oceanographic Institution outsized ability to put carbon into the oceans complicates the picture. -
Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun
OCEANOGRAPHY – Vol.II - Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun BIOLOGICAL OCEANOGRAPHY Legendre, Louis and Rassoulzadegan, Fereidoun Laboratoire d'Océanographie de Villefranche, France. Keywords: Algae, allochthonous nutrient, aphotic zone, autochthonous nutrient, Auxotrophs, bacteria, bacterioplankton, benthos, carbon dioxide, carnivory, chelator, chemoautotrophs, ciliates, coastal eutrophication, coccolithophores, convection, crustaceans, cyanobacteria, detritus, diatoms, dinoflagellates, disphotic zone, dissolved organic carbon (DOC), dissolved organic matter (DOM), ecosystem, eukaryotes, euphotic zone, eutrophic, excretion, exoenzymes, exudation, fecal pellet, femtoplankton, fish, fish lavae, flagellates, food web, foraminifers, fungi, harmful algal blooms (HABs), herbivorous food web, herbivory, heterotrophs, holoplankton, ichthyoplankton, irradiance, labile, large planktonic microphages, lysis, macroplankton, marine snow, megaplankton, meroplankton, mesoplankton, metazoan, metazooplankton, microbial food web, microbial loop, microheterotrophs, microplankton, mixotrophs, mollusks, multivorous food web, mutualism, mycoplankton, nanoplankton, nekton, net community production (NCP), neuston, new production, nutrient limitation, nutrient (macro-, micro-, inorganic, organic), oligotrophic, omnivory, osmotrophs, particulate organic carbon (POC), particulate organic matter (POM), pelagic, phagocytosis, phagotrophs, photoautotorphs, photosynthesis, phytoplankton, phytoplankton bloom, picoplankton, plankton, -
SSWIMS: Plankton
Unit Six SSWIMS/Plankton Unit VI Science Standards with Integrative Marine Science-SSWIMS On the cutting edge… This program is brought to you by SSWIMS, a thematic, interdisciplinary teacher training program based on the California State Science Content Standards. SSWIMS is provided by the University of California Los Angeles in collaboration with the Los Angeles County school districts, including the Los Angeles Unified School District. SSWIMS is funded by a major grant from the National Science Foundation. Plankton Lesson Objectives: Students will be able to do the following: • Determine a basis for plankton classification • Differentiate between various plankton groups • Compare and contrast plankton adaptations for buoyancy Key concepts: phytoplankton, zooplankton, density, diatoms, dinoflagellates, holoplankton, meroplankton Plankton Introduction “Plankton” is from a Greek word for food chains. They are autotrophs, “wanderer.” It is a making their own food, using the collective term for process of photosynthesis. The the various animal plankton or zooplankton eat organisms that drift or food for energy. These swim weakly in the heterotrophs feed on the open water of the sea or microscopic freshwater lakes and ponds. These world of the weak swimmers, carried about by sea and currents, range in size from the transfer tiniest microscopic organisms to energy up much larger animals such as the food jellyfish. pyramid to fishes, marine mammals, and humans. Plankton can be divided into two large groups: planktonic plants and Scientists are interested in studying planktonic animals. The plant plankton, because they are the basis plankton or phytoplankton are the for food webs in both marine and producers of ocean and freshwater freshwater ecosystems. -
Morphological and Transcriptomic Evidence for Ammonium Induction of Sexual Reproduction in Thalassiosira Pseudonana and Other Centric Diatoms
RESEARCH ARTICLE Morphological and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira pseudonana and other centric diatoms Eric R. Moore1, Briana S. Bullington1, Alexandra J. Weisberg2, Yuan Jiang3, Jeff Chang2, Kimberly H. Halsey1* 1 Department of Microbiology, Oregon State University, Corvallis, Oregon, United States of America, 2 Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of a1111111111 America, 3 Department of Statistics, Oregon State University, Corvallis, Oregon, United States of America a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 Abstract The reproductive strategy of diatoms includes asexual and sexual phases, but in many spe- cies, including the model centric diatom Thalassiosira pseudonana, sexual reproduction has OPEN ACCESS never been observed. Furthermore, the environmental factors that trigger sexual reproduc- Citation: Moore ER, Bullington BS, Weisberg AJ, tion in diatoms are not understood. Although genome sequences of a few diatoms are avail- Jiang Y, Chang J, Halsey KH (2017) Morphological able, little is known about the molecular basis for sexual reproduction. Here we show that and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira ammonium reliably induces the key sexual morphologies, including oogonia, auxospores, pseudonana and other centric diatoms. PLoS ONE and spermatogonia, in two strains of T. pseudonana, T. weissflogii, and Cyclotella cryptica. 12(7): e0181098. https://doi.org/10.1371/journal. RNA sequencing revealed 1,274 genes whose expression patterns changed when T. pseu- pone.0181098 donana was induced into sexual reproduction by ammonium. Some of the induced genes Editor: Douglas A. Campbell, Mount Allison are linked to meiosis or encode flagellar structures of heterokont and cryptophyte algae.