A Peculiar Faunivorous Metatherian from the Early Eocene of Australia
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Evolution of the Patellar Sesamoid Bone in Mammals
A peer-reviewed version of this preprint was published in PeerJ on 21 March 2017. View the peer-reviewed version (peerj.com/articles/3103), which is the preferred citable publication unless you specifically need to cite this preprint. Samuels ME, Regnault S, Hutchinson JR. 2017. Evolution of the patellar sesamoid bone in mammals. PeerJ 5:e3103 https://doi.org/10.7717/peerj.3103 Evolution of the patellar sesamoid bone in mammals Mark E Samuels 1, 2 , Sophie Regnault 3 , John R Hutchinson Corresp. 3 1 Department of Medicine, University of Montreal, Montreal, Quebec, Canada 2 Centre de Recherche du CHU Ste-Justine, Montreal, Quebec, Canada 3 Structure & Motion Laboratory, Department of Comparative Biomedical Sciences, The Royal Veterinary College, Hatfield, Hertfordshire, United Kingdom Corresponding Author: John R Hutchinson Email address: [email protected] The patella is a sesamoid bone located in the major extensor tendon of the knee joint, in the hindlimb of many tetrapods. Although numerous aspects of knee morphology are ancient and conserved among most tetrapods, the evolutionary occurrence of an ossified patella is highly variable. Among extant (crown clade) groups it is found in most birds, most lizards, the monotreme mammals and almost all placental mammals, but it is absent in most marsupial mammals as well as many reptiles. Here we integrate data from the literature and first-hand studies of fossil and recent skeletal remains to reconstruct the evolution of the mammalian patella. We infer that bony patellae most likely evolved between four to six times in crown group Mammalia: in monotremes, in the extinct multituberculates, in one or more stem-mammal genera outside of therian or eutherian mammals, and up to three times in therian mammals. -
A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology
JOURNAL OF MORPHOLOGY 277:1469–1485 (2016) A Three-Dimensional Morphometric Analysis of Upper Forelimb Morphology in the Enigmatic Tapir (Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology Jamie A. MacLaren1* and Sandra Nauwelaerts1,2 1Department of Biology, Universiteit Antwerpen, Building D, Campus Drie Eiken, Universiteitsplein, Wilrijk, Antwerp 2610, Belgium 2Centre for Research and Conservation, Koninklijke Maatschappij Voor Dierkunde (KMDA), Koningin Astridplein 26, Antwerp 2018, Belgium ABSTRACT Forelimb morphology is an indicator for order Perissodactyla (odd-toed ungulates). Modern terrestrial locomotor ecology. The limb morphology of the tapirs are widely accepted to belong to a single enigmatic tapir (Perissodactyla: Tapirus) has often been genus (Tapirus), containing four extant species compared to that of basal perissodactyls, despite the lack (Hulbert, 1973; Ruiz-Garcıa et al., 1985) and sev- of quantitative studies comparing forelimb variation in eral regional subspecies (Padilla and Dowler, 1965; modern tapirs. Here, we present a quantitative assess- ment of tapir upper forelimb osteology using three- Wilson and Reeder, 2005): the Baird’s tapir (T. dimensional geometric morphometrics to test whether bairdii), lowland tapir (T. terrestris), mountain the four modern tapir species are monomorphic in their tapir (T. pinchaque), and the Malayan tapir (T. forelimb skeleton. The shape of the upper forelimb bones indicus). Extant tapirs primarily inhabit tropical across four species (T. indicus; T. bairdii; T. terrestris; T. rainforest, with some populations also occupying pinchaque) was investigated. Bones were laser scanned wet grassland and chaparral biomes (Padilla and to capture surface morphology and 3D landmark analysis Dowler, 1965; Padilla et al., 1996). was used to quantify shape. -
A Species-Level Phylogenetic Supertree of Marsupials
J. Zool., Lond. (2004) 264, 11–31 C 2004 The Zoological Society of London Printed in the United Kingdom DOI:10.1017/S0952836904005539 A species-level phylogenetic supertree of marsupials Marcel Cardillo1,2*, Olaf R. P. Bininda-Emonds3, Elizabeth Boakes1,2 and Andy Purvis1 1 Department of Biological Sciences, Imperial College London, Silwood Park, Ascot SL5 7PY, U.K. 2 Institute of Zoology, Zoological Society of London, Regent’s Park, London NW1 4RY, U.K. 3 Lehrstuhl fur¨ Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising-Weihenstephan, Germany (Accepted 26 January 2004) Abstract Comparative studies require information on phylogenetic relationships, but complete species-level phylogenetic trees of large clades are difficult to produce. One solution is to combine algorithmically many small trees into a single, larger supertree. Here we present a virtually complete, species-level phylogeny of the marsupials (Mammalia: Metatheria), built by combining 158 phylogenetic estimates published since 1980, using matrix representation with parsimony. The supertree is well resolved overall (73.7%), although resolution varies across the tree, indicating variation both in the amount of phylogenetic information available for different taxa, and the degree of conflict among phylogenetic estimates. In particular, the supertree shows poor resolution within the American marsupial taxa, reflecting a relative lack of systematic effort compared to the Australasian taxa. There are also important differences in supertrees based on source phylogenies published before 1995 and those published more recently. The supertree can be viewed as a meta-analysis of marsupial phylogenetic studies, and should be useful as a framework for phylogenetically explicit comparative studies of marsupial evolution and ecology. -
Aptian–Albian) of Texas and Oklahoma
Reappraisal of the tribosphenidan mammals from the Trinity Group (Aptian–Albian) of Texas and Oklahoma BRIAN M. DAVIS and RICHARD L. CIFELLI Davis, B.M. and Cifelli, R.L. 2011. Reappraisal of the tribosphenidan mammals from the Trinity Group (Aptian–Albian) of Texas and Oklahoma. Acta Palaeontologica Polonica 56 (3): 441–462. The Trinity therians have long been the focus of attempts to reconstruct the evolutionary history of higher mammals, es− pecially in the context of the development of tribospheny. In this paper, we update the taxonomy of the tribosphenidan taxa known from the Trinity Group and establish with more confidence the premolar/molar count in each. Many isolated specimens can be referred to a specific tooth locus. Additional diversity is revealed within the Deltatheroida, with the de− scription of an additional species of Oklatheridium; Pappotherium is here considered a likely metatherian based on the in− ferred presence of four molars, while Holoclemensia is a basal eutherian (the opposite of some traditional interpretations). The remainder of the genera, Kermackia and Slaughteria, cannot be allied with either of the living groups of tribo− sphenidan mammals using the available data. We identify strong morphological diversity within this assemblage of stem taxa, including modifications to the traditional tribosphenic occlusal pattern in Kermackia. Mammalian evolution at the base of the tribosphenidan radiation was complex, and this underscores the need for caution when interpreting the mor− phology and relationships of taxa known by incomplete material. Key words: Tribosphenida, Metatheria, Eutheria, Deltatheroida, Trinity Group, Early Cretaceous. Brian M. Davis [[email protected]] and Richard L. Cifelli [[email protected]], Department of Zoology and Sam Noble Oklahoma Museum of Natural History, University of Oklahoma, 2401 Chautauqua Ave, Norman, OK, 73072, USA. -
Constraints on the Timescale of Animal Evolutionary History
Palaeontologia Electronica palaeo-electronica.org Constraints on the timescale of animal evolutionary history Michael J. Benton, Philip C.J. Donoghue, Robert J. Asher, Matt Friedman, Thomas J. Near, and Jakob Vinther ABSTRACT Dating the tree of life is a core endeavor in evolutionary biology. Rates of evolution are fundamental to nearly every evolutionary model and process. Rates need dates. There is much debate on the most appropriate and reasonable ways in which to date the tree of life, and recent work has highlighted some confusions and complexities that can be avoided. Whether phylogenetic trees are dated after they have been estab- lished, or as part of the process of tree finding, practitioners need to know which cali- brations to use. We emphasize the importance of identifying crown (not stem) fossils, levels of confidence in their attribution to the crown, current chronostratigraphic preci- sion, the primacy of the host geological formation and asymmetric confidence intervals. Here we present calibrations for 88 key nodes across the phylogeny of animals, rang- ing from the root of Metazoa to the last common ancestor of Homo sapiens. Close attention to detail is constantly required: for example, the classic bird-mammal date (base of crown Amniota) has often been given as 310-315 Ma; the 2014 international time scale indicates a minimum age of 318 Ma. Michael J. Benton. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Philip C.J. Donoghue. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Robert J. -
Fossil Calibration Schemes the Soft Explosive Model Of
Supplemental File 2: Fossil calibration schemes The soft explosive model of placental mammal evolution Matthew J. Phillips*,1 and Carmelo Fruciano1 1School of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Australia *Corresponding author: E-mail: [email protected] Contents Fossil Calibration schemes ......................................................................................................... 1 Table S2 .................................................................................................................................. 1 New calibrations ..................................................................................................................... 3 Figure S2 ................................................................................................................................ 7 References ............................................................................................................................ 10 Calibration schemes Table S2. Soft-bound calibrations employed for the MCMCtree analyses of the 122-taxon, 128- taxon, and 57-taxon empirical datasets. Calibrations among placental mammals are largely based on dos Reis et al. [1], hence the designations dR32 and dR40 (numbers indicating the number of calibrations). Several new calibrations, including some inspired by Springer et al. [2], are described below the table. Also note that the 122-taxon dR40, 128-taxon and 57-taxon analyses employ bounds as listed below, whereas the dR32 analyses, -
Mammals from the Mesozoic of Mongolia
Mammals from the Mesozoic of Mongolia Introduction and Simpson (1926) dcscrihed these as placental (eutherian) insectivores. 'l'he deltathcroids originally Mongolia produces one of the world's most extraordi- included with the insectivores, more recently have narily preserved assemblages of hlesozoic ma~nmals. t)een assigned to the Metatheria (Kielan-Jaworowska Unlike fossils at most Mesozoic sites, Inany of these and Nesov, 1990). For ahout 40 years these were the remains are skulls, and in some cases these are asso- only Mesozoic ~nanimalsknown from Mongolia. ciated with postcranial skeletons. Ry contrast, 'I'he next discoveries in Mongolia were made by the Mesozoic mammals at well-known sites in North Polish-Mongolian Palaeontological Expeditions America and other continents have produced less (1963-1971) initially led by Naydin Dovchin, then by complete material, usually incomplete jaws with den- Rinchen Barsbold on the Mongolian side, and Zofia titions, or isolated teeth. In addition to the rich Kielan-Jaworowska on the Polish side, Kazi~nierz samples of skulls and skeletons representing Late Koualski led the expedition in 1964. Late Cretaceous Cretaceous mam~nals,certain localities in Mongolia ma~nmalswere collected in three Gohi Desert regions: are also known for less well preserved, but important, Bayan Zag (Djadokhta Formation), Nenlegt and remains of Early Cretaceous mammals. The mammals Khulsan in the Nemegt Valley (Baruungoyot from hoth Early and Late Cretaceous intervals have Formation), and llcrmiin 'ISav, south-\vest of the increased our understanding of diversification and Neniegt Valley, in the Red beds of Hermiin 'rsav, morphologic variation in archaic mammals. which have heen regarded as a stratigraphic ecluivalent Potentially this new information has hearing on the of the Baruungoyot Formation (Gradzinslti r't crl., phylogenetic relationships among major branches of 1977). -
A Aardvark, 96 Abderites, 15, 162 Abderitidae, 11, 159, 200 Aboriginal, 15, 17 Adamantina, 79, 83 Africa, 79, 96, 116, 127, 130
Index A Antarctic Circumpolar Current (ACC), 126, Aardvark, 96 188, 210 Abderites, 15, 162 Antarctic Counter Current, 104 Abderitidae, 11, 159, 200 Antarctic Peninsula, 12, 80, 83, 97, 109, Aboriginal, 15, 17 113–116, 165, 187, 216 Adamantina, 79, 83 Antarctic Region, 113, 133 Africa, 79, 96, 116, 127, 130, 141 Antarctodonas, 110 Afrotemperate Region, 133 Antechinus, 56 Afrothere, 96 Aonken Sea, 139 Afrotheria, 96, 97 Aptian, 79, 98, 129 Alamitan, 83, 90, 95, 141, 211 Aquatic, 130 Alchornea, 113 Araceae, 113 Alcidedorbignia, 94 Araucaria, 130 Alisphenoid, 10, 11 Arboreal, 6, 12, 38, 58–61, 64, 65 Allen, 80 Archaeodolops, 195 Allenian, 211 Archaeohyracidae, 143 Allotherian, 212 Archaeonothos, 109 Allqokirus, 95, 214 Arctodictis, 166 Alphadelphian, 214 Arecaceae, 113 Altiplano, 127 Argentina, 13, 17, 19, 22, 61, 80, 83, 95, 107, Altricial, 203 112, 116, 130, 135, 136, 138, 157 Ameghinichnus, 140 Argentodites, 212 Ameridelphia, 157, 165, 166, 186, 192, 195 Argyrolagidae, 13, 158, 196, 220 Ameridelphian, 91, 95, 106, 107, 110, 157, Argyrolagoidea, 13, 143, 195, 201, 220 166, 200, 213, 215, 216 Argyrolagus, 158, 220 Amphidolops, 195, 200 Arid diagonal, 135, 136, 138 Anachlysictis, 23, 161 Arminiheringia, 166, 194 Andean Range, 133 A1 scenario, 138 Andean Region, 127, 132, 133, 135, 136 Ascending ramus, 170 Andes, 12, 127 Asia, 6, 127, 156, 202 Andinodelphys, 95, 157, 159 Astragalar, 10 Angiosperm, 114, 115, 129, 190 Astrapotheria, 3 Angular process, 10, 11, 171, 175 Atacama Desert, 130, 133, 136 Animalivore, 47 Atlantic Forest, 61, 130 Animalivorous, 47 Atlantic Ocean, 137 Ankle bone, 96, 107 Atlantogenata, 97 Antarctica, 8, 12, 79, 98–100, 104, 109, 112, Australasia, 218 115, 116, 126, 127, 133, 135, 137, 210, 220 © Springer Science+Business Media Dordrecht 2016 227 F.J. -
Numbat (Myrmecobius Fasciatus) Recovery Plan
Numbat (Myrmecobius fasciatus) Recovery Plan Wildlife Management Program No. 60 Western Australia Department of Parks and Wildlife February 2017 Wildlife Management Program No. 60 Numbat (Myrmecobius fasciatus) Recovery Plan February 2017 Western Australia Department of Parks and Wildlife Locked Bag 104, Bentley Delivery Centre, Western Australia 6983 Foreword Recovery plans are developed within the framework laid down in Department of Parks and Wildlife Corporate Policy Statement No. 35; Conserving Threatened and Ecological Communities (DPaW 2015a), Corporate Guidelines No. 35; Listing and Recovering Threatened Species and Ecological Communities (DPaW 2015b), and the Australian Government Department of the Environment’s Recovery Planning Compliance Checklist for Legislative and Process Requirements (Department of the Environment 2014). Recovery plans outline the recovery actions that are needed to urgently address those threatening processes most affecting the ongoing survival of threatened taxa or ecological communities, and begin the recovery process. Recovery plans are a partnership between the Department of the Environment and Energy and the Department of Parks and Wildlife. The Department of Parks and Wildlife acknowledges the role of the Environment Protection and Biodiversity Conservation Act 1999 and the Department of the Environment and Energy in guiding the implementation of this recovery plan. The attainment of objectives and the provision of funds necessary to implement actions are subject to budgetary and other constraints affecting the parties involved, as well as the need to address other priorities. This recovery plan was approved by the Department of Parks and Wildlife, Western Australia. Approved recovery plans are subject to modification as dictated by new findings, changes in status of the taxon or ecological community, and the completion of recovery actions. -
2005-01 R&C Newsletter
Research & Collections News The Occasional Newsletter of the Research and Collections Staff Natural History Museum of Los Angeles County re•search (rī-sûrch′, rē′sûrch) n. 1. Scholarly or scientific investigation or inquiry. See synonyms at inquiry. 2. Close, careful study. 3. When performed on collections, the raison d’être of all great natural history museums. January, 2005 (covering the months of November and December, 2004) Collection News Mineral Sciences Several very fine mineral and gem specimens were donated to the Museum at the end of 2004 by two long-time supporters, greatly enriching the Gem and Mineral Collection. Mel Hindin donated three sapphire crystals from Sri Lanka, a rubellite tourmaline crystal from Brazil and a bi-color tourmaline crystal and a pink tourmaline gem from California. Most notable are the two tourmaline crystals. The 15-cm-tall rubellite is from one of the world’s most famous tourmaline discoveries, which occurred in 1978 at the Jonas mine in Minas Gerais, Brazil. The 19-cm-tall green/pink bi- color crystal is from one of California’s most famous tourmaline discoveries, which occurred in 2001 and 2002 at the Cryo-Genie mine near Warner Springs in San Diego County. All of the specimens donated by Mel Hindin are already on display in the Hall of Gems and Minerals. At left: Rubellite Tourmaline – Jonas mine, Minas Gerais, Brazil At right: Bi-color Tourmaline – Cryo-Genie mine, San Diego County, California Beverly Savinar donated three exceptional mineral specimens from the collection she and her late husband Hyman built. Perhaps, the most striking is 16-cm-tall crystallized gold on quartz from the Eagle’s Nest mine in Placer County, California.