Wild Rice Taxonomy
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Oryza Longistaminata) ECOTYPES and CULTIVATED RICE (Otyza Sativa) CULTIVARS from the COASTAL REGION of KENYA '!
\ X INTERACTIVE EFFECT ON MORPHOLOGY, PHENOLOGY AND GROWTH OF THE WILD RICE (Oryza longistaminata) ECOTYPES AND CULTIVATED RICE (Otyza sativa) CULTIVARS FROM THE COASTAL REGION OF KENYA '! BY NJERU S. MWINGI (B.Sc. Hons, Egerton ) A THESIS SUBMITTED TO UNIVERSITY OF NAIROBI, SCHOOL OF BIOLOGICAL SCIENCES, IN PARTIAL FULFILLMENT OF A MASTERS OF SCIENCE DEGREE IN BOTANY University ot NAIROBI Library DECLARATION 1, Serah Mwingi Njeru, hereby declare that this thesis is my original work and has not been presented for a Master of Science degree in any other university Signature _____ ___________ Date__ ______1;f) <rl We the undersigned declare that this thesis has been submitted with our approval as the university supervisors Prof. J. I. Kinyamario Signature Date Ig'/g'/CLO// Dr J. K. Mworia Signature Date f g / g / i 0 / / d e d ic a t io n This thesis is dedicated to my mother, Retisia Kivutu, for her great dedication towards all my academic achievements. Her efforts are always appreciated and will remain a challenge to me forever. Mama you have done a great job. acknowledgements I wish to express my sincere appreciation and gratitude to my supervisor Prof. J. I. Kinyamario for his contribution, support, guidance and motivation as I did this work. Also, I wish to thank him for introducing me to the Biosafe-Train Project and the larger DAN1DA ENRECA research group. Without him it would have been very difficult to accomplish my objectives. I am also very grateful to my other suprvisor, Dr. J. K. Mworia for his support and guidance throughout my M.Sc. -
Identification of Anther Length QTL and Construction of Chromosome
plants Article Identification of Anther Length QTL and Construction of Chromosome Segment Substitution Lines of Oryza longistaminata Takayuki Ogami, Hideshi Yasui, Atsushi Yoshimura and Yoshiyuki Yamagata * Plant Breeding Laboratory, Faculty of Agriculture, Kyushu University. 744, Motooka, Nishi-ku, Fukuoka 819-0395, Japan; [email protected] (T.O.); [email protected] (H.Y.); [email protected] (A.Y.) * Correspondence: [email protected]; Tel.: +81-92-802-4553 Received: 30 August 2019; Accepted: 29 September 2019; Published: 29 September 2019 Abstract: Life histories and breeding systems strongly affect the genetic diversity of seed plants, but the genetic architectures that promote outcrossing in Oryza longistaminata, a perennial wild species in Africa, are not understood. We conducted a genetic analysis of the anther length of O. longistaminata accession W1508 using advanced backcross quantitative trait locus (QTL) analysis and chromosomal segment substitution lines (CSSLs) in the genetic background of O. sativa Taichung 65 (T65), with simple sequence repeat markers. QTL analysis of the BC3F1 population (n = 100) revealed that four main QTL regions on chromosomes 3, 5, and 6 were associated to anther length. We selected a minimum set of BC3F2 plants for the development of CSSLs to cover as much of the W1508 genome as possible. The additional minor QTLs were suggested in the regional QTL analysis, using 21 to 24 plants in each of the selected BC3F2 population. The main QTLs found on chromosomes 3, 5, and 6 were validated and designated qATL3, qATL5, qATL6.1, and qATL6.2, as novel QTLs identified in O. -
CATALOGUE of the GRASSES of CUBA by A. S. Hitchcock
CATALOGUE OF THE GRASSES OF CUBA By A. S. Hitchcock. INTRODUCTION. The following list of Cuban grasses is based primarily upon the collections at the Estaci6n Central Agron6mica de Cuba, situated at Santiago de las Vegas, a suburb of Habana. The herbarium includes the collections made by the members of the staff, particularly Mr. C. F. Baker, formerly head of the department of botany, and also the Sauvalle Herbarium deposited by the Habana Academy of Sciences, These specimens were examined by the writer during a short stay upon the island in the spring of 1906, and were later kindly loaned by the station authorities for a more critical study at Washington. The Sauvalle Herbarium contains a fairly complete set of the grasses col- lected by Charles Wright, the most important collection thus far obtained from Cuba. In addition to the collections at the Cuba Experiment Station, the National Herbarium furnished important material for study, including collections made by A. H. Curtiss, W. Palmer and J. H. Riley, A. Taylor (from the Isle of Pines), S. M. Tracy, Brother Leon (De la Salle College, Habana), and the writer. The earlier collections of Wright were sent to Grisebach for study. These were reported upon by Grisebach in his work entitled "Cata- logus Plant arum Cubensium," published in 1866, though preliminary reports appeared earlier in the two parts of Plantae Wrightianae. * During the spring of 1907 I had the opportunity of examining the grasses in the herbarium of Grisebach in Gottingen.6 In the present article I have, with few exceptions, accounted for the grasses listed by Grisebach in his catalogue of Cuban plants, and have appended a list of these with references to the pages in the body of this article upon which the species are considered. -
Establishment of a Global Network for the in Situ Conservation of Crop Wild Relatives: Status and Needs
THEMATIC BACKGROUND STUDY Establishment of a Global Network for the In Situ Conservation of Crop Wild Relatives: Status and Needs Nigel Maxted and Shelagh Kell BACKGROUND STUDY PAPER NO. 39 October 2009 COMMISSION ON GENETIC RESOURCES FOR FOOD AND AGRICULTURE ESTABLISHMENT OF A GLOBAL NETWORK FOR THE IN SITU CONSERVATION OF CROP WILD RELATIVES: STATUS AND NEEDS by *By Nigel Maxted and Shelagh Kell The content of this document is entirely the responsibility of the authors, and does not .necessarily represent the views of the FAO, or its Members 2 * School of Biosciences, University of Birmingham. Disclaimer The content of this document is entirely the responsibility of the authors, and does not necessarily represent the views of the Food and Agriculture Organization of the United Nations (FAO), or its Members. The designations employed and the presentation of material do not imply the expression of any opinion whatsoever on the part of FAO concerning legal or development status of any country, territory, city or area or of its authorities or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed by FAO in preference to others of a similar nature that are not mentioned. CONTENTS SUMMARY 6 ACKNOWLEDGEMENTS 7 PART 1: INTRODUCTION 8 1.1 Background and scope 8 1.2 The global and local importance of crop wild relatives 10 1.3 Definition of a crop wild relative 12 1.4 Global numbers of crop -
Geographic Origins, Genetic Diversity and the Molecular Clock Hypothesis in the Oryzeae
Geographic Origins, Genetic Diversity and the Molecular Clock Hypothesis in the Oryzeae G. SECQMD Biologie des Populations et des Peuplements, Centre Louis Emberger, C.N.R. S,, B.P. 5051 ., F-34033 Montpellier Cedex (France). And Institut Français de Recherche Scientifique pour le Développement en Coopération (ORSTOM), 24 rue Bayard. 75008 Paris. ABSTRACT The two species groups,Sativa and Latifolia of the genus Oryza seem to be genetically independant in their variation. They have both a pan-tropical distribution. A study using isozyme electrophoresis of strains representing most of the area of distribution at 16 to 40 loci, shows a genetic structure in disagreement with that previously established on a morphological basis (Morishima 1969 and others). The isozyme structure shows, fn both groups, a maximum divergence between Australian and other taxa, while American taxa are closely related to theis Asian counterparts. The application of the calibration of the electrophoretic clock by Sapich (1977) to the distances found points to a tlme of divergence for the Australian taxa compatible with geological data of a collision between Australasia and South-East Asia some 15 millions $years ago. The same calibration gives estimates compatible with OUT knowledge on the palaeoenvironment in particular with regards to : 1)- The possibilities of migration between Eurasia and Africa (interrupted earlier for species of rice adapted to forest or inundated plain than for those species adapted to temporary pools in arid savannas) 2)- The emergence of the Himalayan barrier between China and South Asia. The evolutionary picture which emerges ia that of an Eurasian Y Fonds i-i-ieíTL3i RSTO 1 DoGu 6 M c NATO AS1Series, Vol. -
Morphological and Molecular Dissection of Wild Rices from Eastern India Suggests Distinct Speciation Received: 8 May 2017 Accepted: 22 January 2018 Between O
www.nature.com/scientificreports OPEN Morphological and molecular dissection of wild rices from eastern India suggests distinct speciation Received: 8 May 2017 Accepted: 22 January 2018 between O. rufpogon and O. nivara Published: xx xx xxxx populations Rashmita Samal, Pritesh Sundar Roy, Auromira Sahoo, Meera Kumari Kar, Bhaskar Chandra Patra, Bishnu Charan Marndi & Jwala Narasimha Rao Gundimeda The inter relationships between the two progenitors is interesting as both wild relatives are known to be the great untapped gene reservoirs. The debate continues on granting a separate species status to Oryza nivara. The present study was conducted on populations of Oryza rufpogon and Oryza nivara from Eastern India employing morphological and molecular characteristics. The cluster analysis of the data on morphological traits could clearly classify the two wild forms into two separate discrete groups without any overlaps i.e. lack of intermediate forms, suggesting the non-sympatric existence of the wild forms. Amplifcation of hyper variable regions of the genome could reveal 144 alleles suggesting high genetic diversity values (average He = 0.566). Moreover, with 42.37% of uncommon alleles between the two wild relatives, the molecular variance analysis (AMOVA) could detect only 21% of total variation (p < 0.001) among them and rest 59% was within them. The population structure analysis clearly classifed these two wild populations into two distinct sub-populations (K = 2) without any overlaps i.e. lack of intermediate forms, suggesting the non-sympatric existence of the wild forms. Clear diferentiation into two distinct groups indicates that O. rufpogon and O. nivara could be treated as two diferent species. -
Applications of an Ecophysiological Model for Irrigated Rice (Oryza Sativa)- Echinochloa Competition
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Agronomy & Horticulture -- Faculty Publications Agronomy and Horticulture Department 1996 Applications of an Ecophysiological Model for Irrigated Rice (Oryza sativa)- Echinochloa Competition John L. Lindquist University of Nebraska-Lincoln, [email protected] Martin Kropff University of Minnesota Follow this and additional works at: https://digitalcommons.unl.edu/agronomyfacpub Part of the Plant Sciences Commons Lindquist, John L. and Kropff, Martin, "Applications of an Ecophysiological Model for Irrigated Rice (Oryza sativa)- Echinochloa Competition" (1996). Agronomy & Horticulture -- Faculty Publications. 617. https://digitalcommons.unl.edu/agronomyfacpub/617 This Article is brought to you for free and open access by the Agronomy and Horticulture Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Agronomy & Horticulture -- Faculty Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Weed Science Society of America Applications of an Ecophysiological Model for Irrigated Rice (Oryza sativa)-Echinochloa Competition Author(s): John L. Lindquist and Martin J. Kropff Reviewed work(s): Source: Weed Science, Vol. 44, No. 1 (Jan. - Mar., 1996), pp. 52-56 Published by: Weed Science Society of America and Allen Press Stable URL: http://www.jstor.org/stable/4045782 . Accessed: 14/09/2012 10:47 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. -
Databases and Bioinformatics Tools for Rice Research
Current Plant Biology 7–8 (2016) 39–52 Contents lists available at ScienceDirect Current Plant Biology jo urnal homepage: www.elsevier.com/locate/cpb ଝ Databases and bioinformatics tools for rice research ∗ Priyanka Garg, Pankaj Jaiswal Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR 97331, USA a r t i c l e i n f o a b s t r a c t Keywords: Rice is one of the most important agricultural crop in the world and widely studied model plant. The Biological database completion of whole genome sequence of rice (Oryza sativa) and high-throughput experimental plat- Rice forms have led to the generation of the tremendous amount of data, and development of the specialized Gene expression databases and bioinformatics tools for data processing, efficient organization, analysis, and visualiza- Biocuration tion. In this article, we discuss a collection of biological databases that host genomics data on sequence, Ontology Pathways gene expression, genetic variation, gene-interactomes, and pathways, and facilitate data analysis and visualization. © 2016 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). 1. Introduction organisms including rice. In contrast community-specific databases cater to the need of a specific research community such as plant Over the last decades, an increasing amount of genome-scale databases, e.g. PlantGDB [8], ENSEMBL Plants [9], Gramene [10], experimental data sets became available and several online and PLEXdb [11], Gene Expression Atlas [12], Planteome [13], etc. The open source, biology databases have emerged. -
Micromorphology and Anatomy of the Leaf Blade: a Contribution to the Taxonomy of Luziola (Poaceae, Oryzoideae) from the Pantanal, Brazil
Plant Syst Evol (2016) 302:265–273 DOI 10.1007/s00606-015-1260-8 ORIGINAL ARTICLE Micromorphology and anatomy of the leaf blade: a contribution to the taxonomy of Luziola (Poaceae, Oryzoideae) from the Pantanal, Brazil 1 2 2 Thales D. Leandro • Edna Scremin-Dias • Rosani do Carmo de Oliveira Arruda Received: 5 January 2015 / Accepted: 19 October 2015 / Published online: 12 November 2015 Ó Springer-Verlag Wien 2015 Abstract Luziola comprises nine monoecious, aquatic A key for the identification of the studied species is pre- species and has its center of diversity in South America. sented based on the leaf blade features. Due to the morphological similarities among Luziola spe- cies in the vegetative stage, the micromorphology and Keywords Aquatic grasses Á Leaf anatomy Á Luziolinae Á anatomy of the leaf blade of five Luziola species were Oryzeae Á Poales Á Zizaniinae studied to survey potentially useful features for taxon identification. Oryzoid silica bodies; silicified unicellular trichomes with a rounded apex; stomata in furrows on the Introduction adaxial surface; a complex midrib consisting of at least two vascular bundles; superposed vascular bundles in the The subfamily Oryzoideae (syn. Ehrhartoideae) is mono- mesophyll; and fusoid cells are features shared by some of phyletic and a member of the BOP clade [Bambu- these species. Conversely, features unique to a single soideae ? Oryzoideae ? Pooideae] of grasses (Grass species include: vertically elongated epidermal cells sur- Phylogeny Working Group (GPWG) II 2012; Soreng et al. rounding pointed unicellular trichomes, flat midrib and leaf 2015). Oryzoideae (excluding Streptogyneae) share a margin dimorphism (L. fragilis), and an obtuse leaf blade combination of characters including spikelets with two margin (L. -
Poaceae: Pooideae) Based on Plastid and Nuclear DNA Sequences
d i v e r s i t y , p h y l o g e n y , a n d e v o l u t i o n i n t h e monocotyledons e d i t e d b y s e b e r g , p e t e r s e n , b a r f o d & d a v i s a a r h u s u n i v e r s i t y p r e s s , d e n m a r k , 2 0 1 0 Phylogenetics of Stipeae (Poaceae: Pooideae) Based on Plastid and Nuclear DNA Sequences Konstantin Romaschenko,1 Paul M. Peterson,2 Robert J. Soreng,2 Núria Garcia-Jacas,3 and Alfonso Susanna3 1M. G. Kholodny Institute of Botany, Tereshchenkovska 2, 01601 Kiev, Ukraine 2Smithsonian Institution, Department of Botany MRC-166, National Museum of Natural History, P.O. Box 37012, Washington, District of Columbia 20013-7012 USA. 3Laboratory of Molecular Systematics, Botanic Institute of Barcelona (CSIC-ICUB), Pg. del Migdia, s.n., E08038 Barcelona, Spain Author for correspondence ([email protected]) Abstract—The Stipeae tribe is a group of 400−600 grass species of worldwide distribution that are currently placed in 21 genera. The ‘needlegrasses’ are char- acterized by having single-flowered spikelets and stout, terminally-awned lem- mas. We conducted a molecular phylogenetic study of the Stipeae (including all genera except Anemanthele) using a total of 94 species (nine species were used as outgroups) based on five plastid DNA regions (trnK-5’matK, matK, trnHGUG-psbA, trnL5’-trnF, and ndhF) and a single nuclear DNA region (ITS). -
Oryza Longistaminata) Tissues Identifies Rhizome Specific Genes and Proteins That Are Targets for Cultivated Rice Improvement
A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement Item Type Article Authors He, Ruifeng; Salvato, Fernanda; Park, Jeong-Jin; Kim, Min-Jeong; Nelson, William; Balbuena, Tiago; Willer, Mark; Crow, John; May, Greg; Soderlund, Carol; Thelen, Jay; Gang, David Citation He et al. BMC Plant Biology 2014, 14:46 http:// www.biomedcentral.com/1471-2229/14/46 DOI 10.1186/1471-2229-14-46 Publisher BioMed Central Journal BMC Plant Biology Rights © 2014 He et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/ licenses/by/2.0). Download date 23/09/2021 20:21:48 Item License https://creativecommons.org/licenses/by/2.0/ Version Final published version Link to Item http://hdl.handle.net/10150/610086 A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement He et al. He et al. BMC Plant Biology 2014, 14:46 http://www.biomedcentral.com/1471-2229/14/46 He et al. BMC Plant Biology 2014, 14:46 http://www.biomedcentral.com/1471-2229/14/46 RESEARCH ARTICLE Open Access A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement Ruifeng He1, Fernanda Salvato2,5, Jeong-Jin Park1, Min-Jeong Kim1, William Nelson3, Tiago S Balbuena2,5, Mark Willer3, John A Crow4, Greg D May4, Carol A Soderlund3, Jay J Thelen2 and David R Gang1* Abstract Background: The rhizome, the original stem of land plants, enables species to invade new territory and is a critical component of perenniality, especially in grasses. -
Ethnobotany of the Miskitu of Eastern Nicaragua
Journal of Ethnobiology 17(2):171-214 Winter 1997 ETHNOBOTANY OF THE MISKITU OF EASTERN NICARAGUA FELIXG.COE Department of Biology Tennessee Technological University P.O. Box5063, Cookeville, TN 38505 GREGORY J. ANDERSON Department of Ecology and Evolutionary Biology University of Connecticut, Box U-43, Storrs, CT 06269-3043 ABSTRACT.-The Miskitu are one of the three indigenous groups of eastern Nicaragua. Their uses of 353 species of plants in 262 genera and 89 families were documented in two years of fieldwork. Included are 310 species of medicinals, 95 species of food plants, and 127 species used for construction and crafts, dyes and tannins, firewood, and forage. Only 14 of 50 domesticated food species are native to the New World tropics, and only three to Mesoamerica. A majority of plant species used for purposes other than food or medicine are wild species native to eastern Nicaragua. Miskitu medicinal plants are used to treat more than 50 human ailments. Most (80%) of the medicinal plants are native to eastern Nicaragua, and two thirds have some bioactive principle. Many medicinal plants are herbs (40%) or trees (30%), and leaves are the most frequently used plant part. Herbal remedies are most often prepared as decoctions that are administered orally. The Miskitu people are undergoing rapid acculturation caused by immigration of outsiders. This study is important not only for documenting uses of plants for science in general, but also because it provides a written record in particular of the oral tradition of medicinal uses of plants of and for the Miskitu. RESUMEN.-Los Miskitus son uno de los tres grupos indigenas del oriente de Nicaragua.