PROTEIN SULFENIC ACIDS in REDOX SIGNALING Leslie B
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Activation of Microsomal Glutathione S-Transferase. in Tent-Butyl Hydroperoxide-Induced Oxidative Stress of Isolated Rat Liver
Activation of Microsomal Glutathione S-Transferase. in tent-Butyl Hydroperoxide-Induced Oxidative Stress of Isolated Rat Liver Yoko Aniya'° 2 and Ai Daido' 'Laboratory of Physiology and Pharmacology , School of Health Sciences, 2Research Center of Comprehensive Medicine, Faculty of Medicine, University of the Ryukyus, 207 Uehara, Nishihara, Okinawa 903-01, Japan Received May 10, 1994 Accepted June 17, 1994 ABSTRACT-The activation of microsomal glutathione S-transferase in oxidative stress was investigated by perfusing isolated rat liver with 1 mM tert-butyl hydroperoxide (t-BuOOH). When the isolated liver was per fused with t-BuOOH for 7 min and 10 min, microsomal, but not cytosolic, glutathione S-transferase activ ity was increased 1.3-fold and 1.7-fold, respectively, with a concomitant decrease in glutathione content. A dimer protein of microsomal glutathione S-transferase was also detected in the t-BuOOH-perfused liver. The increased microsomal glutathione S-transferase activity after perfusion with t-BuOOH was reversed by dithiothreitol, and the dimer protein of the transferase was also abolished. When the rats were pretreated with the antioxidant a-tocopherol or the iron chelator deferoxamine, the increases in microsomal glutathione S-transferase activity and lipid peroxidation caused by t-BuOOH perfusion of the isolated liver was prevented. Furthermore, the activation of microsomal GSH S-transferase by t-BuOOH in vitro was also inhibited by incubation of microsomes with a-tocopherol or deferoxamine. Thus it was confirmed that liver microsomal glutathione S-transferase is activated in the oxidative stress caused by t-BuOOH via thiol oxidation of the enzyme. Keywords: Enzyme activation, Glutathione S-transferase, Liver perfusion, Oxidative stress, tert-Butyl hydroperoxide Glutathione (GSH) S-transferases (EC 2. -
The Peroxiredoxin Tpx1 Is Essential As a H2O2 Scavenger During Aerobic Growth in Fission Yeast Mo´Nica Jara,* Ana P
Molecular Biology of the Cell Vol. 18, 2288–2295, June 2007 The Peroxiredoxin Tpx1 Is Essential as a H2O2 Scavenger during Aerobic Growth in Fission Yeast Mo´nica Jara,* Ana P. Vivancos,* Isabel A. Calvo, Alberto Moldo´n, Miriam Sanso´, and Elena Hidalgo Departament de Cie`ncies Experimentals i de la Salut, Universitat Pompeu Fabra, E-08003 Barcelona, Spain Submitted November 27, 2006; Revised March 16, 2007; Accepted March 26, 2007 Monitoring Editor: Thomas Fox Peroxiredoxins are known to interact with hydrogen peroxide (H2O2) and to participate in oxidant scavenging, redox signal transduction, and heat-shock responses. The two-cysteine peroxiredoxin Tpx1 of Schizosaccharomyces pombe has been characterized as the H2O2 sensor that transduces the redox signal to the transcription factor Pap1. Here, we show that Tpx1 is essential for aerobic, but not anaerobic, growth. We demonstrate that Tpx1 has an exquisite sensitivity for its substrate, which explains its participation in maintaining low steady-state levels of H2O2. We also show in vitro and in vivo that inactivation of Tpx1 by oxidation of its catalytic cysteine to a sulfinic acid is always preceded by a sulfinic acid form in a covalently linked dimer, which may be important for understanding the kinetics of Tpx1 inactivation. Furthermore, we provide evidence that a strain expressing Tpx1.C169S, lacking the resolving cysteine, can sustain aerobic growth, and we show that small reductants can modulate the activity of the mutant protein in vitro, probably by supplying a thiol group to substitute for cysteine 169. INTRODUCTION available to form a disulfide bond; the source of the reducing equivalents for regenerating this thiol is not known, al- Peroxiredoxins (Prxs) are a family of antioxidant enzymes though glutathione (GSH) has been proposed to serve as the that reduce hydrogen peroxide (H2O2) and/or alkyl hy- electron donor in this reaction (Kang et al., 1998b). -
Microbial Peroxidases and Their Applications
International Journal of Scientific & Engineering Research Volume 12, Issue 2, February-2021 ISSN 2229-5518 474 Microbial Peroxidases and their applications Divya Ghosh, Saba Khan, Dr. Sharadamma N. Divya Ghosh is currently pursuing master’s program in Life Science in Mount Carmel College, Bangalore, India, Ph: 9774473747; E- mail: [email protected]; Saba Khan is currently pursuing master’s program in Life Science in Mount Carmel College, Bangalore, India, Ph: 9727450944; E-mail: [email protected]; Dr. Sharadamma N is an Assistant Professor in Department of Life Science, Mount Carmel College, Autonomous, Bangalore, Karnataka- 560052. E-mail: [email protected] Abstract: Peroxidases are oxidoreductases that can convert many compounds into their oxidized form by a free radical mechanism. This peroxidase enzyme is produced by microorganisms like bacteria and fungi. Peroxidase family includes many members in it, one such member is lignin peroxidase. Lignin peroxidase has the potential to degrade the lignin by oxidizing phenolic structures in it. The microbes that have shown efficient production of peroxidase are Bacillus sp., Providencia sp., Streptomyces, Pseudomonas sp. These microorganisms were optimized to produce peroxidase efficiently. These microbial strains were identified by 16S rDNA and rpoD gene sequences and Sanger DNA sequencing techniques. There are certain substrates on which Peroxidase acts are guaiacol, hydrogen peroxide, etc. The purification of peroxidase was done by salt precipitation, ion-exchange chromatography, dialysis, anion exchange, and molecular sieve chromatography method. The activity of the enzyme was evaluated with different parameters like enzyme activity, protein concentration, specific activity, total activity, the effect of heavy metals, etc. -
Structural and Functional Studies of Rubrerythrin From
STRUCTURAL AND FUNCTIONAL STUDIES OF RUBRERYTHRIN FROM DESULFOVIBRIO VULGARIS by SHI JIN (Under the direction of Dr. Donald M. Kurtz, Jr.) ABSTRACT Rubrerythrin (Rbr), found in anaerobic or microaerophilic bacteria and archaea, is a non-heme iron protein containing an oxo-bridged diiron site and a rubredoxin-like [Fe(SCys)4] site. Rbr has NADH peroxidase activity and it has been proposed as one of the key enzyme pair (Superoxide Reductase/Peroxidase) in the oxidative stress protection system of anaerobic microorganisms. In order to probe the mechanism of the electron pathway in Rbr peroxidase reaction, X-ray crystallography and rapid reaction techniques were used. Recently, the high-resolution crystal structures of reduced Rbr and its azide adduct were determined. Detailed information of the oxidation state changes of the irons at the metal-binding sites during the oxidation of Rbr by hydrogen peroxide was obtained using stopped-flow spectrophotometry and freeze quench EPR. The structures and activities of Rbrs with Zn(II) ions substituted for iron(III) ions at different metal-binding sites, which implicate the influence of positive divalent metal ions to the Rbr, are also investigated. The molecular mechanism for Rbr peroxidase reaction during the turnover based on results from X-ray crystallography and kinetic studies is proposed. INDEX WORDS: Rubrerythrin, Desulfovibrio vulgaris, NADH peroxidase, Alternative oxidative stress defense system, Crystal structures, Oxidized form, Reduced form, Azide adduct, Hydrogen peroxide, Internal electron transfer, Zinc ion derivatives STRUCTURAL AND FUNCTIONAL STUDIES OF RUBRERYTHRIN FROM DESULFOVIBRIO VULGARIS by SHI JIN B.S., Peking University, P. R. China, 1998 A Dissertation Submitted to the Graduate Faculty of The University Georgia in Partial Fulfillment of the Requirements for the Degree DOCTOR OF PHILOSOPHY ATHENS, GEORGIA 2002 © 2002 Shi Jin All Rights Reserved STRUCTURAL AND FUNCTIONAL STUDIES OF RUBRERYTHRIN FROM DESULFOVIBRIO VULGARIS by SHI JIN Approved: Major Professor: Donald M. -
New Automatically Built Profiles for a Better Understanding of the Peroxidase Superfamily Evolution
University of Geneva Practical training report submitted for the Master Degree in Proteomics and Bioinformatics New automatically built profiles for a better understanding of the peroxidase superfamily evolution presented by Dominique Koua Supervisors: Dr Christophe DUNAND Dr Nicolas HULO Laboratory of Plant Physiology, Dr Christian J.A. SIGRIST University of Geneva Swiss Institute of Bioinformatics PROSITE group. Geneva, April, 18th 2008 Abstract Motivation: Peroxidases (EC 1.11.1.x), which are encoded by small or large multigenic families, are involved in several important physiological and developmental processes. These proteins are extremely widespread and present in almost all living organisms. An important number of haem and non-haem peroxidase sequences are annotated and classified in the peroxidase database PeroxiBase (http://peroxibase.isb-sib.ch). PeroxiBase contains about 5800 peroxidase sequences classified as haem peroxidases and non-haem peroxidases and distributed between thirteen superfamilies and fifty subfamilies, (Passardi et al., 2007). However, only a few classification tools are available for the characterisation of peroxidase sequences: InterPro motifs, PRINTS and specifically designed PROSITE profiles. However, these PROSITE profiles are very global and do not allow the differenciation between very close subfamily sequences nor do they allow the prediction of specific cellular localisations. Due to the rapid growth in the number of available sequences, there is a need for continual updates and corrections of peroxidase protein sequences as well as for new tools that facilitate acquisition and classification of existing and new sequences. Currently, the PROSITE generalised profile building manner and their usage do not allow the differentiation of sequences from subfamilies showing a high degree of similarity. -
Why Nature Chose Selenium Hans J
Reviews pubs.acs.org/acschemicalbiology Why Nature Chose Selenium Hans J. Reich*, ‡ and Robert J. Hondal*,† † University of Vermont, Department of Biochemistry, 89 Beaumont Ave, Given Laboratory, Room B413, Burlington, Vermont 05405, United States ‡ University of WisconsinMadison, Department of Chemistry, 1101 University Avenue, Madison, Wisconsin 53706, United States ABSTRACT: The authors were asked by the Editors of ACS Chemical Biology to write an article titled “Why Nature Chose Selenium” for the occasion of the upcoming bicentennial of the discovery of selenium by the Swedish chemist Jöns Jacob Berzelius in 1817 and styled after the famous work of Frank Westheimer on the biological chemistry of phosphate [Westheimer, F. H. (1987) Why Nature Chose Phosphates, Science 235, 1173−1178]. This work gives a history of the important discoveries of the biological processes that selenium participates in, and a point-by-point comparison of the chemistry of selenium with the atom it replaces in biology, sulfur. This analysis shows that redox chemistry is the largest chemical difference between the two chalcogens. This difference is very large for both one-electron and two-electron redox reactions. Much of this difference is due to the inability of selenium to form π bonds of all types. The outer valence electrons of selenium are also more loosely held than those of sulfur. As a result, selenium is a better nucleophile and will react with reactive oxygen species faster than sulfur, but the resulting lack of π-bond character in the Se−O bond means that the Se-oxide can be much more readily reduced in comparison to S-oxides. -
Catalysis of Peroxide Reduction by Fast Reacting Protein Thiols Focus Review †,‡ †,‡ ‡,§ ‡,§ ∥ Ari Zeida, Madia Trujillo, Gerardo Ferrer-Sueta, Ana Denicola, Darío A
Review Cite This: Chem. Rev. 2019, 119, 10829−10855 pubs.acs.org/CR Catalysis of Peroxide Reduction by Fast Reacting Protein Thiols Focus Review †,‡ †,‡ ‡,§ ‡,§ ∥ Ari Zeida, Madia Trujillo, Gerardo Ferrer-Sueta, Ana Denicola, Darío A. Estrin, and Rafael Radi*,†,‡ † ‡ § Departamento de Bioquímica, Centro de Investigaciones Biomedicaś (CEINBIO), Facultad de Medicina, and Laboratorio de Fisicoquímica Biologica,́ Facultad de Ciencias, Universidad de la Republica,́ 11800 Montevideo, Uruguay ∥ Departamento de Química Inorganica,́ Analítica y Química-Física and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, 2160 Buenos Aires, Argentina ABSTRACT: Life on Earth evolved in the presence of hydrogen peroxide, and other peroxides also emerged before and with the rise of aerobic metabolism. They were considered only as toxic byproducts for many years. Nowadays, peroxides are also regarded as metabolic products that play essential physiological cellular roles. Organisms have developed efficient mechanisms to metabolize peroxides, mostly based on two kinds of redox chemistry, catalases/peroxidases that depend on the heme prosthetic group to afford peroxide reduction and thiol-based peroxidases that support their redox activities on specialized fast reacting cysteine/selenocysteine (Cys/Sec) residues. Among the last group, glutathione peroxidases (GPxs) and peroxiredoxins (Prxs) are the most widespread and abundant families, and they are the leitmotif of this review. After presenting the properties and roles of different peroxides in biology, we discuss the chemical mechanisms of peroxide reduction by low molecular weight thiols, Prxs, GPxs, and other thiol-based peroxidases. Special attention is paid to the catalytic properties of Prxs and also to the importance and comparative outlook of the properties of Sec and its role in GPxs. -
Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater
University of Windsor Scholarship at UWindsor Electronic Theses and Dissertations Theses, Dissertations, and Major Papers 3-10-2019 Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater Neda Mashhadi University of Windsor Follow this and additional works at: https://scholar.uwindsor.ca/etd Recommended Citation Mashhadi, Neda, "Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater" (2019). Electronic Theses and Dissertations. 7646. https://scholar.uwindsor.ca/etd/7646 This online database contains the full-text of PhD dissertations and Masters’ theses of University of Windsor students from 1954 forward. These documents are made available for personal study and research purposes only, in accordance with the Canadian Copyright Act and the Creative Commons license—CC BY-NC-ND (Attribution, Non-Commercial, No Derivative Works). Under this license, works must always be attributed to the copyright holder (original author), cannot be used for any commercial purposes, and may not be altered. Any other use would require the permission of the copyright holder. Students may inquire about withdrawing their dissertation and/or thesis from this database. For additional inquiries, please contact the repository administrator via email ([email protected]) or by telephone at 519-253-3000ext. 3208. Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater By Neda Mashhadi A Dissertation Submitted to the Faculty of Graduate Studies through the Department of Chemistry and Biochemistry in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy at the University of Windsor Windsor, Ontario, Canada 2019 © 2019 Neda Mashhadi Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater by Neda Mashhadi APPROVED BY: _____________________________ A. -
NADH PEROXIDASE Ph
Enzymatic Assay of NADH PEROXIDASE (EC 1.11.1.1) PRINCIPLE: NADH Peroxidase ß-NADH + H2O2 > ß-NAD + 2H2O Abbreviations used: ß-NADH = ß-Nicotinamide Adenine Dinucleotide, Reduced Form ß-NAD = ß-Nicotinamide Adenine Dinucleotide, Oxidized Form CONDITIONS: T = 25°C, pH 6.0, A365nm, Light path = 1 cm METHOD: Continuous Spectrophotometric Rate Determination REAGENTS: A. 200 mM Tris Acetate Buffer, pH 6.0 at 25°C (Prepare 100 ml in deionized water using Trizma Acetate, Sigma Prod. No. T-1258. Adjust to pH 6.0 at 25°C with 1 M HCl.) B. 0.30% (w/w) Hydrogen Peroxide Solution (H2O2) (Prepare 10 ml in deionized water using Hydrogen Peroxide 30% (w/w) Solution, Sigma Prod. No. H-1009.) C. 12 mM ß-Nicotinamide Adenine Dinucleotide, Reduced Form, Solution (NADH) (Dissolve the contents of one 10 mg vial of ß-Nicotinamide Adenine Dinucleotide, Reduced Form, Sodium Salt, Sigma Stock No. 340-110, in the appropriate volume of deionized water.) D. NADH Peroxidase Enzyme Solution (Immediately before use, prepare a solution containing 0.2 - 0.4 unit of NADH Peroxidase in cold deionized water.) SPHYDR04 Page 1 of 3 Revised: 01/17/97 Enzymatic Assay of NADH PEROXIDASE (EC 1.11.1.1) PROCEDURE: Pipette (in milliliters) the following reagents into suitable cuvettes: Test Blank Reagent A (Buffer) 3.00 3.00 Reagent C (NADH) 0.10 0.10 Reagent D (Enzyme Solution) 0.10 ------ Deionized Water ------ 0.10 Mix by inversion and equilibrate to 25°C. Monitor the baseline at A365nm for 5 minutes in order to determine any NADH oxidase activity which may be present.1 Then add: Reagent B (H2O2) 0.10 0.10 Immediately mix by inversion and monitor the decrease in A365nm for approximately 5 minutes. -
Discovery of Industrially Relevant Oxidoreductases
DISCOVERY OF INDUSTRIALLY RELEVANT OXIDOREDUCTASES Thesis Submitted for the Degree of Master of Science by Kezia Rajan, B.Sc. Supervised by Dr. Ciaran Fagan School of Biotechnology Dublin City University Ireland Dr. Andrew Dowd MBio Monaghan Ireland January 2020 Declaration I hereby certify that this material, which I now submit for assessment on the programme of study leading to the award of Master of Science, is entirely my own work, and that I have exercised reasonable care to ensure that the work is original, and does not to the best of my knowledge breach any law of copyright, and has not been taken from the work of others save and to the extent that such work has been cited and acknowledged within the text of my work. Signed: ID No.: 17212904 Kezia Rajan Date: 03rd January 2020 Acknowledgements I would like to thank the following: God, for sending me angels in the form of wonderful human beings over the last two years to help me with any- and everything related to my project. Dr. Ciaran Fagan and Dr. Andrew Dowd, for guiding me and always going out of their way to help me. Thank you for your patience, your advice, and thank you for constantly believing in me. I feel extremely privileged to have gotten an opportunity to work alongside both of you. Everything I’ve learnt and the passion for research that this project has sparked in me, I owe it all to you both. Although I know that words will never be enough to express my gratitude, I still want to say a huge thank you from the bottom of my heart. -
Explorative Application of Selenium Catalysts in the Oxidation of Benzyl Alcohol
Explorative application of selenium catalysts in the oxidation of benzyl alcohol. Hanane Achibat,b Luca Sancineto,a Martina Palomba,a Laura Abenante,a Maria Teresa Sarro,a Mostafa Khouilib and Claudio Santi*a a Group of Catalysis and Organic Green Chemistry, Department of Pharmaceutical Sciences, University of Perugia, Via del Liceo 1, Perugia 06100, Italy – [email protected] b Laboratoire de Chimie Organique & Analytique, Université Sultan Moulay Slimane, Faculté des Sciences et Techniques, BP 523, 23000 Béni-Mellal (Morocco) Abstract: Oxidation mediated by hydrogen peroxide needs to be accelerate by approrpiate catalyst in order to be completed in a reasonable reaction time. As a part of our investigation in the use of organoselenium cataysts in bio-mimetic oxidative protocol we reported here some preliminary results on the oxidation of benzyl alcohol into the corresponding benzoic acid. Keywords: alcohol; oxidation; selenium; catalysis; carboxylic acids; hydrogen peroxide; green chemistry During the last years, some of us introduced the term “Bio-Logic-catalysis” to indicate the bioinspired use of organoselenium catalysts in some oxidation reactions (Fig. 1). These were effected using hydrogen peroxide as reactive species of oxygen, water as medium and seleninic acid as the catalyst involved in a mechanism that has been demonstrated to be very similar to that of the naturally occurring enzyme glutathione peroxidase.1 Following this protocol, the direct 1,2 dihydroxylation of olefins was carried out in appreciable yield and with a significant chemo and stereocontrol.2 Similarly, the oxidation of aldehydes to the corresponding carboxylic acids or esters can be easily achieved under mild conditions, which is normally associated to a high level of atom economy.3 1 C. -
Functional Group Manipulation Usin Organoselenium Reagents
22 Reich Accounts of Chemical Research (25), bound covalently or by physical forces to the possibilities. One is that cosynthetase alters the con- enzyme system, is then converted into uro’gen-I11 (1) formation of the deaminase-bilane complex to direct by an intramolecular rearrangement which directly cyclization of 25 at C-16. There are indication^",^^ that affects only ring D and the two carbons which become deaminase associates with cosynthetase, and it has been C-15 and C-20. The nature of the intermediate between ~uggested”~,~~that cosynthetase acts as a “specifier the bilane and uro’gen-111 remains to be established, protein” in the way lactoalbumiri works during the and this leads to the concluding section. biosynthesis of lactose. The other possibility is that the Prospect. In the presence of deaminase alone, and bilane (25) is the product from deaminase but is then also nonenzymically, the cyclization of bilane (25) occurs the substrate for cosynthetase which brings about ring at C-19 to produce 26, leading to uro’gen-I (11). We closure with rearrangement to produce uro’gen-I11 suggest that in the presence of cosynthetase cyclization specifically. occurs at C-16 rather than at (2-19 (Scheme XIII). The Work is in hand on these aspects and on the problem postulated attack at C-16 would produce the spiro of the structure of the intermediate5’ between the bilane intermediate 27; the labeling arising from 25b and 25c and uro‘gen-111. It will be good to have the answers to is shown. Fragmentation and cyclization again as il- the few remaining questions.