Myeloperoxidase Selectively Binds and Selectively Kills Microbes †

Total Page:16

File Type:pdf, Size:1020Kb

Myeloperoxidase Selectively Binds and Selectively Kills Microbes † INFECTION AND IMMUNITY, Jan. 2011, p. 474–485 Vol. 79, No. 1 0019-9567/11/$12.00 doi:10.1128/IAI.00910-09 Copyright © 2011, American Society for Microbiology. All Rights Reserved. Myeloperoxidase Selectively Binds and Selectively Kills Microbesᰔ† Robert C. Allen1* and Jackson T. Stephens, Jr.2 Creighton University, School of Medicine, Department of Pathology, Omaha, Nebraska,1 and ExOxEmis, Inc., Little Rock, Arkansas2 Received 11 August 2009/Returned for modification 2 October 2009/Accepted 13 October 2010 Myeloperoxidase (MPO) is reported to selectively bind to bacteria. The present study provides direct evidence of MPO binding selectivity and tests the relationship of selective binding to selective killing. The ؊ microbicidal effectiveness of H2O2 and of OCl was compared to that of MPO plus H2O2. Synergistic microbicidal action was investigated by combining Streptococcus sanguinis,aH2O2-producing microbe showing low MPO binding, with high-MPO-binding Escherichia coli, Staphylococcus aureus,orPseudomonas aeruginosa without exogenous H2O2, with and without MPO, and with and without erythrocytes (red blood cells [RBCs]). Selectivity of MPO microbicidal action was conventionally measured as the MPO MIC and minimal bacteri- cidal concentration (MBC) for 82 bacteria including E. coli, P. aeruginosa, S. aureus, Enterococcus faecalis, ؊ Streptococcus pyogenes, Streptococcus agalactiae, and viridans streptococci. Both H2O2 and OCl destroyed RBCs at submicrobicidal concentrations. Nanomolar concentrations of MPO increased H2O2 microbicidal action 1,000-fold. Streptococci plus MPO produced potent synergistic microbicidal action against all microbes tested, and RBCs caused only a small decrease in potency without erythrocyte damage. MPO directly killed H2O2- producing S. pyogenes but was ineffective against non-H2O2-producing E. faecalis. The MPO MICs and MBCs for E. coli, P. aeruginosa, and S. aureus were significantly lower than those for E. faecalis. The streptococcal studies showed much higher MIC/MBC results, but such testing required lysed horse blood-supplemented medium, thus preventing valid comparison of these results to those for the other microbes. E. faecalis MPO binding is reportedly weak compared to binding of E. coli, P. aeruginosa, and S. aureus but strong compared to binding of streptococci. Selective MPO binding results in selective killing. Ϫ The microbicidal activities of H2O2 and especially OCl are against Gram-positive and Gram-negative bacteria, as well as potent, but such activities are best achieved in the absence of yeast and fungi (23). Of the mammalian peroxidases, MPO is competing substrates. The reactivities of these agents are in- unique in its ability to catalyze the H2O2-dependent oxidation discriminate and capable of damaging mechanisms of immune of ClϪ to OClϪ. Such haloperoxidase activity is required for defense as well as destroying microbes. Alexander Fleming effective microbe killing (22). In addition to the requirement of Ϫ appreciated this relationship, stating that “leukocytes are more H2O2 for OCl production, H2O2 also directly reacts with sensitive to the action of chemical antiseptics than are the Ϫ 1 OCl to produce singlet molecular oxygen ( O2*), a potent bacteria, and, in view of this, it is unlikely that any of these electrophilic oxygenating agent (21). The microbicidal action antiseptics have the power of penetrating into the tissues and of MPO involves highly exergonic oxygenation reactions. destroying the bacteria without first killing the tissues them- These wet combustion reactions yield excited carbonyl prod- selves” (16). ucts that relax with chemiluminescence (2, 3). Healthy human adults produce about 100 billion neutrophil After leaving the blood, neutrophils migrate into cavities leukocytes per day. After a circulating lifetime of about 10 h, such as the mouth (38) and vagina (11). These spaces are these neutrophils leave the blood to enter the body tissues (8). characterized by acidic pH and the presence of flora rich in Myeloperoxidase (MPO), a 145-kDa dimeric alpha-heme halo- lactic acid bacteria (LAB). It is reasonable to assume that the peroxidase present in azurophilic granules, makes up approx- neutrophils that have migrated into the acid milieu of the imately 5% of the dry weight of the neutrophil (33). If a mouth or vagina eventually disintegrate, releasing their MPO neutrophil is assumed to have a cell volume of 450 fl, a specific content into these environments, and that this released MPO is gravity of 1.1, and a cell water content of 84%, healthy human available to interact with microbes of the resident flora. adults synthesize about 2.8 ␮mol (i.e., 0.4 g) of MPO per day. MPO selectively binds to Gram-negative and many Gram- Furthermore, the production of neutrophils and the MPO con- positive bacteria. However, streptococci, especially viridans tent per neutrophil are markedly increased in states of inflam- streptococci, show little MPO binding (4, 6). Viridans strepto- mation and with granulocyte colony-stimulating factor (G- cocci are a major constituent of normal mouth flora (20). As CSF) treatment (7). members of the LAB, streptococci are cytochrome deficient MPO exerts potent and broad-spectrum microbicidal action and catalase negative and produce lactic acid and H2O2 as metabolic products (24). The rates of H2O2 production by * Correspondent author. Mailing address: Department of Pathology, Streptococcus sanguinis and Streptococcus mitis are reported to Creighton University Medical Center, 601 North 30th Street, Omaha, NE be in the range of 12 to 67 nanomoles/min/mg of dry weight 68113. Phone: (402) 280-4326. Fax: (402) 280-5247. E-mail: RobertAllen (10). Another study of Streptococcus oralis and S. sanguinis @creighton.edu. 6 ᰔ reported a range of 1 to 5 nmol/min/10 CFU (18). These rates Published ahead of print on 25 October 2010. † The authors have paid a fee to allow immediate free access to this of H2O2 production are adequate to drive MPO oxidation of Ϫ Ϫ Ϫ article. Cl to OCl and for H2O2 reaction with OCl to produce 474 VOL. 79, 2011 MPO SELECTIVELY BINDS AND KILLS MICROBES 475 1 O2*. At relatively low MPO concentrations, a H2O2-produc- remove remaining leukocytes. The centrifugation and aspiration steps were re- ing LAB showing low MPO binding might escape damage. peated, and the erythrocyte pellet was suspended and diluted with NS to a 8 Furthermore, the streptococcus-generated H O would be concentration of 10 RBCs per ml by hemocytometer count. 2 2 Erythrocytes (0.1 ml containing 107 RBCs) were added to the microbe sus- available to drive combustive reactions against competing mi- pensions where indicated. Human RBCs contain catalase, i.e., H2O2:H2O2 oxi- crobes showing higher MPO binding. doreductase, an enzyme that catalyzes the destruction of H2O2 producing H2O The present report compares the microbicidal capacities of and O2. The mechanism for removal of H2O2 in human erythrocytes is more than Ϫ 90% dependent on catalase action (28). In addition to competitive destruction of H2O2, OCl , and nanomolar MPO plus low concentrations of H2O2, erythrocytes can directly react with oxidizing agents and, thus, compete H2O2. The potency and selectivity of MPO microbicidal action with microbes for available reactants. RBCs are susceptible to damage by high Ϫ are illustrated using either streptococci or glucose oxidase concentrations of H2O2 and lower concentrations of OCl . Introducing RBCs (GO) to generate H2O2. The selectivity of microbicidal action into the reaction mixture provides a means for assessing the specificity of the was conventionally assessed by measuring the MIC and mini- reactants for the microbe relative to the erythrocyte. mal bactericidal concentration (MBC) of MPO against a large Following microbe-RBC incubation and centrifugation, the hemoglobin (Hgb) that remains in the pellet is proportional to the remaining intact erythrocytes, spectrum of clinical bacterial isolates. i.e., to RBC survival. Loss of Hgb from the pellet and its appearance in the (Portions of this research were presented at the 2008 Inter- supernatant indicate hemolysis, i.e., the destruction of RBC membrane integrity national Conference on Gram Positive Pathogens, Omaha, and release of cytoplasmic Hgb into the medium. The degree of hemolysis can be NE, 5 to 8 October 2008, and at the 48th Interscience Confer- assessed by the distribution of Hgb in the pellet and supernatant. Complete hemolysis with Hgb destruction results in the disappearance of Hgb from both ence on Antimicrobial Agents-Infectious Diseases Society of the pellet and supernatant. In addition to the oxidative reactants tested, micro- America 46th Annual Meeting, Washington, DC, 25 to 28 bial toxins can also produce hemolysis and Hgb destruction. October 2008, poster A1-3497). The concentrations of Hgb in the pellet and supernatant were measured by a derivative spectroscopic modification of the hemiglobincyanide (Drabkin) method (27). A suspension of 107 RBCs per ml yielded 0.2 to 0.3 mg of Hgb. The MATERIALS AND METHODS total Hgb of the supernatant and pellet was measured in the control and was Reagents and enzymes. Stock H2O2 and NaOCl solutions were prepared and expressed as unity, i.e., 1.0. The distribution of Hgb between the pellet and quantified. The concentration of the H2O2 stock solution was verified by mea- supernatant was expressed as a proportion of 1.0. This approach provides a ε suring its UV absorbance spectrum using a 240-nm extinction coefficient ( 240)of rough but useful gauge of hemolytic activity. Small losses of Hgb from the pellet Ϫ1 ⅐ Ϫ1 ε Ϫ1 ⅐ Ϫ1 43.6 M cm and a 300-nm extinction coefficient ( 300) of 1.0 M cm . to the supernatant are an expected consequence of the preparation and exper- The concentration of the NaOCl stock solution was verified by measuring its imental treatment, but large losses to the supernatant indicate active hemolysis. ε absorbance spectrum using a 292-nm extinction coefficient ( 292)of350 Complete destruction of Hgb is indicated by a total loss from the pellet and MϪ1 ⅐ cmϪ1. supernatant. ؊ Porcine MPO, EC 1.11.1.7, was produced by ExOxEmis, Inc.
Recommended publications
  • Activation of Microsomal Glutathione S-Transferase. in Tent-Butyl Hydroperoxide-Induced Oxidative Stress of Isolated Rat Liver
    Activation of Microsomal Glutathione S-Transferase. in tent-Butyl Hydroperoxide-Induced Oxidative Stress of Isolated Rat Liver Yoko Aniya'° 2 and Ai Daido' 'Laboratory of Physiology and Pharmacology , School of Health Sciences, 2Research Center of Comprehensive Medicine, Faculty of Medicine, University of the Ryukyus, 207 Uehara, Nishihara, Okinawa 903-01, Japan Received May 10, 1994 Accepted June 17, 1994 ABSTRACT-The activation of microsomal glutathione S-transferase in oxidative stress was investigated by perfusing isolated rat liver with 1 mM tert-butyl hydroperoxide (t-BuOOH). When the isolated liver was per fused with t-BuOOH for 7 min and 10 min, microsomal, but not cytosolic, glutathione S-transferase activ ity was increased 1.3-fold and 1.7-fold, respectively, with a concomitant decrease in glutathione content. A dimer protein of microsomal glutathione S-transferase was also detected in the t-BuOOH-perfused liver. The increased microsomal glutathione S-transferase activity after perfusion with t-BuOOH was reversed by dithiothreitol, and the dimer protein of the transferase was also abolished. When the rats were pretreated with the antioxidant a-tocopherol or the iron chelator deferoxamine, the increases in microsomal glutathione S-transferase activity and lipid peroxidation caused by t-BuOOH perfusion of the isolated liver was prevented. Furthermore, the activation of microsomal GSH S-transferase by t-BuOOH in vitro was also inhibited by incubation of microsomes with a-tocopherol or deferoxamine. Thus it was confirmed that liver microsomal glutathione S-transferase is activated in the oxidative stress caused by t-BuOOH via thiol oxidation of the enzyme. Keywords: Enzyme activation, Glutathione S-transferase, Liver perfusion, Oxidative stress, tert-Butyl hydroperoxide Glutathione (GSH) S-transferases (EC 2.
    [Show full text]
  • The Peroxiredoxin Tpx1 Is Essential As a H2O2 Scavenger During Aerobic Growth in Fission Yeast Mo´Nica Jara,* Ana P
    Molecular Biology of the Cell Vol. 18, 2288–2295, June 2007 The Peroxiredoxin Tpx1 Is Essential as a H2O2 Scavenger during Aerobic Growth in Fission Yeast Mo´nica Jara,* Ana P. Vivancos,* Isabel A. Calvo, Alberto Moldo´n, Miriam Sanso´, and Elena Hidalgo Departament de Cie`ncies Experimentals i de la Salut, Universitat Pompeu Fabra, E-08003 Barcelona, Spain Submitted November 27, 2006; Revised March 16, 2007; Accepted March 26, 2007 Monitoring Editor: Thomas Fox Peroxiredoxins are known to interact with hydrogen peroxide (H2O2) and to participate in oxidant scavenging, redox signal transduction, and heat-shock responses. The two-cysteine peroxiredoxin Tpx1 of Schizosaccharomyces pombe has been characterized as the H2O2 sensor that transduces the redox signal to the transcription factor Pap1. Here, we show that Tpx1 is essential for aerobic, but not anaerobic, growth. We demonstrate that Tpx1 has an exquisite sensitivity for its substrate, which explains its participation in maintaining low steady-state levels of H2O2. We also show in vitro and in vivo that inactivation of Tpx1 by oxidation of its catalytic cysteine to a sulfinic acid is always preceded by a sulfinic acid form in a covalently linked dimer, which may be important for understanding the kinetics of Tpx1 inactivation. Furthermore, we provide evidence that a strain expressing Tpx1.C169S, lacking the resolving cysteine, can sustain aerobic growth, and we show that small reductants can modulate the activity of the mutant protein in vitro, probably by supplying a thiol group to substitute for cysteine 169. INTRODUCTION available to form a disulfide bond; the source of the reducing equivalents for regenerating this thiol is not known, al- Peroxiredoxins (Prxs) are a family of antioxidant enzymes though glutathione (GSH) has been proposed to serve as the that reduce hydrogen peroxide (H2O2) and/or alkyl hy- electron donor in this reaction (Kang et al., 1998b).
    [Show full text]
  • Entropy Drives Selective Fluorine Recognition in the Fluoroacetyl–Coa
    Entropy drives selective fluorine recognition in PNAS PLUS the fluoroacetyl–CoA thioesterase from Streptomyces cattleya Amy M. Weeksa,1,2, Ningkun Wanga,1,3, Jeffrey G. Peltonb, and Michelle C. Y. Changa,c,4 aDepartment of Chemistry, University of California, Berkeley, CA 94720-1460; bQB3 Institute, University of California, Berkeley, CA 94720-1460; and cDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720-1460 Edited by Jerrold Meinwald, Cornell University, Ithaca, NY, and approved January 17, 2018 (received for review September 28, 2017) Fluorinated small molecules play an important role in the design of ognition of the fluorine substituent itself, the high polarization of bioactive compounds for a broad range of applications. As such, the C-F bond creates an opportunity for dipolar interactions to there is strong interest in developing a deeper understanding of occur with protein-based functional groups (14, 15), which appears how fluorine affects the interaction of these ligands with their to play a key role in the increased potency of ciprofloxacin (Cipro) targets. Given the small number of fluorinated metabolites iden- compared with analogs lacking the fluorine substituent (16, 17). tified to date, insights into fluorine recognition have been pro- Despite the strong interest in fluorine–protein interactions, vided almost entirely by synthetic systems. The fluoroacetyl–CoA there are few systems in which evolutionarily optimized inter- thioesterase (FlK) from Streptomyces cattleya thus provides a actions between ligand and receptor can be studied given the unique opportunity to study an enzyme–ligand pair that has been limited existence of naturally occurring fluorinated metabolites evolutionarily optimized for a surprisingly high 106 selectivity for a and macromolecules that interact with them.
    [Show full text]
  • The Selectivity of the Na /K
    RESEARCH ARTICLE The selectivity of the Na+/K+-pump is controlled by binding site protonation and self-correcting occlusion Huan Rui1, Pablo Artigas2, BenoıˆtRoux1* 1Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, United States; 2Department of Cell Physiology and Molecular Biophysics, Texas Tech University Health Sciences Center, Lubbock, United States Abstract The Na+/K+-pump maintains the physiological K+ and Na+ electrochemical gradients across the cell membrane. It operates via an ’alternating-access’ mechanism, making iterative transitions between inward-facing (E1) and outward-facing (E2) conformations. Although the general features of the transport cycle are known, the detailed physicochemical factors governing the binding site selectivity remain mysterious. Free energy molecular dynamics simulations show that the ion binding sites switch their binding specificity in E1 and E2. This is accompanied by small structural arrangements and changes in protonation states of the coordinating residues. Additional computations on structural models of the intermediate states along the conformational transition pathway reveal that the free energy barrier toward the occlusion step is considerably increased when the wrong type of ion is loaded into the binding pocket, prohibiting the pump cycle from proceeding forward. This self-correcting mechanism strengthens the overall transport selectivity and protects the stoichiometry of the pump cycle. DOI: 10.7554/eLife.16616.001 Introduction *For correspondence: roux@ The Na+/K+-pump is a primary active membrane transporter present in nearly all animal cells. It uchicago.edu belongs to the P-type ATPase family, which utilizes the energy released from ATP hydrolysis to Competing interests: The move ions against their concentration gradients across a membrane barrier.
    [Show full text]
  • Microbial Peroxidases and Their Applications
    International Journal of Scientific & Engineering Research Volume 12, Issue 2, February-2021 ISSN 2229-5518 474 Microbial Peroxidases and their applications Divya Ghosh, Saba Khan, Dr. Sharadamma N. Divya Ghosh is currently pursuing master’s program in Life Science in Mount Carmel College, Bangalore, India, Ph: 9774473747; E- mail: [email protected]; Saba Khan is currently pursuing master’s program in Life Science in Mount Carmel College, Bangalore, India, Ph: 9727450944; E-mail: [email protected]; Dr. Sharadamma N is an Assistant Professor in Department of Life Science, Mount Carmel College, Autonomous, Bangalore, Karnataka- 560052. E-mail: [email protected] Abstract: Peroxidases are oxidoreductases that can convert many compounds into their oxidized form by a free radical mechanism. This peroxidase enzyme is produced by microorganisms like bacteria and fungi. Peroxidase family includes many members in it, one such member is lignin peroxidase. Lignin peroxidase has the potential to degrade the lignin by oxidizing phenolic structures in it. The microbes that have shown efficient production of peroxidase are Bacillus sp., Providencia sp., Streptomyces, Pseudomonas sp. These microorganisms were optimized to produce peroxidase efficiently. These microbial strains were identified by 16S rDNA and rpoD gene sequences and Sanger DNA sequencing techniques. There are certain substrates on which Peroxidase acts are guaiacol, hydrogen peroxide, etc. The purification of peroxidase was done by salt precipitation, ion-exchange chromatography, dialysis, anion exchange, and molecular sieve chromatography method. The activity of the enzyme was evaluated with different parameters like enzyme activity, protein concentration, specific activity, total activity, the effect of heavy metals, etc.
    [Show full text]
  • Structural and Functional Studies of Rubrerythrin From
    STRUCTURAL AND FUNCTIONAL STUDIES OF RUBRERYTHRIN FROM DESULFOVIBRIO VULGARIS by SHI JIN (Under the direction of Dr. Donald M. Kurtz, Jr.) ABSTRACT Rubrerythrin (Rbr), found in anaerobic or microaerophilic bacteria and archaea, is a non-heme iron protein containing an oxo-bridged diiron site and a rubredoxin-like [Fe(SCys)4] site. Rbr has NADH peroxidase activity and it has been proposed as one of the key enzyme pair (Superoxide Reductase/Peroxidase) in the oxidative stress protection system of anaerobic microorganisms. In order to probe the mechanism of the electron pathway in Rbr peroxidase reaction, X-ray crystallography and rapid reaction techniques were used. Recently, the high-resolution crystal structures of reduced Rbr and its azide adduct were determined. Detailed information of the oxidation state changes of the irons at the metal-binding sites during the oxidation of Rbr by hydrogen peroxide was obtained using stopped-flow spectrophotometry and freeze quench EPR. The structures and activities of Rbrs with Zn(II) ions substituted for iron(III) ions at different metal-binding sites, which implicate the influence of positive divalent metal ions to the Rbr, are also investigated. The molecular mechanism for Rbr peroxidase reaction during the turnover based on results from X-ray crystallography and kinetic studies is proposed. INDEX WORDS: Rubrerythrin, Desulfovibrio vulgaris, NADH peroxidase, Alternative oxidative stress defense system, Crystal structures, Oxidized form, Reduced form, Azide adduct, Hydrogen peroxide, Internal electron transfer, Zinc ion derivatives STRUCTURAL AND FUNCTIONAL STUDIES OF RUBRERYTHRIN FROM DESULFOVIBRIO VULGARIS by SHI JIN B.S., Peking University, P. R. China, 1998 A Dissertation Submitted to the Graduate Faculty of The University Georgia in Partial Fulfillment of the Requirements for the Degree DOCTOR OF PHILOSOPHY ATHENS, GEORGIA 2002 © 2002 Shi Jin All Rights Reserved STRUCTURAL AND FUNCTIONAL STUDIES OF RUBRERYTHRIN FROM DESULFOVIBRIO VULGARIS by SHI JIN Approved: Major Professor: Donald M.
    [Show full text]
  • New Automatically Built Profiles for a Better Understanding of the Peroxidase Superfamily Evolution
    University of Geneva Practical training report submitted for the Master Degree in Proteomics and Bioinformatics New automatically built profiles for a better understanding of the peroxidase superfamily evolution presented by Dominique Koua Supervisors: Dr Christophe DUNAND Dr Nicolas HULO Laboratory of Plant Physiology, Dr Christian J.A. SIGRIST University of Geneva Swiss Institute of Bioinformatics PROSITE group. Geneva, April, 18th 2008 Abstract Motivation: Peroxidases (EC 1.11.1.x), which are encoded by small or large multigenic families, are involved in several important physiological and developmental processes. These proteins are extremely widespread and present in almost all living organisms. An important number of haem and non-haem peroxidase sequences are annotated and classified in the peroxidase database PeroxiBase (http://peroxibase.isb-sib.ch). PeroxiBase contains about 5800 peroxidase sequences classified as haem peroxidases and non-haem peroxidases and distributed between thirteen superfamilies and fifty subfamilies, (Passardi et al., 2007). However, only a few classification tools are available for the characterisation of peroxidase sequences: InterPro motifs, PRINTS and specifically designed PROSITE profiles. However, these PROSITE profiles are very global and do not allow the differenciation between very close subfamily sequences nor do they allow the prediction of specific cellular localisations. Due to the rapid growth in the number of available sequences, there is a need for continual updates and corrections of peroxidase protein sequences as well as for new tools that facilitate acquisition and classification of existing and new sequences. Currently, the PROSITE generalised profile building manner and their usage do not allow the differentiation of sequences from subfamilies showing a high degree of similarity.
    [Show full text]
  • Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater
    University of Windsor Scholarship at UWindsor Electronic Theses and Dissertations Theses, Dissertations, and Major Papers 3-10-2019 Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater Neda Mashhadi University of Windsor Follow this and additional works at: https://scholar.uwindsor.ca/etd Recommended Citation Mashhadi, Neda, "Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater" (2019). Electronic Theses and Dissertations. 7646. https://scholar.uwindsor.ca/etd/7646 This online database contains the full-text of PhD dissertations and Masters’ theses of University of Windsor students from 1954 forward. These documents are made available for personal study and research purposes only, in accordance with the Canadian Copyright Act and the Creative Commons license—CC BY-NC-ND (Attribution, Non-Commercial, No Derivative Works). Under this license, works must always be attributed to the copyright holder (original author), cannot be used for any commercial purposes, and may not be altered. Any other use would require the permission of the copyright holder. Students may inquire about withdrawing their dissertation and/or thesis from this database. For additional inquiries, please contact the repository administrator via email ([email protected]) or by telephone at 519-253-3000ext. 3208. Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater By Neda Mashhadi A Dissertation Submitted to the Faculty of Graduate Studies through the Department of Chemistry and Biochemistry in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy at the University of Windsor Windsor, Ontario, Canada 2019 © 2019 Neda Mashhadi Oxidative Polymerization of Heterocyclic Aromatics Using Soybean Peroxidase for Treatment of Wastewater by Neda Mashhadi APPROVED BY: _____________________________ A.
    [Show full text]
  • Directed Evolution of a G Protein-Coupled Receptor for Expression, Stability, and Binding Selectivity
    Directed evolution of a G protein-coupled receptor for expression, stability, and binding selectivity Casim A. Sarkar*†‡, Igor Dodevski*†, Manca Kenig*§, Stefan Dudli*, Anja Mohr*, Emmanuel Hermans¶, and Andreas Plu¨ckthun*ʈ *Biochemisches Institut, Universita¨t Zu¨ rich, Winterthurerstrasse 190, CH-8057 Zu¨rich, Switzerland; and ¶Laboratoire de Pharmacologie Expe´rimentale, Universite´catholique de Louvain, Avenue Hippocrate 54.10, B-1200 Bruxelles, Belgium. Edited by William F. DeGrado, University of Pennsylvania, Philadelphia, PA, and approved July 18, 2008 (received for review April 1, 2008) We outline a powerful method for the directed evolution of sequence of a GPCR, keeping all other variables constant, to integral membrane proteins in the inner membrane of Escherichia yield more functionally expressed protein in a convenient het- coli. For a mammalian G protein-coupled receptor, we arrived at a erologous host, Escherichia coli. We used as a model system the sequence with an order-of-magnitude increase in functional ex- rat neurotensin receptor-1 (NTR1), which has been shown to pression that still retains the biochemical properties of wild type. give a detectable yield in E. coli (10, 11) but which still needs to This mutant also shows enhanced heterologous expression in be improved to allow more convenient preparation of milligram eukaryotes (12-fold in Pichia pastoris and 3-fold in HEK293T cells) quantities of receptor. and greater stability when solubilized and purified, indicating that Detailed characterization of the best variant from the selec- the biophysical properties of the protein had been under the tion reported here reveals that it exhibits an order-of-magnitude pressure of selection.
    [Show full text]
  • Bisphenol a Binding Promiscuity
    Research Article Bisphenol A Binding Promiscuity: A Virtual Journey through the Universe of Proteins Elena Lo Piparo1#, Lydia Siragusa2#, Frederic Raymond3, Giovanna Ilaria Passeri2, Gabriele Cruciani4 and Benoît Schilter1 1Food Safety Research, Nestlé Research, Lausanne, Switzerland; 2Molecular Discovery Limited, London, UK; 3Multi-Omics Profiling, Nestlé Research, Lausanne, Switzerland; 4Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy Abstract Significant efforts are currently being made to move toxicity testing from animal experimentation towards human-relevant, mechanism-based approaches. In this context, the identification of the molecular target(s) responsible for mechanisms of action is an essential step. Inspired by the recent concept of polypharmacology (the ability of drugs to interact with mul- tiple targets), we argue that whole proteome virtual screening may become a breakthrough tool in toxicology as it reflects the true complexity of chemical-biological interactions. We investigated the value of performing ligand-protein binding prediction screening across the full proteome to identify new mechanisms of action for food chemicals. We applied the new approach to make a broader comparison between bisphenol A (BPA) (food-packaging chemical) and the endog- enous estrogen 17β-estradiol (EST). Applying a novel, high-throughput ligand-protein binding prediction tool (BioGPS) using the Amazon Web Services (AWS) cloud (to speed-up the calculation), we investigated the value of performing in silico screening across the full proteome (all human and rodent x-ray protein structures available in the Protein Data Bank). The strong correlation between in silico predictions and available in vitro data demonstrated the high predictive power of the method. The most striking result was that BPA was predicted to bind to many more proteins than previously described, most of which also appear to bind EST.
    [Show full text]
  • NADH PEROXIDASE Ph
    Enzymatic Assay of NADH PEROXIDASE (EC 1.11.1.1) PRINCIPLE: NADH Peroxidase ß-NADH + H2O2 > ß-NAD + 2H2O Abbreviations used: ß-NADH = ß-Nicotinamide Adenine Dinucleotide, Reduced Form ß-NAD = ß-Nicotinamide Adenine Dinucleotide, Oxidized Form CONDITIONS: T = 25°C, pH 6.0, A365nm, Light path = 1 cm METHOD: Continuous Spectrophotometric Rate Determination REAGENTS: A. 200 mM Tris Acetate Buffer, pH 6.0 at 25°C (Prepare 100 ml in deionized water using Trizma Acetate, Sigma Prod. No. T-1258. Adjust to pH 6.0 at 25°C with 1 M HCl.) B. 0.30% (w/w) Hydrogen Peroxide Solution (H2O2) (Prepare 10 ml in deionized water using Hydrogen Peroxide 30% (w/w) Solution, Sigma Prod. No. H-1009.) C. 12 mM ß-Nicotinamide Adenine Dinucleotide, Reduced Form, Solution (NADH) (Dissolve the contents of one 10 mg vial of ß-Nicotinamide Adenine Dinucleotide, Reduced Form, Sodium Salt, Sigma Stock No. 340-110, in the appropriate volume of deionized water.) D. NADH Peroxidase Enzyme Solution (Immediately before use, prepare a solution containing 0.2 - 0.4 unit of NADH Peroxidase in cold deionized water.) SPHYDR04 Page 1 of 3 Revised: 01/17/97 Enzymatic Assay of NADH PEROXIDASE (EC 1.11.1.1) PROCEDURE: Pipette (in milliliters) the following reagents into suitable cuvettes: Test Blank Reagent A (Buffer) 3.00 3.00 Reagent C (NADH) 0.10 0.10 Reagent D (Enzyme Solution) 0.10 ------ Deionized Water ------ 0.10 Mix by inversion and equilibrate to 25°C. Monitor the baseline at A365nm for 5 minutes in order to determine any NADH oxidase activity which may be present.1 Then add: Reagent B (H2O2) 0.10 0.10 Immediately mix by inversion and monitor the decrease in A365nm for approximately 5 minutes.
    [Show full text]
  • Human Pharmacology of Positive GABA-A Subtype-Selective Receptor Modulators for the Treatment of Anxiety
    www.nature.com/aps REVIEW ARTICLE Human pharmacology of positive GABA-A subtype-selective receptor modulators for the treatment of anxiety Xia Chen1,2,3,4, Joop van Gerven4,5, Adam Cohen4 and Gabriel Jacobs4 Anxiety disorders arise from disruptions among the highly interconnected circuits that normally serve to process the streams of potentially threatening stimuli. The resulting imbalance among these circuits can cause a fundamental misinterpretation of neural sensory information as threatening and can lead to the inappropriate emotional and behavioral responses observed in anxiety disorders. There is considerable preclinical evidence that the GABAergic system, in general, and its α2- and/or α5-subunit- containing GABA(A) receptor subtypes, in particular, are involved in the pathophysiology of anxiety disorders. However, the clinical efficacy of GABA-A α2-selective agonists for the treatment of anxiety disorders has not been unequivocally demonstrated. In this review, we present several human pharmacological studies that have been performed with the aim of identifying the pharmacologically active doses/exposure levels of several GABA-A subtype-selective novel compounds with potential anxiolytic effects. The pharmacological selectivity of novel α2-subtype-selective GABA(A) receptor partial agonists has been demonstrated by their distinct effect profiles on the neurophysiological and neuropsychological measurements that reflect the functions of multiple CNS domains compared with those of benzodiazepines, which are nonselective, full GABA(A) agonists. Normalizing the undesired pharmacodynamic side effects against the desired on-target effects on the saccadic peak velocity is a useful approach for presenting the pharmacological features of GABA(A)-ergic modulators. Moreover, combining the anxiogenic symptom provocation paradigm with validated neurophysiological and neuropsychological biomarkers may provide further construct validity for the clinical effects of novel anxiolytic agents.
    [Show full text]