Functional Group Manipulation Usin Organoselenium Reagents

Total Page:16

File Type:pdf, Size:1020Kb

Functional Group Manipulation Usin Organoselenium Reagents 22 Reich Accounts of Chemical Research (25), bound covalently or by physical forces to the possibilities. One is that cosynthetase alters the con- enzyme system, is then converted into uro’gen-I11 (1) formation of the deaminase-bilane complex to direct by an intramolecular rearrangement which directly cyclization of 25 at C-16. There are indication^",^^ that affects only ring D and the two carbons which become deaminase associates with cosynthetase, and it has been C-15 and C-20. The nature of the intermediate between ~uggested”~,~~that cosynthetase acts as a “specifier the bilane and uro’gen-111 remains to be established, protein” in the way lactoalbumiri works during the and this leads to the concluding section. biosynthesis of lactose. The other possibility is that the Prospect. In the presence of deaminase alone, and bilane (25) is the product from deaminase but is then also nonenzymically, the cyclization of bilane (25) occurs the substrate for cosynthetase which brings about ring at C-19 to produce 26, leading to uro’gen-I (11). We closure with rearrangement to produce uro’gen-I11 suggest that in the presence of cosynthetase cyclization specifically. occurs at C-16 rather than at (2-19 (Scheme XIII). The Work is in hand on these aspects and on the problem postulated attack at C-16 would produce the spiro of the structure of the intermediate5’ between the bilane intermediate 27; the labeling arising from 25b and 25c and uro‘gen-111. It will be good to have the answers to is shown. Fragmentation and cyclization again as il- the few remaining questions. lustrated would generate ~ro’gen-111.~~The spiro Weare glad to have this opportunity to record our debt and system is related to that proposed by Mathewson and thanks to our young colleagues whose courage in this demanding Cor~in~~in 1961, and its intermediacy is consistent with field and experimental skills made the work posible. Their names all the work summarized above. Notice that both 26 are given in the literature references. Weare also grateful for and 27 contain a new sp3 center, and they differ less in financial support from the Nuffield Foundation, Science Re- shape than may appear from a planar diagram. search Council, and Roche Products. Wow does cosynthetase divert the unrearranged bi- (48) R. B. Frydman and G.Feinstein, Biochim. Riophys. Acta, 380, lane to exclusive type-111 formation when in its absence 358 (1974). type I is exclusively formed? We consider here two (49) M. Higuchi and L. Bogorad, Ann. N.Y. Acad. Sci., 24.1.401 (1975). (50) B. Middleton, Cambridge, quoted by A. R. Battersby and E. (46) The alternative, and equivalent. fragmentation from ring .4 would McDonald in ref 2, p 96. simply regenerate an equivalent of the unrearranged bilane ready for (51) The only alternative to the spiro intermediate involves fission of re-formation of the spiro system 27. the C-15/C-16 bond of bilane (25) while it is bound to the enzyme, followed (47) J. H. Mathewson and A. H. Corwin, J. Am. Chem. Soc., 83, 136 by inversion of ring D with strictly no exchange with the medium of the (1961). now separated pyrrole fragment. We find this possibility less attractive. Functional Group Manipulation Usin Organoselenium Reagents HANSJ. REICH Department of Chemisti-3, L’niuersit> of Wisconsin, Madison, Wisconsin 53706 ReceiLed March 13, 1978 The use of second, third, and fourth row elements in The utility of selenium and sulfur is derived from the organic synthesis received its major modern impetus great ease with which a wide variety of organoselenium from the discovery of the Wittig olefin synthesis. Since and organosulfur compounds can be prepared, as well then many applications of silicon, tin, phosphorus, as the facility of transformations of t,hese compounds sulfur, selenium, and other metalloids in organic syn- to effect useful functional group interconversion. Both thesis have been proposed. and a significant number of nucleophilic and electrophilic reagents are readily these procedures are finding their place in routine available for the introduction of selenium. The large organic synthesis. stabilization of carbanions provided b57 sulfur and In this Account some recent developments in the selenium substituents (at least 10-15 pK, units for PhS chemistry of organoselenium compounds which have and PhSe, more for sulfoxides, selenoxides, and synthetic potential are described, with particular em- sulfones’) has resulted in their use as activating groups phasis on the exploitation of chemical properties of for a variety of carbon-carbon bond-forming procedures selenium which differ from those of sulfur. In addition involving organometallic reagents. to work at Wisconsin, research groups headed by The chemistry of sulfur and selenium is very closely Sharpless, Seebach, Grieco, Krief, Nicolaou, and others related. The greater expense of selenium and the have been active in this area.l hazard resulting from its toxicity3 are justifiable only Hans J. Reich was born in 1943 in Danzig, Germany. After a B.Sc. degree (1) For a comprehensive account of synthetic organoselenium chemistry, at the University of Alberta and Ph.D. at UCLA with D. J. Cram, he spent 2 years see H. J. Reich in “Oxidation in Organic Chemistry, Part C”, W. Tra- doing postdoctoral work, first at Cal Tech with J. D. Roberts and then at Harvard hanovsky, Ed., Academic Press, New York, 1978, p 1. with R. 8. Woodward. In 1970, he joined the faculty at the University of (2) F. G. Bordwell et ai., J. Org. Chem., 42, 326 (1977). Wisconsin-Madison, where he is now Associate Professor. He is an Alfred (3) See K. Schwartz and K. D. Pathak, Chem. Scr., SA, 85 (1976), and P. Sloan Fellow and has research interests in the chemistry of the organometalloids D. V. Frost and D. Ingvoldstad, ibid.. 8A, 96 (1975), for reviews on the and their application to organic synthesis. beneficial and harmful effects of dietary selenium. 0001-4842/79/0112-0022$01.00/0 IC 1979 American Chemical Society Vol. 12, 1979 Organoselenium Reagents 23 if there is some qualitative or quantitative chemical Organoselenium Reagents. Most synthetic difference which allows introduction, modification, or transformations using organoselenium reagents have removal of the organoselenium group under conditions involved use of the arylseleno (usually phenylseleno) not possible with sulfur: group, for which the primary source is a diary1 di- (1) Selenium forms weaker c bonds than sulfur; selenide or an aryl selenocyanate. Diphenyl diselenide hence, many reactions which involve cleavage of C-Se, 0-Se, and N-Se bonds are more rapid than cleavage PhMgBr PhSeMgBr 8rz PhSeSePh of analogous bonds to sulfur. In this regard, alkyl selenoxides undergo syn elimination about 1000 times Ag02CCF3 PhSeOzCCF3 as fast as do sulfoxide^,^ [1,3] and [2,3] sigmatropic Ph-Se-Se-Ph -Clz PhSeCl 4 PhSe02CCH3 rearrangements proceed at markedly lower tempera- ~r~ PhSeBr PhSeNR2 ture~,~~~and episelenides spontaneously lose selenium > at room temperature.7-9 is readily available by a Grignard synthesi~.~~,~~Aryl (2) Selenides and selenolate anions are less basiclo and selenocyanates are usually prepared by the reaction of more nucleophilic"J2 than corresponding sulfur com- diazonium salts with KSeCN.1gds20b pounds. Selenoxides are more polar and more basic Powerful nucleophiles attack Ph2Sezat selenium, but than are ~u1foxides.l~ more efficient sources of electrophilic selenium are the (3) Selenium is oxidized somewhat more easily to selenenyl halides (PhSeC1, PhSeBr). Both are crys- Se(IV), but with more difficulty to Se(V1) than the talline, shelf-stable materials which can in turn be corresponding sulfur oxidations. Thus most oxidizing converted to other useful reagents: mixed selenenic agents convert selenides to selenoxides, selenols to anhydrides (PhSe02CCF3,21PhSe02CCH322) or selen- seleninic acids (RSe02H), and hydrogen selenide to enamides (PhSeNR223). selenium dioxide, but higher oxidation states (selenone, Benzeneseleninyl chloride and benzeneseleninic selenonic acid, selenium trioxide) are difficult to anhydride are used for the electrophilic introduction achieve. of the seleninyl Utilization of a nucleophilic (4)Organoselenium compounds are more subject to nucleophilic attack at selenium. Thus a-phenylseleno 0 0 I/ ketones are easily deselenated in the presence of base,14 PhSeCl 2 Ph-Se-C1 and most organoselenium compounds are attacked at 00 selenium by organolithium reagents.15J6 This property 0, II /I Ph-Sese-Ph -+ Se Se permits the convenient synthesis of a-lithio selenides \ 1 \ by cleavage of selenoacetals and -ketals.16a-d 0 Ph (5) Tetracovalent selenium compounds (selenuranes) seleninyl reagent (ArSeO-, benzeneselenenate anion) are usually more stable and more easily prepared than has been reported. Decomposition of the selenoxide 1 corresponding sulfur systems.17 (6) The stereochemical lability of selenoxides is much greater than that of sulfoxides. Selenoxides are readily racemized in neutral or weakly acidic media.ls It is this property of facile acid catalyzed nucleophilic exchange at Se(IV),coupled with resistance to further oxidation 1 3 2 (3, above) that permits benzeneseleninic acids to serve as catalysts for epoxidation of olefins with hydrogen in the presence of sodium hydride and benzyl bromide peroxide (ArSe03H is thought to be the active oxi- leads to the selenoxide 2, presumably by Se-alkylation dant).I9 of the intermediate sodium selenenate 3.25 (4) (a) D. N. Jones, D. Mundy, and R. D. Whitehouse, Chem. Commun., Diphenyl diselenide is reduced to benzeneselenol 86 (1970); (b) H. J. Reich, S. Wollowitz, J. E. Trend, F. Chow, and D. (PhSeH or PhSe-) by a variety of reducing agents of F. Wendleborn, J. Org. Chem., 43, 1697 (1978). which NaBH4 in ethanol is the most convenient. Less (5) (a) K. B. Sharpless and R. F. Lauer, J. Org. Chem., 37,3973 (1972); (b) K. B. Sharpless and R. F. Lauer, J.
Recommended publications
  • Secondary Alkane Sulfonate (SAS) (CAS 68037-49-0)
    Human & Environmental Risk Assessment on ingredients of household cleaning products - Version 1 – April 2005 Secondary Alkane Sulfonate (SAS) (CAS 68037-49-0) All rights reserved. No part of this publication may be used, reproduced, copied, stored or transmitted in any form or by any means, electronic, mechanical, photocopying, recording or otherwise without the prior written permission of the HERA Substance Team or the involved company. The content of this document has been prepared and reviewed by experts on behalf of HERA with all possible care and from the available scientific information. It is provided for information only. Much of the original underlying data which has helped to develop the risk assessment is in the ownership of individual companies. HERA cannot accept any responsibility or liability and does not provide a warranty for any use or interpretation of the material contained in this publication. 1. Executive Summary General Secondary Alkane Sulfonate (SAS) is an anionic surfactant, also called paraffine sulfonate. It was synthesized for the first time in 1940 and has been used as surfactant since the 1960ies. SAS is one of the major anionic surfactants used in the market of dishwashing, laundry and cleaning products. The European consumption of SAS in detergent application covered by HERA was about 66.000 tons/year in 2001. Environment This Environmental Risk Assessment of SAS is based on the methodology of the EU Technical Guidance Document for Risk Assessment of Chemicals (TGD Exposure Scenario) and the HERA Exposure Scenario. SAS is removed readily in sewage treatment plants (STP) mostly by biodegradation (ca. 83%) and by sorption to sewage sludge (ca.
    [Show full text]
  • Enzymatic Encoding Methods for Efficient Synthesis Of
    (19) TZZ__T (11) EP 1 957 644 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C12N 15/10 (2006.01) C12Q 1/68 (2006.01) 01.12.2010 Bulletin 2010/48 C40B 40/06 (2006.01) C40B 50/06 (2006.01) (21) Application number: 06818144.5 (86) International application number: PCT/DK2006/000685 (22) Date of filing: 01.12.2006 (87) International publication number: WO 2007/062664 (07.06.2007 Gazette 2007/23) (54) ENZYMATIC ENCODING METHODS FOR EFFICIENT SYNTHESIS OF LARGE LIBRARIES ENZYMVERMITTELNDE KODIERUNGSMETHODEN FÜR EINE EFFIZIENTE SYNTHESE VON GROSSEN BIBLIOTHEKEN PROCEDES DE CODAGE ENZYMATIQUE DESTINES A LA SYNTHESE EFFICACE DE BIBLIOTHEQUES IMPORTANTES (84) Designated Contracting States: • GOLDBECH, Anne AT BE BG CH CY CZ DE DK EE ES FI FR GB GR DK-2200 Copenhagen N (DK) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • DE LEON, Daen SK TR DK-2300 Copenhagen S (DK) Designated Extension States: • KALDOR, Ditte Kievsmose AL BA HR MK RS DK-2880 Bagsvaerd (DK) • SLØK, Frank Abilgaard (30) Priority: 01.12.2005 DK 200501704 DK-3450 Allerød (DK) 02.12.2005 US 741490 P • HUSEMOEN, Birgitte Nystrup DK-2500 Valby (DK) (43) Date of publication of application: • DOLBERG, Johannes 20.08.2008 Bulletin 2008/34 DK-1674 Copenhagen V (DK) • JENSEN, Kim Birkebæk (73) Proprietor: Nuevolution A/S DK-2610 Rødovre (DK) 2100 Copenhagen 0 (DK) • PETERSEN, Lene DK-2100 Copenhagen Ø (DK) (72) Inventors: • NØRREGAARD-MADSEN, Mads • FRANCH, Thomas DK-3460 Birkerød (DK) DK-3070 Snekkersten (DK) • GODSKESEN,
    [Show full text]
  • An Efficient Synthesis of Porphyrins with Different Meso Substituents That Avoids Scrambling in Aqueous Media
    An Efficient Synthesis of Porphyrins with Different meso Substituents that Avoids Scrambling in Aqueous Media Agnieszka Nowak-Krol, Rémi Plamont, Gabriel Canard, J.A. Edzang, Daniel T. Gryko, Teodor Silviu Balaban To cite this version: Agnieszka Nowak-Krol, Rémi Plamont, Gabriel Canard, J.A. Edzang, Daniel T. Gryko, et al.. An Efficient Synthesis of Porphyrins with Different meso Substituents that Avoids Scrambling inAque- ous Media. Chemistry - A European Journal, Wiley-VCH Verlag, 2015, 21 (4), pp.1488-1498. 10.1002/chem.201403677. hal-01130057 HAL Id: hal-01130057 https://hal.archives-ouvertes.fr/hal-01130057 Submitted on 7 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. An Efficient Synthesis of Porphyrins with Different Meso Substituents that Avoids Scrambling in Aqueous Media Agnieszka Nowak-Król,a,† Rémi Plamont,b,† Gabriel Canard,b,c Judicaelle Andeme Edzang,b,c Daniel T. Grykoa,* and Teodor Silviu Balabanb,* To the memory of Alan Roy Katritzky, magister of heterocyclic chemistry [a] Institute of Organic Chemistry of the Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland E-mail: [email protected] [b] Aix Marseille Université, Centrale Marseille, CNRS, Institut des Sciences Moléculaires de Marseille (iSm2), UMR 7313, Chirosciences, Avenue Escadrille Normandie Niemen, St.
    [Show full text]
  • Of Operation and Control Ion-Exchange Processes For
    TECHNICAL REPORTS SERIES No. 78 Operation and Control Of Ion-Exchange Processes for Treatment of Radioactive Wastes INTERNATIONAL ATOMIC ENERGY AGENCY,VIENNA, 1967 OPERATION AND CONTROL OF ION-EXCHANGE PROCESSES FOR TREATMENT OF RADIOACTIVE WASTES The following States are Members of the International Atomic Energy Agency: AFGHANISTAN GERMANY, FEDERAL NIGERIA ALBANIA REPUBLIC OF NORWAY ALGERIA GHANA PAKISTAN ARGENTINA GREECE PANAMA AUSTRALIA GUATEMALA PARAGUAY AUSTRIA HAITI PERU BELGIUM HOLY SEE PHILIPPINES BOLIVIA HUNGARY POLAND BRAZIL ICELAND PORTUGAL BULGARIA INDIA ROMANIA BURMA INDONESIA SAUDI ARABIA BYELORUSSIAN SOVIET IRAN SENEGAL SOCIALIST REPUBLIC IRAQ SIERRA LEONE CAMBODIA ISRAEL SINGAPORE CAMEROON ITALY SOUTH AFRICA CANADA IVORY COAST SPAIN CEYLON JAMAICA SUDAN CHILE JAPAN SWEDEN CHINA JORDAN SWITZERLAND COLOMBIA KENYA SYRIAN ARAB REPUBLIC CONGO, DEMOCRATIC KOREA, REPUBLIC OF THAILAND REPUBLIC OF KUWAIT TUNISIA COSTA RICA LEBANON TURKEY CUBA LIBERIA UKRAINIAN SOVIET SOCIALIST CYPRUS LIBYA REPUBLIC CZECHOSLOVAK SOCIALIST LUXEMBOURG UNION OF SOVIET SOCIALIST REPUBLIC MADAGASCAR REPUBLICS DENMARK MALI UNITED ARAB REPUBLIC DOMINICAN REPUBLIC MEXICO UNITED KINGDOM OF GREAT ECUADOR MONACO BRITAIN AND NORTHERN IRELAND EL SALVADOR MOROCCO UNITED STATES OF AMERICA ETHIOPIA NETHERLANDS URUGUAY FINLAND NEW ZEALAND VENEZUELA FRANCE NICARAGUA VIET-NAM GABON YUGOSLAVIA The Agency's Statute was approved on 26 October 1956 by the Conference on the Statute of the IAEA held at United Nations Headquarters, New York; it entered into force on 29 July 1957, The Headquarters of the Agency are situated in Vienna. Its principal objective is "to accelerate and enlarge the contribution of atomic energy to peace, health and prosperity throughout the world". © IAEA, 1967 Permission to reproduce or translate the information contained in this publication may be obtained by writing to the International Atomic Energy Agency, Kamtner Ring 11, A-1010 Vienna I, Austria.
    [Show full text]
  • INTRODUCTION to PFAS November 8, 2019
    INTRODUCTION TO PFAS November 8, 2019 trcsolutions.com | PFAS in the News https://pfasproject.com trcsolutions.com 2 Today’s Topics • PFAS Naming Conventions • Physical/Chemical Properties of PFAS • Sources of PFAS and Potentially- affected Sites • Replacement PFAS Chemistry • AFFF • Toxicology 3 PFAS Naming Conventions 4 Acronyms • PFC = Per-fluorinated chemical PFCA • PFAS = Per- and Poly-fluoroalkyl substances Perfluoroalkyl Substances PFAA • PFAA = Perfluoroalkyl acids PFSA • PFOA = Perfluorooctanoic acid (perfluorooctanoate) • PFOS = Perfluorooctane sulfonic acid (perfluorooctane sulfonate) • PFCA = Perfluorocarboxylic acids • PFSA = Perfluorosulfonic acids trcsolutions.com 5 Perfluorinated Compounds (PFCs) PFCs: Do not use this acronym anymore! • PFCs previously used to describe greenhouse gases • PFCs do not include polyfluorinated compounds 6 Quick Chemistry Lesson #1 • Remember: PFAS are Per and Polyfluoroalkyl substances • Per-fluoroalkyl substances: fully fluorinated alkyl tail • Perfluoroalkane carboxylates (or carboxylic acids): PFCAs FFF F F F O COOH = Head F C C C C (PFOA) C C C C OH F PFAAs F FFFFFF Alkyl tail, fully fluorinated • Perfluoroalkane sulfonates (or sulfonic acids): PFSAs FFF F F F F F F C C C C (PFOS) C C C C SO3H SO3H= Head F F FFFFFF 7 Quick Chemistry Lesson #2 • Remember: PFAS are Per and Polyfluoroalkyl substances • Poly-fluoroalkyl substances: non-fluorine atom (typically hydrogen or oxygen) attached to at least one carbon atom in the alkane chain Fluorotelomer Alcohol (8:2 FTOH) FFF F F F F F HH C C C
    [Show full text]
  • Why Nature Chose Selenium Hans J
    Reviews pubs.acs.org/acschemicalbiology Why Nature Chose Selenium Hans J. Reich*, ‡ and Robert J. Hondal*,† † University of Vermont, Department of Biochemistry, 89 Beaumont Ave, Given Laboratory, Room B413, Burlington, Vermont 05405, United States ‡ University of WisconsinMadison, Department of Chemistry, 1101 University Avenue, Madison, Wisconsin 53706, United States ABSTRACT: The authors were asked by the Editors of ACS Chemical Biology to write an article titled “Why Nature Chose Selenium” for the occasion of the upcoming bicentennial of the discovery of selenium by the Swedish chemist Jöns Jacob Berzelius in 1817 and styled after the famous work of Frank Westheimer on the biological chemistry of phosphate [Westheimer, F. H. (1987) Why Nature Chose Phosphates, Science 235, 1173−1178]. This work gives a history of the important discoveries of the biological processes that selenium participates in, and a point-by-point comparison of the chemistry of selenium with the atom it replaces in biology, sulfur. This analysis shows that redox chemistry is the largest chemical difference between the two chalcogens. This difference is very large for both one-electron and two-electron redox reactions. Much of this difference is due to the inability of selenium to form π bonds of all types. The outer valence electrons of selenium are also more loosely held than those of sulfur. As a result, selenium is a better nucleophile and will react with reactive oxygen species faster than sulfur, but the resulting lack of π-bond character in the Se−O bond means that the Se-oxide can be much more readily reduced in comparison to S-oxides.
    [Show full text]
  • Catalysis of Peroxide Reduction by Fast Reacting Protein Thiols Focus Review †,‡ †,‡ ‡,§ ‡,§ ∥ Ari Zeida, Madia Trujillo, Gerardo Ferrer-Sueta, Ana Denicola, Darío A
    Review Cite This: Chem. Rev. 2019, 119, 10829−10855 pubs.acs.org/CR Catalysis of Peroxide Reduction by Fast Reacting Protein Thiols Focus Review †,‡ †,‡ ‡,§ ‡,§ ∥ Ari Zeida, Madia Trujillo, Gerardo Ferrer-Sueta, Ana Denicola, Darío A. Estrin, and Rafael Radi*,†,‡ † ‡ § Departamento de Bioquímica, Centro de Investigaciones Biomedicaś (CEINBIO), Facultad de Medicina, and Laboratorio de Fisicoquímica Biologica,́ Facultad de Ciencias, Universidad de la Republica,́ 11800 Montevideo, Uruguay ∥ Departamento de Química Inorganica,́ Analítica y Química-Física and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, 2160 Buenos Aires, Argentina ABSTRACT: Life on Earth evolved in the presence of hydrogen peroxide, and other peroxides also emerged before and with the rise of aerobic metabolism. They were considered only as toxic byproducts for many years. Nowadays, peroxides are also regarded as metabolic products that play essential physiological cellular roles. Organisms have developed efficient mechanisms to metabolize peroxides, mostly based on two kinds of redox chemistry, catalases/peroxidases that depend on the heme prosthetic group to afford peroxide reduction and thiol-based peroxidases that support their redox activities on specialized fast reacting cysteine/selenocysteine (Cys/Sec) residues. Among the last group, glutathione peroxidases (GPxs) and peroxiredoxins (Prxs) are the most widespread and abundant families, and they are the leitmotif of this review. After presenting the properties and roles of different peroxides in biology, we discuss the chemical mechanisms of peroxide reduction by low molecular weight thiols, Prxs, GPxs, and other thiol-based peroxidases. Special attention is paid to the catalytic properties of Prxs and also to the importance and comparative outlook of the properties of Sec and its role in GPxs.
    [Show full text]
  • Characterisation, Classification and Conformational Variability Of
    Characterisation, Classification and Conformational Variability of Organic Enzyme Cofactors Julia D. Fischer European Bioinformatics Institute Clare Hall College University of Cambridge A thesis submitted for the degree of Doctor of Philosophy 11 April 2011 This dissertation is the result of my own work and includes nothing which is the outcome of work done in collaboration except where specifically indicated in the text. This dissertation does not exceed the word limit of 60,000 words. Acknowledgements I would like to thank all the members of the Thornton research group for their constant interest in my work, their continuous willingness to answer my academic questions, and for their company during my time at the EBI. This includes Saumya Kumar, Sergio Martinez Cuesta, Matthias Ziehm, Dr. Daniela Wieser, Dr. Xun Li, Dr. Irene Pa- patheodorou, Dr. Pedro Ballester, Dr. Abdullah Kahraman, Dr. Rafael Najmanovich, Dr. Tjaart de Beer, Dr. Syed Asad Rahman, Dr. Nicholas Furnham, Dr. Roman Laskowski and Dr. Gemma Holli- day. Special thanks to Asad for allowing me to use early development versions of his SMSD software and for help and advice with the KEGG API installation, to Roman for knowing where to find all kinds of data, to Dani for help with R scripts, to Nick for letting me use his E.C. tree program, to Tjaart for python advice and especially to Gemma for her constant advice and feedback on my work in all aspects, in particular the chemistry side. Most importantly, I would like to thank Prof. Janet Thornton for giving me the chance to work on this project, for all the time she spent in meetings with me and reading my work, for sharing her seemingly limitless knowledge and enthusiasm about the fascinating world of enzymes, and for being such an experienced and motivational advisor.
    [Show full text]
  • A Method for the Production of Sulfate Or Sulfonate Esters
    (19) *EP002851362B1* (11) EP 2 851 362 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C07C 303/24 (2006.01) C07C 303/28 (2006.01) (2006.01) (2006.01) 27.11.2019 Bulletin 2019/48 C07C 305/06 C07C 305/08 C07C 305/20 (2006.01) C07C 305/24 (2006.01) (2006.01) (21) Application number: 13185032.3 C07C 309/73 (22) Date of filing: 18.09.2013 (54) A method for the production of sulfate or sulfonate esters Verfahren zur Herstellung von Sulfat oder Sulfonatestern Procédé pour la production d’esters de sulfate ou de sulfonate (84) Designated Contracting States: (56) References cited: AL AT BE BG CH CY CZ DE DK EE ES FI FR GB • DENIZ GUNES ET AL: "ALIPHATIC THIOETHERS GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO BY S-ALKYLATION OF THIOLS VIA TRIALKYL PL PT RO RS SE SI SK SM TR BORATES", PHOSPHORUS, SULFUR AND SILICON AND THE RELATED ELEMENTS, (43) Date of publication of application: TAYLOR & FRANCIS INC, US, vol. 185, no. 8, 1 25.03.2015 Bulletin 2015/13 January 2010 (2010-01-01), pages 1685-1690, XP008165903, ISSN: 1042-6507, DOI: (73) Proprietor: Ulusal Bor Arastirma Enstitusu 10.1080/10426500903213563 [retrieved on 06520 Ankara (TR) 2010-08-02] • OKI ET AL: "Solvothermal synthesis of carbon (72) Inventors: nanotube-B2O3 nanocomposite using tributyl • Bicak, Niyazi borate as boron oxide source", INORGANIC 34469 Istanbul (TR) CHEMISTRY COMMUNICATIONS, ELSEVIER, • Gunes, Deniz AMSTERDAM, NL, vol.
    [Show full text]
  • 16Th March 2020 Blood Revised
    Blood is the fluid circulating in a closed system of blood vessels and the chambers of the heart It is the medium which transports substances from one part of the body to the other Blood is composed of Plasma Platelets Cells WBCs RBCs (Erythrocytes) Hemoglobin (Hb) is red , oxygen carrying pigment present exclusively in erythrocytes HEMOGLOBIN A conjugated protein containing Globin Protein part ( 4 polypeptide chains- ) 96% of the total Hb mass Varies from species to species( species specificity) Heme Non protein (prosthetic group) Red colour Iron containing tetrapyrrole porphyrin derivative 4% of the total Hb mass Reversibly binds Oxygen Structure of Heme An Iron –porphyrin (Protoporphrin IX) compound with tetrapyrrole structure Protoporphyrin IX consists of 4 pyrrole rings combined through — CH= bridges (methyne bridges) The methyne bridges are referred as α,β,γ, and δ. The 2 Hydrogen atoms in the –NH groups pyrrole rings (II & IV) are replaced by Ferrous( Fe++) . The four pyrrole rings present in the porphyrin molecule are designated as I,II,III & IV . Each of these four rings has 2 groups attached to them M = Methyl –CH3 V = Vinyl – CH=CH2 P = Propionyl - CH2 - CH2 - COOH . The Fe++ can form 2 additional bonds .One of these position is linked internally (5th linkage ) to nitrogen of imidazole ring of Histidine of the Globin polypeptide chains . Other position is available to bind Oxygen Heme is the most prevalent metalloporphyrin in humans Common prosthetic group in Hemoglobin — Transport of O2 in blood Myoglobin — Storage of O2 in muscles Cytochromes — Part of electron transport chain Catalase — Degradation of H2O2 Tryptophan pyrolase — Oxidation of Tryptophan Cytochrome P450 — Hydroxylation of Xenobiotics HEME SYNTHESIS Major sites Liver Erythrocyte producing cells of bone marrow Rate of heme synthesis in liver is highly variable & depends upon size of heme pool while it is relatively constant in in bone marrow is relatively constant Mature RBC lack mitochondria and are unable to synthesize heme.
    [Show full text]
  • Isolation of Organic Selenium Compounds from Antarctic Krill After Enzymatic Hydrolysis and Bifunctional Chromatography
    Isolation of Organic Selenium Compounds from Antarctic Krill after Enzymatic Hydrolysis and Bifunctional Chromatography Von der Fakultät Maschinenbau der Helmut-Schmidt-Universität / Universität der Bundeswehr Hamburg zur Erlangung des akademischen Grades einer Doktor-Ingenieurin genehmigte DISSERTATION vorgelegt von M. Sc. Mariana Siwek aus Bukarest Hamburg 2007 Gutachter: Prof. Dr.-Ing. Bernd Niemeyer Helmut-Schmidt-Universität / Universität der Bundeswehr Hamburg Prof. Dr. Volker Kasche Technische Universität Hamburg-Harburg Tag der Disputation: 07. Dezember 2007 Acknowledgement My sincere thanks to Prof. Bernd Niemeyer and Prof. Volker Kasche for giving me this great opportunity to perform my PhD thesis at the Department of Biotechnology II (now Institute of Technical Biocatalysis) of the Hamburg University of Technology and for offering me during this time their helpful support and guidance. I acknowledge with thanks and deepest appreciation Dr. Boris Galunsky for his precious scientific guidance and for his invaluable advice over these years. I would also like to thank my colleagues from my department and also Dr. Jan Bergmann and his colleagues from the GKSS Institute of Coastal Research in Geesthacht for their help, advice and experience. And last but not least, many thanks go to my family and my friends who always supported and believed in me. Their constant encouragement and understanding motivated me and essentially contributed to the accomplishment of this work. I II TABLE OF CONTENTS 1. INTRODUCTION...............................................................................................
    [Show full text]
  • Explorative Application of Selenium Catalysts in the Oxidation of Benzyl Alcohol
    Explorative application of selenium catalysts in the oxidation of benzyl alcohol. Hanane Achibat,b Luca Sancineto,a Martina Palomba,a Laura Abenante,a Maria Teresa Sarro,a Mostafa Khouilib and Claudio Santi*a a Group of Catalysis and Organic Green Chemistry, Department of Pharmaceutical Sciences, University of Perugia, Via del Liceo 1, Perugia 06100, Italy – [email protected] b Laboratoire de Chimie Organique & Analytique, Université Sultan Moulay Slimane, Faculté des Sciences et Techniques, BP 523, 23000 Béni-Mellal (Morocco) Abstract: Oxidation mediated by hydrogen peroxide needs to be accelerate by approrpiate catalyst in order to be completed in a reasonable reaction time. As a part of our investigation in the use of organoselenium cataysts in bio-mimetic oxidative protocol we reported here some preliminary results on the oxidation of benzyl alcohol into the corresponding benzoic acid. Keywords: alcohol; oxidation; selenium; catalysis; carboxylic acids; hydrogen peroxide; green chemistry During the last years, some of us introduced the term “Bio-Logic-catalysis” to indicate the bioinspired use of organoselenium catalysts in some oxidation reactions (Fig. 1). These were effected using hydrogen peroxide as reactive species of oxygen, water as medium and seleninic acid as the catalyst involved in a mechanism that has been demonstrated to be very similar to that of the naturally occurring enzyme glutathione peroxidase.1 Following this protocol, the direct 1,2 dihydroxylation of olefins was carried out in appreciable yield and with a significant chemo and stereocontrol.2 Similarly, the oxidation of aldehydes to the corresponding carboxylic acids or esters can be easily achieved under mild conditions, which is normally associated to a high level of atom economy.3 1 C.
    [Show full text]