Can Plant Viruses Cross the Kingdom Border and Be Pathogenic to Humans?
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Grapevine Virus Diseases: Economic Impact and Current Advances in Viral Prospection and Management1
1/22 ISSN 0100-2945 http://dx.doi.org/10.1590/0100-29452017411 GRAPEVINE VIRUS DISEASES: ECONOMIC IMPACT AND CURRENT ADVANCES IN VIRAL PROSPECTION AND MANAGEMENT1 MARCOS FERNANDO BASSO2, THOR VINÍCIUS MArtins FAJARDO3, PASQUALE SALDARELLI4 ABSTRACT-Grapevine (Vitis spp.) is a major vegetative propagated fruit crop with high socioeconomic importance worldwide. It is susceptible to several graft-transmitted agents that cause several diseases and substantial crop losses, reducing fruit quality and plant vigor, and shorten the longevity of vines. The vegetative propagation and frequent exchanges of propagative material among countries contribute to spread these pathogens, favoring the emergence of complex diseases. Its perennial life cycle further accelerates the mixing and introduction of several viral agents into a single plant. Currently, approximately 65 viruses belonging to different families have been reported infecting grapevines, but not all cause economically relevant diseases. The grapevine leafroll, rugose wood complex, leaf degeneration and fleck diseases are the four main disorders having worldwide economic importance. In addition, new viral species and strains have been identified and associated with economically important constraints to grape production. In Brazilian vineyards, eighteen viruses, three viroids and two virus-like diseases had already their occurrence reported and were molecularly characterized. Here, we review the current knowledge of these viruses, report advances in their diagnosis and prospection of new species, and give indications about the management of the associated grapevine diseases. Index terms: Vegetative propagation, plant viruses, crop losses, berry quality, next-generation sequencing. VIROSES EM VIDEIRAS: IMPACTO ECONÔMICO E RECENTES AVANÇOS NA PROSPECÇÃO DE VÍRUS E MANEJO DAS DOENÇAS DE ORIGEM VIRAL RESUMO-A videira (Vitis spp.) é propagada vegetativamente e considerada uma das principais culturas frutíferas por sua importância socioeconômica mundial. -
Evidence for Viral Infection in the Copepods Labidocera Aestiva And
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School January 2012 Evidence for Viral Infection in the Copepods Labidocera aestiva and Acartia tonsa in Tampa Bay, Florida Darren Stephenson Dunlap University of South Florida, [email protected] Follow this and additional works at: http://scholarcommons.usf.edu/etd Part of the American Studies Commons, Other Oceanography and Atmospheric Sciences and Meteorology Commons, and the Virology Commons Scholar Commons Citation Dunlap, Darren Stephenson, "Evidence for Viral Infection in the Copepods Labidocera aestiva and Acartia tonsa in Tampa Bay, Florida" (2012). Graduate Theses and Dissertations. http://scholarcommons.usf.edu/etd/4032 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Evidence of Viruses in the Copepods Labidocera aestiva and Acartia tonsa in Tampa Bay, Florida By Darren S. Dunlap A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science College of Marine Science University of South Florida Major Professor: Mya Breitbart, Ph.D Kendra Daly, Ph.D Ian Hewson, Ph.D Date of Approval: March 19, 2012 Key Words: Copepods, Single-stranded DNA Viruses, Mesozooplankton, Transmission Electron Microscopy, Metagenomics Copyright © 2012, Darren Stephenson Dunlap DEDICATION None of this would have been possible without the generous love and support of my entire family over the years. My parents, Steve and Jill Dunlap, have always encouraged my pursuits with support and love, and their persistence of throwing me into lakes and rivers is largely responsible for my passion for Marine Science. -
UC Riverside UC Riverside Previously Published Works
UC Riverside UC Riverside Previously Published Works Title Viral RNAs are unusually compact. Permalink https://escholarship.org/uc/item/6b40r0rp Journal PloS one, 9(9) ISSN 1932-6203 Authors Gopal, Ajaykumar Egecioglu, Defne E Yoffe, Aron M et al. Publication Date 2014 DOI 10.1371/journal.pone.0105875 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Viral RNAs Are Unusually Compact Ajaykumar Gopal1, Defne E. Egecioglu1, Aron M. Yoffe1, Avinoam Ben-Shaul2, Ayala L. N. Rao3, Charles M. Knobler1, William M. Gelbart1* 1 Department of Chemistry & Biochemistry, University of California Los Angeles, Los Angeles, California, United States of America, 2 Institute of Chemistry & The Fritz Haber Research Center, The Hebrew University of Jerusalem, Givat Ram, Jerusalem, Israel, 3 Department of Plant Pathology, University of California Riverside, Riverside, California, United States of America Abstract A majority of viruses are composed of long single-stranded genomic RNA molecules encapsulated by protein shells with diameters of just a few tens of nanometers. We examine the extent to which these viral RNAs have evolved to be physically compact molecules to facilitate encapsulation. Measurements of equal-length viral, non-viral, coding and non-coding RNAs show viral RNAs to have among the smallest sizes in solution, i.e., the highest gel-electrophoretic mobilities and the smallest hydrodynamic radii. Using graph-theoretical analyses we demonstrate that their sizes correlate with the compactness of branching patterns in predicted secondary structure ensembles. The density of branching is determined by the number and relative positions of 3-helix junctions, and is highly sensitive to the presence of rare higher-order junctions with 4 or more helices. -
Guide for Common Viral Diseases of Animals in Louisiana
Sampling and Testing Guide for Common Viral Diseases of Animals in Louisiana Please click on the species of interest: Cattle Deer and Small Ruminants The Louisiana Animal Swine Disease Diagnostic Horses Laboratory Dogs A service unit of the LSU School of Veterinary Medicine Adapted from Murphy, F.A., et al, Veterinary Virology, 3rd ed. Cats Academic Press, 1999. Compiled by Rob Poston Multi-species: Rabiesvirus DCN LADDL Guide for Common Viral Diseases v. B2 1 Cattle Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 2 Deer and Small Ruminants Please click on the principle system involvement Generalized viral disease Respiratory viral disease Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 3 Swine Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 4 Horses Please click on the principle system involvement Generalized viral diseases Neurological viral diseases Respiratory viral diseases Enteric viral diseases Abortifacient/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 5 Dogs Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. -
Virus Particle Structures
Virus Particle Structures Virus Particle Structures Palmenberg, A.C. and Sgro, J.-Y. COLOR PLATE LEGENDS These color plates depict the relative sizes and comparative virion structures of multiple types of viruses. The renderings are based on data from published atomic coordinates as determined by X-ray crystallography. The international online repository for 3D coordinates is the Protein Databank (www.rcsb.org/pdb/), maintained by the Research Collaboratory for Structural Bioinformatics (RCSB). The VIPER web site (mmtsb.scripps.edu/viper), maintains a parallel collection of PDB coordinates for icosahedral viruses and additionally offers a version of each data file permuted into the same relative 3D orientation (Reddy, V., Natarajan, P., Okerberg, B., Li, K., Damodaran, K., Morton, R., Brooks, C. and Johnson, J. (2001). J. Virol., 75, 11943-11947). VIPER also contains an excellent repository of instructional materials pertaining to icosahedral symmetry and viral structures. All images presented here, except for the filamentous viruses, used the standard VIPER orientation along the icosahedral 2-fold axis. With the exception of Plate 3 as described below, these images were generated from their atomic coordinates using a novel radial depth-cue colorization technique and the program Rasmol (Sayle, R.A., Milner-White, E.J. (1995). RASMOL: biomolecular graphics for all. Trends Biochem Sci., 20, 374-376). First, the Temperature Factor column for every atom in a PDB coordinate file was edited to record a measure of the radial distance from the virion center. The files were rendered using the Rasmol spacefill menu, with specular and shadow options according to the Van de Waals radius of each atom. -
Beet Necrotic Yellow Vein Virus (Benyvirus)
EuropeanBlackwell Publishing Ltd and Mediterranean Plant Protection Organization PM 7/30 (2) Organisation Européenne et Méditerranéenne pour la Protection des Plantes Diagnostics1 Diagnostic Beet necrotic yellow vein virus (benyvirus) Specific scope Specific approval and amendment This standard describes a diagnostic protocol for Beet necrotic This Standard was developed under the EU DIAGPRO Project yellow vein virus (benyvirus). (SMT 4-CT98-2252) through a partnership of contractor laboratories and intercomparison laboratories in European countries. Approved as an EPPO Standard in 2003-09. Revision approved in 2006-09. Introduction Identity Rhizomania disease of sugar beet was first reported in Italy Name: Beet necrotic yellow vein virus (Canova, 1959) and has since been reported in more than Acronym: BNYVV 25 countries. The disease causes economic loss to sugar beet Taxonomic position: Viruses, Benyvirus (Beta vulgaris var. saccharifera) by reducing yield. Rhizomania EPPO computer code: BNYVV0 is caused by Beet necrotic yellow vein virus (BNYVV), which Phytosanitary categorization: EPPO A2 list no. 160; EU is transmitted by the soil protozoan, Polymyxa betae (family Annex designation I/B. Plasmodiophoraceae). The virus can survive in P. betae cystosori for more than 15 years. The symptoms of rhizomania, Detection also known as ‘root madness’, include root bearding, stunting, chlorosis of leaves, yellow veining and necrosis of leaf veins. The disease affects all subspecies of Beta vulgaris, including The virus is spread by movement of soil, primarily on machinery, sugar beet (Beta vulgaris subsp. maritime), fodder beet (Beta sugar beet roots, stecklings, other root crops, such as potato, vulgaris subsp. vulgaris), red beet (Beta vulgaris subsp. cicla), and in composts and soil. -
Diseases of Sugar Beet
Molecular Characterization of Beet Necrotic Yellow Vein Virus in Greece and Transgenic Approaches towards Enhancing Rhizomania Disease Resistance Ourania I. Pavli Thesis committee Thesis supervisor Prof.dr. J.M. Vlak Personal Chair at the Laboratory of Virology Wageningen University Prof.dr. G.N. Skaracis Head of Plant Breeding and Biometry Department of Crop Science Agricultural University of Athens, Greece Thesis co-supervisors Dr.ir. M. Prins Program Scientist KeyGene, Wageningen Prof.dr. N.J. Panopoulos Professor of Biotechnology and Applied Biology Department of Biology University of Crete, Greece Other members Prof.dr. R.G.F. Visser, Wageningen University Prof.dr.ir. L.C. van Loon, Utrecht University Dr.ir. R.A.A. van der Vlugt, Plant Research International, Wageningen Prof.dr. M. Varrelmann, Göttingen University, Germany This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. 2 Molecular Characterization of Beet Necrotic Yellow Vein Virus in Greece and Transgenic Approaches towards Enhancing Rhizomania Disease Resistance Ourania I. Pavli Thesis submitted in partial fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof.dr. M.J. Kropff in the presence of the Thesis Committee appointed by the Doctorate Board to be defended in public on Monday 11 January 2010 at 1.30 PM in the Aula 3 Pavli, O.I. Molecular characterization of beet necrotic yellow vein virus in Greece and transgenic approaches towards enhancing rhizomania -
Physicochemical Properties of Double-Stranded RNA Used to Discover a Reo-Like Virus from Blue Crab Callinectes Sapidus
Vol. 93: 17–29, 2010 DISEASES OF AQUATIC ORGANISMS Published December 7 doi: 10.3354/dao02280 Dis Aquat Org OPENPEN ACCESSCCESS Physicochemical properties of double-stranded RNA used to discover a reo-like virus from blue crab Callinectes sapidus Holly A. Bowers1, Gretchen A. Messick2, Ammar Hanif1, Rosemary Jagus1, Lee Carrion3, Oded Zmora4, Eric J. Schott1,* 1Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, Maryland 21202, USA 2Center for Coastal Environmental Health & Biomolecular Research at Charleston USDOC/NOAA/NOS/NCCOS, Oxford, Maryland 21654, USA 3Coveside Crabs, Inc., Dundalk, Maryland 21222, USA 4Institute of Marine and Environmental Technology, University of Maryland Baltimore County, Baltimore, Maryland 21202, USA ABSTRACT: Mortality among blue crab Callinectes sapidus in soft shell production facilities is typi- cally 25% or greater. The harvest, handling, and husbandry practices of soft shell crab production have the potential to spread or exacerbate infectious crab diseases. To investigate the possible role of viruses in soft shell crab mortalities, we took advantage of the physicochemical properties of double- stranded RNA (dsRNA) to isolate a putative virus genome. Further characterization confirmed the presence of a reo-like virus that possesses 12 dsRNA genome segments. The virus was present in >50% of dead or dying soft shell crabs, but fewer than 5% of healthy hard crabs. Injection of the virus caused mortality and resulted in the appearance of viral RNA and virus inclusions in hemocytes. The genome of the virus was partially sequenced and the information used to develop a reverse transcrip- tion polymerase chain reaction (RT-PCR) assay that is able to detect the virus genome in as little as 7.5 pg of total RNA. -
Rapid Identification of Known and New RNA Viruses from Animal Tissues
Rapid Identification of Known and New RNA Viruses from Animal Tissues Joseph G. Victoria1,2*, Amit Kapoor1,2, Kent Dupuis3, David P. Schnurr3, Eric L. Delwart1,2 1 Department of Molecular Virology, Blood Systems Research Institute, San Francisco, California, United States of America, 2 Department of Laboratory Medicine, University of California, San Francisco, California, United States of America, 3 Viral and Rickettsial Disease Laboratory, Division of Communicable Disease Control, California State Department of Public Health, Richmond, California, United States of America Abstract Viral surveillance programs or diagnostic labs occasionally obtain infectious samples that fail to be typed by available cell culture, serological, or nucleic acid tests. Five such samples, originating from insect pools, skunk brain, human feces and sewer effluent, collected between 1955 and 1980, resulted in pathology when inoculated into suckling mice. In this study, sequence-independent amplification of partially purified viral nucleic acids and small scale shotgun sequencing was used on mouse brain and muscle tissues. A single viral agent was identified in each sample. For each virus, between 16% to 57% of the viral genome was acquired by sequencing only 42–108 plasmid inserts. Viruses derived from human feces or sewer effluent belonged to the Picornaviridae family and showed between 80% to 91% amino acid identities to known picornaviruses. The complete polyprotein sequence of one virus showed strong similarity to a simian picornavirus sequence in the provisional Sapelovirus genus. Insects and skunk derived viral sequences exhibited amino acid identities ranging from 25% to 98% to the segmented genomes of viruses within the Reoviridae family. Two isolates were highly divergent: one is potentially a new species within the orthoreovirus genus, and the other is a new species within the orbivirus genus. -
Mgr. Marie Vilánková
www.novinky.cz www.rozhlas.cz VIRY Mgr. Marie Vilánková © ECC s.r.o. www.stefajir.cz Všechna práva vyhrazena Viry • Jejich zařazení do živé přírody • Virus jako informace • Jejich členění, • způsoby pronikání do lidského organismu, • nejčastější zdravotní problémy s nimi spojené • Možnosti řešení, včetně akutních infekcí, preparáty Joalis • Proč preparát Antivex je velmi důležitý © ECC s.r.o. Všechna práva vyhrazena Země • Životní prostředí – živé organismy - rostliny, živočichové… – tvořeny buňkami • Rostliny – počátek potravního řetězce, umí zachytávat sluneční energii a ukládat do chemických vazeb • Zvířata – zdroj potravy – rostliny nebo jiná zvířata • Houby a plísně – rozklad hmoty na základní prvky • Bakterie – také rozklad, velký význam v oběhu živin, prospěšné svazky s jinými organismy, mohou také škodit - Různé vztahy mezi organismy – boj o potravu, získání životního prostoru, přežití… © ECC s.r.o. Všechna práva vyhrazena Živé organismy • Živé organismy tvořeny buňkami – jednobuněčné (bakterie, prvoci, některé plísně), vícebuněčné • Buňka – tvořena ze specializovaných částí organel - cytoplasma, jádro, mitochondrie, endoplasmatické retikulum … • Buněčná membrána: dvojitá vrstva fosfolipidů s molekulami bílkovin – velmi důležité NENAsycené mastné kyseliny – VÝŽIVA!!! • Každá buňka – samostatný organismus – přijímá potravu, vylučuje, rozmnožuje se, reaguje na okolí, má nějakou fci -stavební produkuje stavební materiál (bílkoviny), transportní bariérová – přenáší částice přes bariéru, pohybová – natahuje a smršťuje se, signalizační © ECC s.r.o. Všechna práva vyhrazena Organismus = společnost buněk Soubor buněk = základní funkční jednotka • Propojeny pojivem – mezibuněčná hmota – produkt buněk vazivo, chrupavky, kosti, tekutiny • Tkáně: soubor buněk stejného typu (nervová, svalová, epitel...) • Orgány: skládají se z tkání, tvoří soustavy orgánů • Tělo: je složeno z buněk – 3,5 x 1013 buněk (lidí na Zemi 109) • Délka těla= 1,7 m, průměrná velikost buňky 10 - 20 mikrometru, měřítko 10-6 - člověk se dívá na svět z družice © ECC s.r.o. -
The Family Closteroviridae Revised
Virology Division News 2039 Arch Virol 147/10 (2002) VDNVirology Division News The family Closteroviridae revised G.P. Martelli (Chair)1, A. A. Agranovsky2, M. Bar-Joseph3, D. Boscia4, T. Candresse5, R. H. A. Coutts6, V. V. Dolja7, B. W. Falk8, D. Gonsalves9, W. Jelkmann10, A.V. Karasev11, A. Minafra12, S. Namba13, H. J. Vetten14, G. C. Wisler15, N. Yoshikawa16 (ICTV Study group on closteroviruses and allied viruses) 1 Dipartimento Protezione Piante, University of Bari, Italy; 2 Laboratory of Physico-Chemical Biology, Moscow State University, Moscow, Russia; 3 Volcani Agricultural Research Center, Bet Dagan, Israel; 4 Istituto Virologia Vegetale CNR, Sezione Bari, Italy; 5 Station de Pathologie Végétale, INRA,Villenave d’Ornon, France; 6 Imperial College, London, U.K.; 7 Department of Botany and Plant Pathology, Oregon State University, Corvallis, U.S.A.; 8 Department of Plant Pathology, University of California, Davis, U.S.A.; 9 Pacific Basin Agricultural Research Center, USDA, Hilo, Hawaii, U.S.A.; 10 Institut für Pflanzenschutz im Obstbau, Dossenheim, Germany; 11 Department of Microbiology and Immunology, Thomas Jefferson University, Doylestown, U.S.A.; 12 Istituto Virologia Vegetale CNR, Sezione Bari, Italy; 13 Graduate School of Agricultural and Life Sciences, University of Tokyo, Japan; 14 Biologische Bundesanstalt, Braunschweig, Germany; 15 Deparment of Plant Pathology, University of Florida, Gainesville, U.S.A.; 16 Iwate University, Morioka, Japan Summary. Recently obtained molecular and biological information has prompted the revision of the taxonomic structure of the family Closteroviridae. In particular, mealybug- transmitted species have been separated from the genus Closterovirus and accommodated in a new genus named Ampelovirus (from ampelos, Greek for grapevine). -
The Cucumber Leaf Spot Virus P25 Auxiliary Replicase Protein Binds and Modifies the Endoplasmic Reticulum Via N-Terminal Transmembrane Domains
Virology 468-470 (2014) 36–46 Contents lists available at ScienceDirect Virology journal homepage: www.elsevier.com/locate/yviro The Cucumber leaf spot virus p25 auxiliary replicase protein binds and modifies the endoplasmic reticulum via N-terminal transmembrane domains Kankana Ghoshal a, Jane Theilmann b, Ron Reade b, Helene Sanfacon b,D’Ann Rochon a,b,n a University of British Columbia, Faculty of Land and Food Systems, Vancouver, British Columbia, Canada V6T 1Z4 b Agriculture and Agri-Food Canada Pacific Agri-Food Research Centre, 4200 Hwy 97, Summerland, British Columbia, Canada V0H 1Z0 article info abstract Article history: Cucumber leaf spot virus (CLSV) is a member of the Aureusvirus genus, family Tombusviridae. The auxiliary Received 10 June 2014 replicase of Tombusvirids has been found to localize to endoplasmic reticulum (ER), peroxisomes or Returned to author for revisions mitochondria; however, localization of the auxiliary replicase of aureusviruses has not been determined. 28 June 2014 We have found that the auxiliary replicase of CLSV (p25) fused to GFP colocalizes with ER and that three Accepted 13 July 2014 predicted transmembrane domains (TMDs) at the N-terminus of p25 are sufficient for targeting, Available online 16 August 2014 although the second and third TMDs play the most prominent roles. Confocal analysis of CLSV infected Keywords: 16C plants shows that the ER becomes modified including the formation of punctae at connections Aureusvirus between ER tubules and in association with the nucleus. Ultrastructural analysis shows that the Auxiliary replicase cytoplasm contains numerous vesicles which are also found between the perinuclear ER and nuclear Endoplasmic reticulum membrane.