Hierarchical Colorings of Cographs
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A Fast and Scalable Graph Coloring Algorithm for Multi-Core and Many-Core Architectures
A Fast and Scalable Graph Coloring Algorithm for Multi-core and Many-core Architectures Georgios Rokos1, Gerard Gorman2, and Paul H J Kelly1 1 Software Peroformance Optimisation Group, Department of Computing 2 Applied Modelling and Computation Group, Department of Earth Science and Engineering Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom, fgeorgios.rokos09,g.gorman,[email protected] Abstract. Irregular computations on unstructured data are an impor- tant class of problems for parallel programming. Graph coloring is often an important preprocessing step, e.g. as a way to perform dependency analysis for safe parallel execution. The total run time of a coloring algo- rithm adds to the overall parallel overhead of the application whereas the number of colors used determines the amount of exposed parallelism. A fast and scalable coloring algorithm using as few colors as possible is vi- tal for the overall parallel performance and scalability of many irregular applications that depend upon runtime dependency analysis. C¸ataly¨ureket al. have proposed a graph coloring algorithm which relies on speculative, local assignment of colors. In this paper we present an improved version which runs even more optimistically with less thread synchronization and reduced number of conflicts compared to C¸ataly¨urek et al.'s algorithm. We show that the new technique scales better on multi- core and many-core systems and performs up to 1.5x faster than its pre- decessor on graphs with high-degree vertices, while keeping the number of colors at the same near-optimal levels. Keywords: Graph Coloring; Greedy Coloring; First-Fit Coloring; Ir- regular Data; Parallel Graph Algorithms; Shared-Memory Parallelism; Optimistic Execution; Many-core Architectures; Intel®Xeon Phi™ 1 Introduction Many modern applications are built around algorithms which operate on irreg- ular data structures, usually in form of graphs. -
I?'!'-Comparability Graphs
Discrete Mathematics 74 (1989) 173-200 173 North-Holland I?‘!‘-COMPARABILITYGRAPHS C.T. HOANG Department of Computer Science, Rutgers University, New Brunswick, NJ 08903, U.S.A. and B.A. REED Discrete Mathematics Group, Bell Communications Research, Morristown, NJ 07950, U.S.A. In 1981, Chv&tal defined the class of perfectly orderable graphs. This class of perfect graphs contains the comparability graphs. In this paper, we introduce a new class of perfectly orderable graphs, the &comparability graphs. This class generalizes comparability graphs in a natural way. We also prove a decomposition theorem which leads to a structural characteriza- tion of &comparability graphs. Using this characterization, we develop a polynomial-time recognition algorithm and polynomial-time algorithms for the clique and colouring problems for &comparability graphs. 1. Introduction A natural way to color the vertices of a graph is to put them in some order v*cv~<” l < v, and then assign colors in the following manner: (1) Consider the vertxes sequentially (in the sequence given by the order) (2) Assign to each Vi the smallest color (positive integer) not used on any neighbor vi of Vi with j c i. We shall call this the greedy coloring algorithm. An order < of a graph G is perfect if for each subgraph H of G, the greedy algorithm applied to H, gives an optimal coloring of H. An obstruction in a ordered graph (G, <) is a set of four vertices {a, b, c, d} with edges ab, bc, cd (and no other edge) and a c b, d CC. Clearly, if < is a perfect order on G, then (G, C) contains no obstruction (because the chromatic number of an obstruction is twu, but the greedy coloring algorithm uses three colors). -
CHROMATIC POLYNOMIALS of PLANE TRIANGULATIONS 1. Basic
1990, 2005 D. R. Woodall, School of Mathematical Sciences, University of Nottingham CHROMATIC POLYNOMIALS OF PLANE TRIANGULATIONS 1. Basic results. Throughout this survey, G will denote a multigraph with n vertices, m edges, c components and b blocks, and m′ will denote the smallest number of edges whose deletion from G leaves a simple graph. The corresponding numbers for Gi will be ′ denoted by ni , mi , ci , bi and mi . Let P(G, t) denote the number of different (proper vertex-) t-colourings of G. Anticipating a later result, we call P(G, t) the chromatic polynomial of G. It was introduced by G. D. Birkhoff (1912), who proved many of the following basic results. Proposition 1. (Examples.) Here Tn denotes an arbitrary tree with n vertices, Fn denotes an arbitrary forest with n vertices and c components, and Rn denotes the graph of an arbitrary triangulated polygon with n vertices: that is, a plane n-gon divided into triangles by n − 3 noncrossing chords. = n (a) P(Kn , t) t , = − n −1 (b) P(Tn , t) t(t 1) , = − − n −2 (c) P(Rn , t) t(t 1)(t 2) , = − − − + (d) P(Kn , t) t(t 1)(t 2)...(t n 1), = c − n −c (e) P(Fn , t) t (t 1) , = − n + − n − (f) P(Cn , t) (t 1) ( 1) (t 1) − = (−1)nt(t − 1)[1 + (1 − t) + (1 − t)2 + ... + (1 − t)n 2]. Proposition 2. (a) If the components of G are G1,..., Gc , then = P(G, t) P(G1, t)...P(Gc , t). = ∪ ∩ = (b) If G G1 G2 where G1 G2 Kr , then P(G1, t) P(G2, t) ¡¢¡¢¡¢¡¢¡¢¡¢¡¢¡¢¡£¡¢¡¢¡¢¡ P(G, t) = ¡ . -
Approximating the Chromatic Polynomial of a Graph
Approximating the Chromatic Polynomial Yvonne Kemper1 and Isabel Beichl1 Abstract Chromatic polynomials are important objects in graph theory and statistical physics, but as a result of computational difficulties, their study is limited to graphs that are small, highly structured, or very sparse. We have devised and implemented two algorithms that approximate the coefficients of the chromatic polynomial P (G, x), where P (G, k) is the number of proper k-colorings of a graph G for k ∈ N. Our algorithm is based on a method of Knuth that estimates the order of a search tree. We compare our results to the true chro- matic polynomial in several known cases, and compare our error with previous approximation algorithms. 1 Introduction The chromatic polynomial P (G, x) of a graph G has received much atten- tion as a result of the now-resolved four-color problem, but its relevance extends beyond combinatorics, and its domain beyond the natural num- bers. To start, the chromatic polynomial is related to the Tutte polynomial, and evaluating these polynomials at different points provides information about graph invariants and structure. In addition, P (G, x) is central in applications such as scheduling problems [26] and the q-state Potts model in statistical physics [10, 25]. The former occur in a variety of contexts, from algorithm design to factory procedures. For the latter, the relation- ship between P (G, x) and the Potts model connects statistical mechanics and graph theory, allowing researchers to study phenomena such as the behavior of ferromagnets. Unfortunately, computing P (G, x) for a general graph G is known to be #P -hard [16, 22] and deciding whether or not a graph is k-colorable is NP -hard [11]. -
Computing Tutte Polynomials
Computing Tutte Polynomials Gary Haggard1, David J. Pearce2, and Gordon Royle3 1 Bucknell University [email protected] 2 Computer Science Group, Victoria University of Wellington, [email protected] 3 School of Mathematics and Statistics, University of Western Australia [email protected] Abstract. The Tutte polynomial of a graph, also known as the partition function of the q-state Potts model, is a 2-variable polynomial graph in- variant of considerable importance in both combinatorics and statistical physics. It contains several other polynomial invariants, such as the chro- matic polynomial and flow polynomial as partial evaluations, and various numerical invariants such as the number of spanning trees as complete evaluations. However despite its ubiquity, there are no widely-available effective computational tools able to compute the Tutte polynomial of a general graph of reasonable size. In this paper we describe the implemen- tation of a program that exploits isomorphisms in the computation tree to extend the range of graphs for which it is feasible to compute their Tutte polynomials. We also consider edge-selection heuristics which give good performance in practice. We empirically demonstrate the utility of our program on random graphs. More evidence of its usefulness arises from our success in finding counterexamples to a conjecture of Welsh on the location of the real flow roots of a graph. 1 Introduction The Tutte polynomial of a graph is a 2-variable polynomial of significant im- portance in mathematics, statistical physics and biology [25]. In a strong sense it “contains” every graphical invariant that can be computed by deletion and contraction. -
Induced Minors and Well-Quasi-Ordering Jaroslaw Blasiok, Marcin Kamiński, Jean-Florent Raymond, Théophile Trunck
Induced minors and well-quasi-ordering Jaroslaw Blasiok, Marcin Kamiński, Jean-Florent Raymond, Théophile Trunck To cite this version: Jaroslaw Blasiok, Marcin Kamiński, Jean-Florent Raymond, Théophile Trunck. Induced minors and well-quasi-ordering. EuroComb: European Conference on Combinatorics, Graph Theory and Appli- cations, Aug 2015, Bergen, Norway. pp.197-201, 10.1016/j.endm.2015.06.029. lirmm-01349277 HAL Id: lirmm-01349277 https://hal-lirmm.ccsd.cnrs.fr/lirmm-01349277 Submitted on 27 Jul 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Available online at www.sciencedirect.com www.elsevier.com/locate/endm Induced minors and well-quasi-ordering Jaroslaw Blasiok 1,2 School of Engineering and Applied Sciences, Harvard University, United States Marcin Kami´nski 2 Institute of Computer Science, University of Warsaw, Poland Jean-Florent Raymond 2 Institute of Computer Science, University of Warsaw, Poland, and LIRMM, University of Montpellier, France Th´eophile Trunck 2 LIP, ENS´ de Lyon, France Abstract AgraphH is an induced minor of a graph G if it can be obtained from an induced subgraph of G by contracting edges. Otherwise, G is said to be H-induced minor- free. -
Arxiv:1907.08517V3 [Math.CO] 12 Mar 2021
RANDOM COGRAPHS: BROWNIAN GRAPHON LIMIT AND ASYMPTOTIC DEGREE DISTRIBUTION FRÉDÉRIQUE BASSINO, MATHILDE BOUVEL, VALENTIN FÉRAY, LUCAS GERIN, MICKAËL MAAZOUN, AND ADELINE PIERROT ABSTRACT. We consider uniform random cographs (either labeled or unlabeled) of large size. Our first main result is the convergence towards a Brownian limiting object in the space of graphons. We then show that the degree of a uniform random vertex in a uniform cograph is of order n, and converges after normalization to the Lebesgue measure on [0; 1]. We finally an- alyze the vertex connectivity (i.e. the minimal number of vertices whose removal disconnects the graph) of random connected cographs, and show that this statistics converges in distribution without renormalization. Unlike for the graphon limit and for the degree of a random vertex, the limiting distribution of the vertex connectivity is different in the labeled and unlabeled settings. Our proofs rely on the classical encoding of cographs via cotrees. We then use mainly combi- natorial arguments, including the symbolic method and singularity analysis. 1. INTRODUCTION 1.1. Motivation. Random graphs are arguably the most studied objects at the interface of com- binatorics and probability theory. One aspect of their study consists in analyzing a uniform random graph of large size n in a prescribed family, e.g. perfect graphs [MY19], planar graphs [Noy14], graphs embeddable in a surface of given genus [DKS17], graphs in subcritical classes [PSW16], hereditary classes [HJS18] or addable classes [MSW06, CP19]. The present paper focuses on uniform random cographs (both in the labeled and unlabeled settings). Cographs were introduced in the seventies by several authors independently, see e.g. -
Partitioning a Graph Into Disjoint Cliques and a Triangle-Free Graph
This is a repository copy of Partitioning a graph into disjoint cliques and a triangle-free graph. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/85292/ Version: Accepted Version Article: Abu-Khzam, FN, Feghali, C and Muller, H (2015) Partitioning a graph into disjoint cliques and a triangle-free graph. Discrete Applied Mathematics, 190-19. 1 - 12. ISSN 0166-218X https://doi.org/10.1016/j.dam.2015.03.015 © 2015, Elsevier. Licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International http://creativecommons.org/licenses/by-nc-nd/4.0/ Reuse Unless indicated otherwise, fulltext items are protected by copyright with all rights reserved. The copyright exception in section 29 of the Copyright, Designs and Patents Act 1988 allows the making of a single copy solely for the purpose of non-commercial research or private study within the limits of fair dealing. The publisher or other rights-holder may allow further reproduction and re-use of this version - refer to the White Rose Research Online record for this item. Where records identify the publisher as the copyright holder, users can verify any specific terms of use on the publisher’s website. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Partitioning a Graph into Disjoint Cliques and a Triangle-free Graph Faisal N. Abu-Khzam, Carl Feghali, Haiko M¨uller Abstract A graph G =(V, E) is partitionable if there exists a partition {A,B} of V such that A induces a disjoint union of cliques and B induces a triangle- free graph. -
Arxiv:1906.05510V2 [Math.AC]
BINOMIAL EDGE IDEALS OF COGRAPHS THOMAS KAHLE AND JONAS KRUSEMANN¨ Abstract. We determine the Castelnuovo–Mumford regularity of binomial edge ideals of complement reducible graphs (cographs). For cographs with n vertices the maximum regularity grows as 2n/3. We also bound the regularity by graph theoretic invariants and construct a family of counterexamples to a conjecture of Hibi and Matsuda. 1. Introduction Let G = ([n], E) be a simple undirected graph on the vertex set [n]= {1,...,n}. x1 ··· xn x1 ··· xn Let X = ( y1 ··· yn ) be a generic 2 × n matrix and S = k[ y1 ··· yn ] the polynomial ring whose indeterminates are the entries of X and with coefficients in a field k. The binomial edge ideal of G is JG = hxiyj −yixj : {i, j} ∈ Ei⊆ S, the ideal of 2×2 mi- nors indexed by the edges of the graph. Since their inception in [5, 15], connecting combinatorial properties of G with algebraic properties of JG or S/ JG has been a popular activity. Particular attention has been paid to the minimal free resolution of S/ JG as a standard N-graded S-module [3, 11]. The data of a minimal free res- olution is encoded in its graded Betti numbers βi,j (S/ JG) = dimk Tori(S/ JG, k)j . An interesting invariant is the highest degree appearing in the resolution, the Castelnuovo–Mumford regularity reg(S/ JG) = max{j − i : βij (S/ JG) 6= 0}. It is a complexity measure as low regularity implies favorable properties like vanish- ing of local cohomology. Binomial edge ideals have square-free initial ideals by arXiv:1906.05510v2 [math.AC] 10 Mar 2021 [5, Theorem 2.1] and, using [1], this implies that the extremal Betti numbers and regularity can also be derived from those initial ideals. -
The Chromatic Polynomial
Eotv¨ os¨ Lorand´ University Faculty of Science Master's Thesis The chromatic polynomial Author: Supervisor: Tam´asHubai L´aszl´oLov´aszPhD. MSc student in mathematics professor, Comp. Sci. Department [email protected] [email protected] 2009 Abstract After introducing the concept of the chromatic polynomial of a graph, we describe its basic properties and present a few examples. We continue with observing how the co- efficients and roots relate to the structure of the underlying graph, with emphasis on a theorem by Sokal bounding the complex roots based on the maximal degree. We also prove an improved version of this theorem. Finally we look at the Tutte polynomial, a generalization of the chromatic polynomial, and some of its applications. Acknowledgements I am very grateful to my supervisor, L´aszl´oLov´asz,for this interesting subject and his assistance whenever I needed. I would also like to say thanks to M´artonHorv´ath, who pointed out a number of mistakes in the first version of this thesis. Contents 0 Introduction 4 1 Preliminaries 5 1.1 Graph coloring . .5 1.2 The chromatic polynomial . .7 1.3 Deletion-contraction property . .7 1.4 Examples . .9 1.5 Constructions . 10 2 Algebraic properties 13 2.1 Coefficients . 13 2.2 Roots . 15 2.3 Substitutions . 18 3 Bounding complex roots 19 3.1 Motivation . 19 3.2 Preliminaries . 19 3.3 Proving the theorem . 20 4 Tutte's polynomial 23 4.1 Flow polynomial . 23 4.2 Reliability polynomial . 24 4.3 Statistical mechanics and the Potts model . 24 4.4 Jones polynomial of alternating knots . -
Computing Graph Polynomials on Graphs of Bounded Clique-Width
Computing Graph Polynomials on Graphs of Bounded Clique-Width J.A. Makowsky1, Udi Rotics2, Ilya Averbouch1, and Benny Godlin13 1 Department of Computer Science Technion{Israel Institute of Technology, Haifa, Israel [email protected] 2 School of Computer Science and Mathematics, Netanya Academic College, Netanya, Israel, [email protected] 3 IBM Research and Development Laboratory, Haifa, Israel Abstract. We discuss the complexity of computing various graph poly- nomials of graphs of fixed clique-width. We show that the chromatic polynomial, the matching polynomial and the two-variable interlace poly- nomial of a graph G of clique-width at most k with n vertices can be computed in time O(nf(k)), where f(k) ≤ 3 for the inerlace polynomial, f(k) ≤ 2k + 1 for the matching polynomial and f(k) ≤ 3 · 2k+2 for the chromatic polynomial. 1 Introduction In this paper1 we deal with the complexity of computing various graph poly- nomials of a simple graph of clique-width at most k. Our discussion focuses on the univariate characteristic polynomial P (G; λ), the matching polynomial m(G; λ), the chromatic polynomial χ(G; λ), the multivariate Tutte polyno- mial T (G; X; Y ) and the interlace polynomial q(G; XY ), cf. [Bol99], [GR01] and [ABS04b]. All these polynomials are not only of graph theoretic interest, but all of them have been motivated by or found applications to problems in chemistry, physics and biology. We give the necessary technical definitions in Section 3. Without restrictions on the graph, computing the characteristic polynomial is in P, whereas all the other polynomials are ]P hard to compute. -
P 4-Colorings and P 4-Bipartite Graphs Chinh T
P_4-Colorings and P_4-Bipartite Graphs Chinh T. Hoàng, van Bang Le To cite this version: Chinh T. Hoàng, van Bang Le. P_4-Colorings and P_4-Bipartite Graphs. Discrete Mathematics and Theoretical Computer Science, DMTCS, 2001, 4 (2), pp.109-122. hal-00958951 HAL Id: hal-00958951 https://hal.inria.fr/hal-00958951 Submitted on 13 Mar 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Discrete Mathematics and Theoretical Computer Science 4, 2001, 109–122 P4-Free Colorings and P4-Bipartite Graphs Ch´ınh T. Hoang` 1† and Van Bang Le2‡ 1Department of Physics and Computing, Wilfrid Laurier University, 75 University Ave. W., Waterloo, Ontario N2L 3C5, Canada 2Fachbereich Informatik, Universitat¨ Rostock, Albert-Einstein-Straße 21, D-18051 Rostock, Germany received May 19, 1999, revised November 25, 2000, accepted December 15, 2000. A vertex partition of a graph into disjoint subsets Vis is said to be a P4-free coloring if each color class Vi induces a subgraph without a chordless path on four vertices (denoted by P4). Examples of P4-free 2-colorable graphs (also called P4-bipartite graphs) include parity graphs and graphs with “few” P4s like P4-reducible and P4-sparse graphs.