The Contribution of Gene Mutations to the Pathogenesis of Tetralogy of Fallot
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Fog2 Is Critical for Cardiac Function and Maintenance of Coronary Vasculature in the Adult Mouse Heart
Fog2 is critical for cardiac function and maintenance of coronary vasculature in the adult mouse heart Bin Zhou, … , Sergei G. Tevosian, William T. Pu J Clin Invest. 2009;119(6):1462-1476. https://doi.org/10.1172/JCI38723. Research Article Cardiology Aberrant transcriptional regulation contributes to the pathogenesis of both congenital and adult forms of heart disease. While the transcriptional regulator friend of Gata 2 (FOG2) is known to be essential for heart morphogenesis and coronary development, its tissue-specific function has not been previously investigated. Additionally, little is known about the role of FOG2 in the adult heart. Here we used spatiotemporally regulated inactivation of Fog2 to delineate its function in both the embryonic and adult mouse heart. Early cardiomyocyte-restricted loss of Fog2 recapitulated the cardiac and coronary defects of the Fog2 germline murine knockouts. Later cardiomyocyte-restricted loss ofF og2 (Fog2MC) did not result in defects in cardiac structure or coronary vessel formation. However, Fog2MC adult mice had severely depressed ventricular function and died at 8–14 weeks. Fog2MC adult hearts displayed a paucity of coronary vessels, associated with myocardial hypoxia, increased cardiomyocyte apoptosis, and cardiac fibrosis. Induced inactivation of Fog2 in the adult mouse heart resulted in similar phenotypes, as did ablation of the FOG2 interaction with the transcription factor GATA4. Loss of the FOG2 or FOG2-GATA4 interaction altered the expression of a panel of angiogenesis-related genes. Collectively, our data indicate that FOG2 regulates adult heart function and coronary angiogenesis. Find the latest version: https://jci.me/38723/pdf Research article Fog2 is critical for cardiac function and maintenance of coronary vasculature in the adult mouse heart Bin Zhou,1,2 Qing Ma,1 Sek Won Kong,1 Yongwu Hu,1,3 Patrick H. -
Functional Characterization of Alternative Splice Variants of The
Functional characterization of alternative splice variants of the Drosophila GATA transcription factor serpent containing either one or two zinc finger domains Douaa Moussalem To cite this version: Douaa Moussalem. Functional characterization of alternative splice variants of the Drosophila GATA transcription factor serpent containing either one or two zinc finger domains. Genetics. Université Paul Sabatier - Toulouse III, 2020. English. NNT : 2020TOU30138. tel-03162582 HAL Id: tel-03162582 https://tel.archives-ouvertes.fr/tel-03162582 Submitted on 8 Mar 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE En vue de l’obtention du DOCTORAT DE L’UNIVERSITÉ DE TOULOUSE Délivré par l'Université Toulouse 3 - Paul Sabatier Présentée et soutenue par Douaa MOUSSALEM Le 12 octobre 2020 Titre : Functional characterization of alternative splice variants of the Drosophila GATA transcription factor Serpent containing either one or two zinc finger domains. Ecole doctorale : BSB - Biologie, Santé, Biotechnologies Spécialité : GENETIQUE MOLECULAIRE Unité de recherche : CBD - Centre de Biologie du Développement Thèse dirigée par Marc HAENLIN et Dani OSMAN Jury M. David CRIBBS, Président Mme Annarita MICCIO, Rapporteure Mme Kyra CAMPBELL, Rapporteure M. Samir MERABET, Rapporteur M. Marc HAENLIN, Directeur de thèse M. -
Tinman Function Is Essential for Vertebrate Heart Development: Elimination of Cardiac Differentiation by Dominant Inhibitory
DEVELOPMENTAL BIOLOGY 204, 187–196 (1998) ARTICLE NO. DB989080 CORE Metadata, citation and similar papers at core.ac.uk Provided by ElsevierTinman - Publisher Connector Function Is Essential for Vertebrate Heart Development: Elimination of Cardiac Differentiation by Dominant Inhibitory Mutants of the tinman- Related Genes, XNkx2-3 and XNkx2-5 Matthew W. Grow and Paul A. Krieg Institute for Cellular and Molecular Biology and Department of Zoology, University of Texas at Austin, Austin, Texas 78712 In Drosophila, the tinman gene is absolutely required for development of the dorsal vessel, the insect equivalent of the heart. In vertebrates, the tinman gene is represented by a small family of tinman-related sequences, some of which are expressed during embryonic heart development. At present however, the precise importance of this gene family for vertebrate heart development is unclear. Using the Xenopus embryo, we have employed a dominant inhibitory strategy to interfere with the function of the endogenous tinman-related genes. In these experiments, suppression of tinman gene function can result in the complete elimination of myocardial gene expression and the absence of cell movements associated with embryonic heart development. This inhibition can be rescued by expression of wild-type tinman sequences. These experiments indicate that function of tinman family genes is essential for development of the vertebrate heart. © 1998 Academic Press Key Words: cardiac development; homeobox; homeodomain; NK2; tinman; Xenopus. INTRODUCTION 1996). In humans, mutations in the Nkx2-5 homolog are known to be responsible for a certain class of congenital In Drosophila, the homeobox gene tinman is required for heart defects (Schott et al., 1998). -
The Genetic Factors of Bilaterian Evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen a Panfilio2,3, Thomas Wiehe1
RESEARCH ARTICLE The genetic factors of bilaterian evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen A Panfilio2,3, Thomas Wiehe1 1Institute for Genetics, Cologne Biocenter, University of Cologne, Cologne, Germany; 2Institute for Zoology: Developmental Biology, Cologne Biocenter, University of Cologne, Cologne, Germany; 3School of Life Sciences, University of Warwick, Gibbet Hill Campus, Coventry, United Kingdom Abstract The Cambrian explosion was a unique animal radiation ~540 million years ago that produced the full range of body plans across bilaterians. The genetic mechanisms underlying these events are unknown, leaving a fundamental question in evolutionary biology unanswered. Using large-scale comparative genomics and advanced orthology evaluation techniques, we identified 157 bilaterian-specific genes. They include the entire Nodal pathway, a key regulator of mesoderm development and left-right axis specification; components for nervous system development, including a suite of G-protein-coupled receptors that control physiology and behaviour, the Robo- Slit midline repulsion system, and the neurotrophin signalling system; a high number of zinc finger transcription factors; and novel factors that previously escaped attention. Contradicting the current view, our study reveals that genes with bilaterian origin are robustly associated with key features in extant bilaterians, suggesting a causal relationship. *For correspondence: [email protected] Introduction The taxon Bilateria consists of multicellular animals -
Variants of STAR, AMH and ZFPM2 /FOG2 May Contribute Towards the Broad Phenotype Observed in 46,XY DSD Patients with Heterozygou
International Journal of Molecular Sciences Article Variants of STAR, AMH and ZFPM2/FOG2 May Contribute towards the Broad Phenotype Observed in 46,XY DSD Patients with Heterozygous Variants of NR5A1 Idoia Martínez de LaPiscina 1 , Rana AA Mahmoud 2 , Kay-Sara Sauter 3 , Isabel Esteva 4, Milagros Alonso 5, Ines Costa 6, Jose Manuel Rial-Rodriguez 7, Amaia Rodríguez-Estévez 1,8, Amaia Vela 1,8, Luis Castano 1,8 and Christa E. Flück 3,* 1 Biocruces Bizkaia Health Research Institute, Cruces University Hospital, UPV/EHU, CIBERER, CIBERDEM, ENDO-ERN. Plaza de Cruces 12, 48903 Barakaldo, Spain; [email protected] (I.M.d.L.); [email protected] (A.R.-E.); [email protected] (A.V.); [email protected] (L.C.) 2 Department of Pediatrics, Endocrinology Section, Ain Shams University, 38 Abbasia, Nour Mosque, El-Mohamady, Al Waili, Cairo 11591, Egypt; [email protected] 3 Pediatric Endocrinology, Diabetology and Metabolism, Department of Pediatrics, Department of BioMedical Research, Inselspital, Bern University Hospital, University of Bern, Freiburgstrasse 15, 3010 Bern, Switzerland; [email protected] 4 Endocrinology Section, Gender Identity Unit, Regional University Hospital of Malaga, Av. de Carlos Haya, s/n, 29010 Málaga, Spain; [email protected] 5 Pediatric Endocrinology Department, Ramon y Cajal University Hospital, Ctra. de Colmenar Viejo km. 9, 100, 28034 Madrid, Spain; [email protected] 6 Pediatric Department, Manises -
GATA Transcription Factors and Their Co-Regulators Guide the Development Of
GATA transcription factors and their co-regulators guide the development of GABAergic and serotonergic neurons in the anterior brainstem Laura Tikker Molecular and Integrative Biosciences Research Programme Faculty of Biological and Environmental Sciences Doctoral Programme Integrative Life Science University of Helsinki ACADEMIC DISSERTATION Doctoral thesis, to be presented for public examination, with the permission of the Faculty of Biological and Environmental Sciences of the University of Helsinki, in Raisio Hall (LS B2) in Forest Sciences building, Latokartanonkaari 7, Helsinki, on the 3rd of April, 2020 at 12 noon. Supervisor Professor Juha Partanen University of Helsinki (Finland) Thesis Committee members Docent Mikko Airavaara University of Helsinki (Finland) Professor Timo Otonkoski University of Helsinki (Finland) Pre-examinators Docent Satu Kuure University of Helsinki (Finland) Research Scientist Siew-Lan Ang, PhD The Francis Crick Institute (United Kingdom) Opponent Research Scientist Johan Holmberg, PhD Karolinska Institutet (Sweden) Custos Professor Juha Partanen University of Helsinki (Finland) The Faculty of Biological and Environmental Sciences, University of Helsinki, uses the Urkund system for plagiarism recognition to examine all doctoral dissertations. ISBN: 978-951-51-5930-4 (paperback) ISBN: 978-951-51-5931-1 (PDF) ISSN: 2342-3161 (paperback) ISSN: 2342-317X (PDF) Printing house: Painosalama Oy Printing location: Turku, Finland Printed on: 03.2020 Cover artwork: Serotonergic neurons in adult dorsal raphe (mouse). -
Bioinformatics Analyses and Biological Function of Lncrna ZFPM2‑AS1 and ZFPM2 Gene in Hepatocellular Carcinoma
ONCOLOGY LETTERS 19: 3677-3686, 2020 Bioinformatics analyses and biological function of lncRNA ZFPM2‑AS1 and ZFPM2 gene in hepatocellular carcinoma YI LUO1*, XIAOJUN WANG2*, LING MA3*, ZHIHUA MA4, SHEN LI5, XIAOYU FANG6 and XIANGYU MA1 1Department of Epidemiology, College of Preventive Medicine, Army Military Medical University; 2Department of Hepatobiliary Surgery, The First Affiliated Hospital of Army Military Medical University, Chongqing 400038; 3Department of Pediatrics, Banan People's Hospital of Chongqing, Chongqing 401320; 4Department of Anesthesia, The First Affiliated Hospital of Army Military Medical University, Chongqing 400038; 5The Second Clinical College, Chongqing Medical University, Chongqing 400010; 6College of Preventive Medicine, Southwest Medical University, Luzhou, Sichuan 646000, P.R. China Received August 6, 2019; Accepted November 14, 2020 DOI: 10.3892/ol.2020.11485 Abstract. Hepatocellular carcinoma (HCC) remains one of the demonstrated that lncRNA ZFPM2-AS1 and the ZFPM2 gene most lethal malignant tumors worldwide; however, the etiology may contribute to the occurrence and prognosis of HCC. These of HCC still remains poorly understood. In the present study, findings may provide a novel understanding of the molecular cancer-omics databases, including The Cancer Genome Atlas, mechanisms underlying the occurrence and prognosis of HCC. GTEx and Gene Expression Omnibus, were systematically analyzed in order to investigate the role of the long non-coding Introduction RNA (lncRNA) zinc finger protein, FOG family member 2-antisense 1 (ZFPM2-AS1) and the zinc finger protein, Hepatocellular carcinoma (HCC) is one of the most lethal FOG family member 2 (ZFPM2) gene in the occurrence malignant tumors worldwide, with an incidence rate of and progression of HCC. -
Functional Homology and Homology of Function
To appear in Biology and Philosophy 22(5) © Springer Functional Homology and Homology of Function: † Biological Concepts and Philosophical Consequences Alan C. Love Department of Philosophy University of Minnesota 831 Heller Hall 271 19th Ave. S Minneapolis, MN 55455 Tel: 1-612-625-4510 Fax: 1-612-626-8380 [email protected] Key Words: activity, developmental biology, epistemology, function, homology, structural biology *One Figure † This paper benefited greatly from the feedback of participants at the 2006 Philosophy and Developmental Biology Workshop in Vancouver and those attending the ‘The Importance of Homology for Biology and Philosophy’ session at the 2007 ISHPSSB in Exeter. Ingo Brigandt, Marc Ereshefsky, Paul Griffiths, Mohan Matthen, and Karola Stotz provided helpful suggestions on many aspects of an earlier version of the paper. I am also grateful to Marc Ereshefsky for organizing these symposia on homology, which spurred me to work on this material. 1 Abstract “Functional homology” appears regularly in different areas of biological research and yet it is apparently a contradiction in terms—homology concerns identity of structure regardless of form and function. I argue that despite this conceptual tension there is a legitimate conception of ‘homology of function’, which can be recovered by utilizing a distinction from pre-Darwinian physiology (use versus activity) to identify an appropriate meaning of ‘function’. This account is directly applicable to molecular developmental biology and shares a connection to the theme of hierarchy in homology. I situate ‘homology of function’ within existing definitions and criteria for structural assessments of homology, and introduce a criterion of ‘organization’ for judging function homologues, which focuses on hierarchically interconnected interdependencies (similar to relative position and connection for skeletal elements in structural homology). -
Blueprint Genetics Congenital Structural Heart Disease Panel
Congenital Structural Heart Disease Panel Test code: CA1501 Is a 114 gene panel that includes assessment of non-coding variants. Is ideal for patients with congenital heart disease, particularly those with features of hereditary disorders. Is not ideal for patients suspected to have a ciliopathy or a rasopathy. For those patients, please consider our Primary Ciliary Dyskinesia Panel and our Noonan Syndrome Panel, respectively. About Congenital Structural Heart Disease There are many types of congenital heart disease (CHD) ranging from simple asymptomatic defects to complex defects with severe, life-threatening symptoms. CHDs are the most common type of birth defect and affect at least 8 out of every 1,000 newborns. Annually, more than 35,000 babies in the United States are born with CHDs. Many of these CHDs are simple conditions and need no treatment or are easily repaired. Some babies are born with complex CHD requiring special medical care. The diagnosis and treatment of complex CHDs has greatly improved over the past few decades. As a result, almost all children who have complex heart defects survive to adulthood and can live active, productive lives. However, many patients who have complex CHDs continue to need special heart care throughout their lives. In the United States, more than 1 million adults are living with congenital heart disease. Availability 4 weeks Gene Set Description Genes in the Congenital Structural Heart Disease Panel and their clinical significance Gene Associated phenotypes Inheritance ClinVar HGMD ABL1 Congenital -
A Systematic Analysis of Tinman Function Reveals Eya and JAK-STAT Signaling As Essential Regulators of Muscle Development
Developmental Cell Article A Systematic Analysis of Tinman Function Reveals Eya and JAK-STAT Signaling as Essential Regulators of Muscle Development Ya-Hsin Liu,1 Janus S. Jakobsen,1 Guillaume Valentin,1 Ioannis Amarantos,1,2 Darren T. Gilmour,1 and Eileen E.M. Furlong1,* 1European Molecular Biology Laboratory, D-69117 Heidelberg, Germany 2Present address: Febit Biomed, Neuenheimer Feld 519, D-69120 Heidelberg, Germany *Correspondence: [email protected] DOI 10.1016/j.devcel.2009.01.006 SUMMARY different family members (Fu et al., 1998), or compensatory roles of other TFs (Habets et al., 2003). Mutations in a single copy of Nk-2 proteins are essential developmental regulators the human Nkx2.5 gene results in congenital heart defects due from flies to humans. In Drosophila, the family to altered cardioblast gene expression (Schott et al., 1998). member tinman is the major regulator of cell fate Although there are obvious interspecies differences in the within the dorsal mesoderm, including heart, visceral, phenotypes of Nkx2.5 mutants, this factor clearly has a and dorsal somatic muscle. To decipher Tinman’s conserved role in regulating cardioblast gene expression. direct regulatory role, we performed a time course Due to the striking parallels between the functions of Nk-2 genes in heart development in flies and mice, the role of the of ChIP-on-chip experiments, revealing a more prom- Drosophila tinman gene has been most extensively studied in inent role in somatic muscle specification than pre- this context. Here, Tinman acts together with the GATA factor, viously anticipated. Through the combination of Pannier, and T-box factors (Doc and mid family members) to transgenic enhancer-reporter assays, colocalization regulate cardioblast specification (Gajewski et al., 2001; Reim studies, and phenotypic analyses, we uncovered and Frasch, 2005), while, later in development, Tinman regulates two additional factors within this myogenic network: cardioblast diversification and heart function (Zaffran et al., by activating eyes absent, Tinman’s regulatory 2006). -
The Human Gene Connectome As a Map of Short Cuts for Morbid Allele Discovery
The human gene connectome as a map of short cuts for morbid allele discovery Yuval Itana,1, Shen-Ying Zhanga,b, Guillaume Vogta,b, Avinash Abhyankara, Melina Hermana, Patrick Nitschkec, Dror Friedd, Lluis Quintana-Murcie, Laurent Abela,b, and Jean-Laurent Casanovaa,b,f aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065; bLaboratory of Human Genetics of Infectious Diseases, Necker Branch, Paris Descartes University, Institut National de la Santé et de la Recherche Médicale U980, Necker Medical School, 75015 Paris, France; cPlateforme Bioinformatique, Université Paris Descartes, 75116 Paris, France; dDepartment of Computer Science, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel; eUnit of Human Evolutionary Genetics, Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012, Institut Pasteur, F-75015 Paris, France; and fPediatric Immunology-Hematology Unit, Necker Hospital for Sick Children, 75015 Paris, France Edited* by Bruce Beutler, University of Texas Southwestern Medical Center, Dallas, TX, and approved February 15, 2013 (received for review October 19, 2012) High-throughput genomic data reveal thousands of gene variants to detect a single mutated gene, with the other polymorphic genes per patient, and it is often difficult to determine which of these being of less interest. This goes some way to explaining why, variants underlies disease in a given individual. However, at the despite the abundance of NGS data, the discovery of disease- population level, there may be some degree of phenotypic homo- causing alleles from such data remains somewhat limited. geneity, with alterations of specific physiological pathways under- We developed the human gene connectome (HGC) to over- come this problem. -
Single Allele Mutations at the Heart of Congenital Disease
Single allele mutations at the heart of congenital disease Nadia Rosenthal, Richard P. Harvey J Clin Invest. 1999;104(11):1483-1484. https://doi.org/10.1172/JCI8825. Commentary A prevailing dream among today’s developmental biologists is that the genes they discover controlling basic embryonic processes in animal models will eventually surface in mutant form as the cause of human genetic disorders. This hope has now been realized for the NKX2.5 gene, which encodes a member of the homeobox transcription factor family that is expressed in cardiac muscle during embryonic, fetal, and adult life (1). In the 7 years since it was first cloned from the mouse, Nkx2.5 has emerged as a key regulator of cardiac development in numerous vertebrate model systems, even those with the most primitive hearts (2, 3). In genetically engineered mice lacking both copies of the Nkx2.5 gene, heart development is arrested, and the heart remains a primitive linear tube, which fails to loop or to develop definitive chambers (1). The early lethality caused by mutation of Nkx2.5 in mice is not surprising, given that its homologue tinman is absolutely essential for formation of the muscular heartlike structure in the fruit fly Drosophila (1). The number of downstream cardiac regulatory genes shown to be dependent upon Nkx2.5 has placed this gene near the top of a genetic hierarchy responsible for heart development in vertebrates. The disruption of a gene in laboratory mice involves first producing heterozygous offspring that carry a single null allele. The apparently […] Find the latest version: https://jci.me/8825/pdf Single allele mutations at the heart Commentary of congenital disease See related article, pages 1567–1573.