Inactivation of the GATA Cofactor ZFPM1 Results in Abnormal
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Fog2 Is Critical for Cardiac Function and Maintenance of Coronary Vasculature in the Adult Mouse Heart
Fog2 is critical for cardiac function and maintenance of coronary vasculature in the adult mouse heart Bin Zhou, … , Sergei G. Tevosian, William T. Pu J Clin Invest. 2009;119(6):1462-1476. https://doi.org/10.1172/JCI38723. Research Article Cardiology Aberrant transcriptional regulation contributes to the pathogenesis of both congenital and adult forms of heart disease. While the transcriptional regulator friend of Gata 2 (FOG2) is known to be essential for heart morphogenesis and coronary development, its tissue-specific function has not been previously investigated. Additionally, little is known about the role of FOG2 in the adult heart. Here we used spatiotemporally regulated inactivation of Fog2 to delineate its function in both the embryonic and adult mouse heart. Early cardiomyocyte-restricted loss of Fog2 recapitulated the cardiac and coronary defects of the Fog2 germline murine knockouts. Later cardiomyocyte-restricted loss ofF og2 (Fog2MC) did not result in defects in cardiac structure or coronary vessel formation. However, Fog2MC adult mice had severely depressed ventricular function and died at 8–14 weeks. Fog2MC adult hearts displayed a paucity of coronary vessels, associated with myocardial hypoxia, increased cardiomyocyte apoptosis, and cardiac fibrosis. Induced inactivation of Fog2 in the adult mouse heart resulted in similar phenotypes, as did ablation of the FOG2 interaction with the transcription factor GATA4. Loss of the FOG2 or FOG2-GATA4 interaction altered the expression of a panel of angiogenesis-related genes. Collectively, our data indicate that FOG2 regulates adult heart function and coronary angiogenesis. Find the latest version: https://jci.me/38723/pdf Research article Fog2 is critical for cardiac function and maintenance of coronary vasculature in the adult mouse heart Bin Zhou,1,2 Qing Ma,1 Sek Won Kong,1 Yongwu Hu,1,3 Patrick H. -
Architecture of a Lymphomyeloid Developmental Switch Controlled by PU.1, Notch and Gata3 Marissa Morales Del Real and Ellen V
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Caltech Authors DEVELOPMENT AND STEM CELLS RESEARCH ARTICLE 1207 Development 140, 1207-1219 (2013) doi:10.1242/dev.088559 © 2013. Published by The Company of Biologists Ltd Architecture of a lymphomyeloid developmental switch controlled by PU.1, Notch and Gata3 Marissa Morales Del Real and Ellen V. Rothenberg* SUMMARY Hematopoiesis is a classic system with which to study developmental potentials and to investigate gene regulatory networks that control choices among alternate lineages. T-cell progenitors seeding the thymus retain several lineage potentials. The transcription factor PU.1 is involved in the decision to become a T cell or a myeloid cell, and the developmental outcome of expressing PU.1 is dependent on exposure to Notch signaling. PU.1-expressing T-cell progenitors without Notch signaling often adopt a myeloid program, whereas those exposed to Notch signals remain in a T-lineage pathway. Here, we show that Notch signaling does not alter PU.1 transcriptional activity by degradation/alteration of PU.1 protein. Instead, Notch signaling protects against the downregulation of T-cell factors so that a T-cell transcriptional network is maintained. Using an early T-cell line, we describe two branches of this network. The first involves inhibition of E-proteins by PU.1 and the resulting inhibition of Notch signaling target genes. Effects of E- protein inhibition can be reversed by exposure to Notch signaling. The second network is dependent on the ability of PU.1 to inhibit important T-cell transcription factor genes such as Myb, Tcf7 and Gata3 in the absence of Notch signaling. -
Supplementary Figure 1. Qrt-PCR Analyses for Measuring the Knockdown Efficiency of Transcription Factors. A549 and U937 Cells Kn
Supplementary Figure 1. qRT-PCR analyses for measuring the knockdown efficiency of transcription factors. A549 and U937 cells knocking down or overexpressing different transcription factors including NF-κB subunits p65 and p50 (A), HIF1 (B), TCF4 (C), AP-1 subunits c-Jun and c-FOS (D), or FOXP3 (E) were subjected to RNA isolation, followed by qRT-PCR analyses to examine the expression of these transcription factors. **P<0.01 and ***P<0.001. 1 Supplementary Figure 2. Effects of FOXP3 downregulation and overexpression on the expression of NLRP1, IL1B and IL18. A549 and U937 cells were transfected with si-FOXP3 or pCDNA3-2×Flag-FOXP3. After 24 h, cells were subjected to RNA isolation, followed by qRT-PCR analyses to examine the expression of NLRP1 (A), IL1B (B) and IL18 (C). ***P<0.001. 2 Supplementary Figure 3. Effects of CtBP2 downregulation and overexpression on the expression of miR-199a-3p, NLRP1, IL1B and IL18. A549 and U937 cells were transfected with si-CtBP2 or pCDNA3-2×Flag-CtBP2. After 24 h, cells were subjected to RNA isolation, followed by qRT-PCR analyses to examine the expression of miR-199a-3p (A), NLRP1 (B), IL1B (C) and IL18 (D). ***P<0.001. 3 Supplementary Figure 4. CHFTC specifically bond to the promoter of miR-199a-3p. (A and B) Effects of CtBP2 knockdown and overexpression on HDAC1 and FOXP3 protein levels. A549 cells were transfected with two CtBP2-specific shRNAs and pCDNA3-2×Flag-CtBP2 to obtain two CtBP2-knockdown cell lines (KD-1 and KD-2) (A) and two CtBP2-overexpression cells lines (OE-1 and OE-2) (B), respectively. -
Functional Characterization of Alternative Splice Variants of The
Functional characterization of alternative splice variants of the Drosophila GATA transcription factor serpent containing either one or two zinc finger domains Douaa Moussalem To cite this version: Douaa Moussalem. Functional characterization of alternative splice variants of the Drosophila GATA transcription factor serpent containing either one or two zinc finger domains. Genetics. Université Paul Sabatier - Toulouse III, 2020. English. NNT : 2020TOU30138. tel-03162582 HAL Id: tel-03162582 https://tel.archives-ouvertes.fr/tel-03162582 Submitted on 8 Mar 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE En vue de l’obtention du DOCTORAT DE L’UNIVERSITÉ DE TOULOUSE Délivré par l'Université Toulouse 3 - Paul Sabatier Présentée et soutenue par Douaa MOUSSALEM Le 12 octobre 2020 Titre : Functional characterization of alternative splice variants of the Drosophila GATA transcription factor Serpent containing either one or two zinc finger domains. Ecole doctorale : BSB - Biologie, Santé, Biotechnologies Spécialité : GENETIQUE MOLECULAIRE Unité de recherche : CBD - Centre de Biologie du Développement Thèse dirigée par Marc HAENLIN et Dani OSMAN Jury M. David CRIBBS, Président Mme Annarita MICCIO, Rapporteure Mme Kyra CAMPBELL, Rapporteure M. Samir MERABET, Rapporteur M. Marc HAENLIN, Directeur de thèse M. -
A Private 16Q24.2Q24.3 Microduplication in a Boy with Intellectual Disability, Speech Delay and Mild Dysmorphic Features
G C A T T A C G G C A T genes Article A Private 16q24.2q24.3 Microduplication in a Boy with Intellectual Disability, Speech Delay and Mild Dysmorphic Features Orazio Palumbo * , Pietro Palumbo , Ester Di Muro, Luigia Cinque, Antonio Petracca, Massimo Carella and Marco Castori Division of Medical Genetics, Fondazione IRCCS-Casa Sollievo della Sofferenza, San Giovanni Rotondo, 71013 Foggia, Italy; [email protected] (P.P.); [email protected] (E.D.M.); [email protected] (L.C.); [email protected] (A.P.); [email protected] (M.C.); [email protected] (M.C.) * Correspondence: [email protected]; Tel.: +39-088-241-6350 Received: 5 June 2020; Accepted: 24 June 2020; Published: 26 June 2020 Abstract: No data on interstitial microduplications of the 16q24.2q24.3 chromosome region are available in the medical literature and remain extraordinarily rare in public databases. Here, we describe a boy with a de novo 16q24.2q24.3 microduplication at the Single Nucleotide Polymorphism (SNP)-array analysis spanning ~2.2 Mb and encompassing 38 genes. The patient showed mild-to-moderate intellectual disability, speech delay and mild dysmorphic features. In DECIPHER, we found six individuals carrying a “pure” overlapping microduplication. Although available data are very limited, genomic and phenotype comparison of our and previously annotated patients suggested a potential clinical relevance for 16q24.2q24.3 microduplication with a variable and not (yet) recognizable phenotype predominantly affecting cognition. Comparing the cytogenomic data of available individuals allowed us to delineate the smallest region of overlap involving 14 genes. Accordingly, we propose ANKRD11, CDH15, and CTU2 as candidate genes for explaining the related neurodevelopmental manifestations shared by these patients. -
Systematic Integration of GATA Transcription Factors and Epigenomes Via IDEAS Paints the Regulatory Landscape of Hematopoietic Cells
Received: 2 July 2019 Accepted: 17 October 2019 DOI: 10.1002/iub.2195 CRITICAL REVIEW Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells Ross C. Hardison1 | Yu Zhang1 | Cheryl A. Keller1 | Guanjue Xiang1 | Elisabeth F. Heuston2 | Lin An1 | Jens Lichtenberg2 | Belinda M. Giardine1 | David Bodine2 | Shaun Mahony1 | Qunhua Li1 | Feng Yue3 | Mitchell J. Weiss4 | Gerd A. Blobel5 | James Taylor6 | Jim Hughes7 | Douglas R. Higgs7 | Berthold Göttgens8 1Departments of Biochemistry and Molecular Biology and of Statistics, The Abstract Pennsylvania State University, University Members of the GATA family of transcription factors play key roles in the dif- Park, PA ferentiation of specific cell lineages by regulating the expression of target 2 Genetics and Molecular Biology Branch, genes. Three GATA factors play distinct roles in hematopoietic differentiation. Hematopoiesis Section, National Institutes of Health, NHGRI, Bethesda, MD In order to better understand how these GATA factors function to regulate 3Department of Biochemistry and genes throughout the genome, we are studying the epigenomic and transcrip- Molecular Biology, The Pennsylvania State tional landscapes of hematopoietic cells in a model-driven, integrative fashion. University College of Medicine, Hershey, PA We have formed the collaborative multi-lab VISION project to conduct ValI- 4Hematology Department, St. Jude dated Systematic IntegratiON of epigenomic data in mouse and human hema- Children's Research Hospital, topoiesis. The epigenomic data included nuclease accessibility in chromatin, Memphis, TN CTCF occupancy, and histone H3 modifications for 20 cell types covering 5Children's Hospital of Philadelphia, hematopoietic stem cells, multilineage progenitor cells, and mature cells across Philadelphia, PA 6Departments of Biology and of Computer the blood cell lineages of mouse. -
Genomic Profiling of Short- and Long-Term Caloric Restriction Effects in the Liver of Aging Mice
Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice Shelley X. Cao, Joseph M. Dhahbi, Patricia L. Mote, and Stephen R. Spindler* Department of Biochemistry, University of California, Riverside, CA 92521 Edited by Bruce N. Ames, University of California, Berkeley, CA, and approved July 11, 2001 (received for review June 19, 2001) We present genome-wide microarray expression analysis of 11,000 aging and CR on gene expression. Control young (7-month-old; n ϭ genes in an aging potentially mitotic tissue, the liver. This organ has 3) and old (27-month-old; n ϭ 3) mice were fed 95 kcal of a a major impact on health and homeostasis during aging. The effects semipurified control diet (Harlan Teklad, Madison, WI; no. of life- and health-span-extending caloric restriction (CR) on gene TD94145) per week after weaning. Long-term CR (LT-CR) young expression among young and old mice and between long-term CR (7-month-old; n ϭ 3) and old (27-month-old; n ϭ 3) mice were fed (LT-CR) and short-term CR (ST-CR) were examined. This experimental 53 kcal of a semipurified CR diet (Harlan Teklad; no. TD94146) per design allowed us to accurately distinguish the effects of aging from week after weaning. Short-term CR (ST-CR) mice were 34-month- those of CR on gene expression. Aging was accompanied by changes old control mice that were switched to 80 kcal of CR diet for 2 in gene expression associated with increased inflammation, cellular weeks, followed by 53 kcal for 2 weeks (n ϭ 3). -
Variants of STAR, AMH and ZFPM2 /FOG2 May Contribute Towards the Broad Phenotype Observed in 46,XY DSD Patients with Heterozygou
International Journal of Molecular Sciences Article Variants of STAR, AMH and ZFPM2/FOG2 May Contribute towards the Broad Phenotype Observed in 46,XY DSD Patients with Heterozygous Variants of NR5A1 Idoia Martínez de LaPiscina 1 , Rana AA Mahmoud 2 , Kay-Sara Sauter 3 , Isabel Esteva 4, Milagros Alonso 5, Ines Costa 6, Jose Manuel Rial-Rodriguez 7, Amaia Rodríguez-Estévez 1,8, Amaia Vela 1,8, Luis Castano 1,8 and Christa E. Flück 3,* 1 Biocruces Bizkaia Health Research Institute, Cruces University Hospital, UPV/EHU, CIBERER, CIBERDEM, ENDO-ERN. Plaza de Cruces 12, 48903 Barakaldo, Spain; [email protected] (I.M.d.L.); [email protected] (A.R.-E.); [email protected] (A.V.); [email protected] (L.C.) 2 Department of Pediatrics, Endocrinology Section, Ain Shams University, 38 Abbasia, Nour Mosque, El-Mohamady, Al Waili, Cairo 11591, Egypt; [email protected] 3 Pediatric Endocrinology, Diabetology and Metabolism, Department of Pediatrics, Department of BioMedical Research, Inselspital, Bern University Hospital, University of Bern, Freiburgstrasse 15, 3010 Bern, Switzerland; [email protected] 4 Endocrinology Section, Gender Identity Unit, Regional University Hospital of Malaga, Av. de Carlos Haya, s/n, 29010 Málaga, Spain; [email protected] 5 Pediatric Endocrinology Department, Ramon y Cajal University Hospital, Ctra. de Colmenar Viejo km. 9, 100, 28034 Madrid, Spain; [email protected] 6 Pediatric Department, Manises -
FOG1 (ZFPM1) Rabbit Polyclonal Antibody – TA590381 | Origene
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TA590381 FOG1 (ZFPM1) Rabbit Polyclonal Antibody Product data: Product Type: Primary Antibodies Applications: ELISA Recommended Dilution: WB: 1:5000-1:20000; ELISA: 1:100-1:2000 Reactivity: Human Host: Rabbit Isotype: IgG Clonality: Polyclonal Immunogen: DNA immunization. This antibody is specific for the N Terminus Region of the target protein. Formulation: 20 mM Potassium Phosphate, 150 mM Sodium Chloride, pH 7.0 Concentration: 1.24526 mg/ml Purification: Purified from mouse ascites fluids or tissue culture supernatant by affinity chromatography (protein A/G) Conjugation: Unconjugated Storage: Store at -20°C as received. Stability: Stable for 12 months from date of receipt. Gene Name: zinc finger protein, FOG family member 1 Database Link: NP_722520 Entrez Gene 161882 Human Q8IX07 Background: FOG1/ZFPM1 was identified in a yeast two-hybrid screen for GATA-1 interacting proteins. GATA-1 is zinc finger transcription factor whose expression is restricted to hematopoietic cells and plays and essential role in erythroid development. FOG1/ZFPM1 is highly expressed in erythroid cells and megakaryocytes and appears to play both a GATA-1-dependent and independent role in erythropoiesis and megakaryopoiesis. FOG1/ZFPM1 associates with GATA-1 as well as GATA-2 and GATA-3 as a heterodimer to activate or repress transcription. Synonyms: FOG; FOG1; ZC2HC11A; ZNF89A; ZNF408 Note: This antibody was generated by SDIX's Genomic Antibody Technology ® (GAT). Learn about GAT This product is to be used for laboratory only. -
GATA Transcription Factors and Their Co-Regulators Guide the Development Of
GATA transcription factors and their co-regulators guide the development of GABAergic and serotonergic neurons in the anterior brainstem Laura Tikker Molecular and Integrative Biosciences Research Programme Faculty of Biological and Environmental Sciences Doctoral Programme Integrative Life Science University of Helsinki ACADEMIC DISSERTATION Doctoral thesis, to be presented for public examination, with the permission of the Faculty of Biological and Environmental Sciences of the University of Helsinki, in Raisio Hall (LS B2) in Forest Sciences building, Latokartanonkaari 7, Helsinki, on the 3rd of April, 2020 at 12 noon. Supervisor Professor Juha Partanen University of Helsinki (Finland) Thesis Committee members Docent Mikko Airavaara University of Helsinki (Finland) Professor Timo Otonkoski University of Helsinki (Finland) Pre-examinators Docent Satu Kuure University of Helsinki (Finland) Research Scientist Siew-Lan Ang, PhD The Francis Crick Institute (United Kingdom) Opponent Research Scientist Johan Holmberg, PhD Karolinska Institutet (Sweden) Custos Professor Juha Partanen University of Helsinki (Finland) The Faculty of Biological and Environmental Sciences, University of Helsinki, uses the Urkund system for plagiarism recognition to examine all doctoral dissertations. ISBN: 978-951-51-5930-4 (paperback) ISBN: 978-951-51-5931-1 (PDF) ISSN: 2342-3161 (paperback) ISSN: 2342-317X (PDF) Printing house: Painosalama Oy Printing location: Turku, Finland Printed on: 03.2020 Cover artwork: Serotonergic neurons in adult dorsal raphe (mouse). -
Bioinformatics Analyses and Biological Function of Lncrna ZFPM2‑AS1 and ZFPM2 Gene in Hepatocellular Carcinoma
ONCOLOGY LETTERS 19: 3677-3686, 2020 Bioinformatics analyses and biological function of lncRNA ZFPM2‑AS1 and ZFPM2 gene in hepatocellular carcinoma YI LUO1*, XIAOJUN WANG2*, LING MA3*, ZHIHUA MA4, SHEN LI5, XIAOYU FANG6 and XIANGYU MA1 1Department of Epidemiology, College of Preventive Medicine, Army Military Medical University; 2Department of Hepatobiliary Surgery, The First Affiliated Hospital of Army Military Medical University, Chongqing 400038; 3Department of Pediatrics, Banan People's Hospital of Chongqing, Chongqing 401320; 4Department of Anesthesia, The First Affiliated Hospital of Army Military Medical University, Chongqing 400038; 5The Second Clinical College, Chongqing Medical University, Chongqing 400010; 6College of Preventive Medicine, Southwest Medical University, Luzhou, Sichuan 646000, P.R. China Received August 6, 2019; Accepted November 14, 2020 DOI: 10.3892/ol.2020.11485 Abstract. Hepatocellular carcinoma (HCC) remains one of the demonstrated that lncRNA ZFPM2-AS1 and the ZFPM2 gene most lethal malignant tumors worldwide; however, the etiology may contribute to the occurrence and prognosis of HCC. These of HCC still remains poorly understood. In the present study, findings may provide a novel understanding of the molecular cancer-omics databases, including The Cancer Genome Atlas, mechanisms underlying the occurrence and prognosis of HCC. GTEx and Gene Expression Omnibus, were systematically analyzed in order to investigate the role of the long non-coding Introduction RNA (lncRNA) zinc finger protein, FOG family member 2-antisense 1 (ZFPM2-AS1) and the zinc finger protein, Hepatocellular carcinoma (HCC) is one of the most lethal FOG family member 2 (ZFPM2) gene in the occurrence malignant tumors worldwide, with an incidence rate of and progression of HCC. -
Chromosomal Microarray Analysis in Turkish Patients with Unexplained Developmental Delay and Intellectual Developmental Disorders
177 Arch Neuropsychitry 2020;57:177−191 RESEARCH ARTICLE https://doi.org/10.29399/npa.24890 Chromosomal Microarray Analysis in Turkish Patients with Unexplained Developmental Delay and Intellectual Developmental Disorders Hakan GÜRKAN1 , Emine İkbal ATLI1 , Engin ATLI1 , Leyla BOZATLI2 , Mengühan ARAZ ALTAY2 , Sinem YALÇINTEPE1 , Yasemin ÖZEN1 , Damla EKER1 , Çisem AKURUT1 , Selma DEMİR1 , Işık GÖRKER2 1Faculty of Medicine, Department of Medical Genetics, Edirne, Trakya University, Edirne, Turkey 2Faculty of Medicine, Department of Child and Adolescent Psychiatry, Trakya University, Edirne, Turkey ABSTRACT Introduction: Aneuploids, copy number variations (CNVs), and single in 39 (39/123=31.7%) patients. Twelve CNV variant of unknown nucleotide variants in specific genes are the main genetic causes of significance (VUS) (9.75%) patients and 7 CNV benign (5.69%) patients developmental delay (DD) and intellectual disability disorder (IDD). were reported. In 6 patients, one or more pathogenic CNVs were These genetic changes can be detected using chromosome analysis, determined. Therefore, the diagnostic efficiency of CMA was found to chromosomal microarray (CMA), and next-generation DNA sequencing be 31.7% (39/123). techniques. Therefore; In this study, we aimed to investigate the Conclusion: Today, genetic analysis is still not part of the routine in the importance of CMA in determining the genomic etiology of unexplained evaluation of IDD patients who present to psychiatry clinics. A genetic DD and IDD in 123 patients. diagnosis from CMA can eliminate genetic question marks and thus Method: For 123 patients, chromosome analysis, DNA fragment analysis alter the clinical management of patients. Approximately one-third and microarray were performed. Conventional G-band karyotype of the positive CMA findings are clinically intervenable.