ABSTRACT KERNS, JAMES PATRICK. Biology and Management Of
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Phytopythium: Molecular Phylogeny and Systematics
Persoonia 34, 2015: 25–39 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685382 Phytopythium: molecular phylogeny and systematics A.W.A.M. de Cock1, A.M. Lodhi2, T.L. Rintoul 3, K. Bala 3, G.P. Robideau3, Z. Gloria Abad4, M.D. Coffey 5, S. Shahzad 6, C.A. Lévesque 3 Key words Abstract The genus Phytopythium (Peronosporales) has been described, but a complete circumscription has not yet been presented. In the present paper we provide molecular-based evidence that members of Pythium COI clade K as described by Lévesque & de Cock (2004) belong to Phytopythium. Maximum likelihood and Bayesian LSU phylogenetic analysis of the nuclear ribosomal DNA (LSU and SSU) and mitochondrial DNA cytochrome oxidase Oomycetes subunit 1 (COI) as well as statistical analyses of pairwise distances strongly support the status of Phytopythium as Oomycota a separate phylogenetic entity. Phytopythium is morphologically intermediate between the genera Phytophthora Peronosporales and Pythium. It is unique in having papillate, internally proliferating sporangia and cylindrical or lobate antheridia. Phytopythium The formal transfer of clade K species to Phytopythium and a comparison with morphologically similar species of Pythiales the genera Pythium and Phytophthora is presented. A new species is described, Phytopythium mirpurense. SSU Article info Received: 28 January 2014; Accepted: 27 September 2014; Published: 30 October 2014. INTRODUCTION establish which species belong to clade K and to make new taxonomic combinations for these species. To achieve this The genus Pythium as defined by Pringsheim in 1858 was goal, phylogenies based on nuclear LSU rRNA (28S), SSU divided by Lévesque & de Cock (2004) into 11 clades based rRNA (18S) and mitochondrial DNA cytochrome oxidase1 (COI) on molecular systematic analyses. -
ABSTRACT REEVES, ELLA ROBYN. Pythium Spp. Associated with Root
ABSTRACT REEVES, ELLA ROBYN. Pythium spp. Associated with Root Rot and Stunting of Winter Field and Cover Crops in North Carolina. (Under the direction of Dr. Barbara Shew and Dr. Jim Kerns). Soft red winter wheat (Triticum aestivum) was valued at over $66 million in North Carolina in 2019, but mild to severe stunting and root rot limit yields in the Coastal Plain region during years with above-average rainfall. Pythium irregulare, P. vanterpoolii, and P. spinosum were previously identified as causal agents of stunting and root rot of winter wheat in this region. Annual double-crop rotation systems that incorporate winter wheat, or other winter crops such as clary sage, rapeseed, or a cover crop are common in the Coastal Plain of North Carolina. Stunting and root rot reduce yields of clary sage, and limit stand establishment and biomass accumulation of other winter crops in wet soils, but the role that Pythium spp. play in root rot of these crops is not understood, To investigate species prevalence, isolates of Pythium were collected from stunted winter wheat, clary sage, rye, rapeseed, and winter pea plants collected in eastern North Carolina during the growing season of 2018-2019, and from all crops except winter wheat again in 2019-2020. A total of 534 isolates were identified from all hosts. P. irregulare (32%), P. vanterpoolii (17%), and P. spinosum (16%) were the species most frequently recovered from wheat. P. irregulare (37% of all isolates) and members of the species complex Pythium sp. cluster B2A (28% of all isolates) comprised the majority of isolates collected from clary sage, rye, rapeseed, and winter pea. -
Revisiting Salisapiliaceae
VOLUME 3 JUNE 2019 Fungal Systematics and Evolution PAGES 171–184 doi.org/10.3114/fuse.2019.03.10 RevisitingSalisapiliaceae R.M. Bennett1,2, M. Thines1,2,3* 1Senckenberg Biodiversity and Climate Research Centre (SBik-F), Senckenberganlage 25, 60325 Frankfurt am Main, Germany 2Department of Biological Sciences, Institute of Ecology, Evolution and Diversity, Goethe University Frankfurt am Main, Max-von-Laue-Str. 9, 60438, Frankfurt am Main, Germany 3Integrative Fungal Research Cluster (IPF), Georg-Voight-Str. 14-16, 60325 Frankfurt am Main, Germany *Corresponding author: [email protected] Key words: Abstract: Of the diverse lineages of the Phylum Oomycota, saprotrophic oomycetes from the salt marsh and mangrove Estuarine oomycetes habitats are still understudied, despite their ecological importance. Salisapiliaceae, a monophyletic and monogeneric Halophytophthora taxon of the marine and estuarine oomycetes, was introduced to accommodate species with a protruding hyaline mangroves apical plug, small hyphal diameter and lack of vesicle formation during zoospore release. At the time of description of new taxa Salisapilia, only few species of Halophytophthora, an ecologically similar, phylogenetically heterogeneous genus from phylogeny which Salisapilia was segregated, were included. In this study, a revision of the genus Salisapilia is presented, and five Salisapilia new combinations (S. bahamensis, S. elongata, S. epistomia, S. masteri, and S. mycoparasitica) and one new species (S. coffeyi) are proposed. Further, the species description ofS. nakagirii is emended for some exceptional morphological and developmental characteristics. A key to the genus Salisapilia is provided and its generic circumscription and character evolution in cultivable Peronosporales are discussed. Effectively published online: 22 March 2019. Editor-in-Chief Prof. -
Pythium Graminicola Subr. on Barley
Volume 25 Article 1 Number 287 Pythium Graminicola Subr. on Barley May 1941 Pythium Graminicola Subr. on Barley Wen-Chun Ho Iowa State College C. H. Meredith Iowa State College I. E. Melhus Iowa State College Follow this and additional works at: http://lib.dr.iastate.edu/researchbulletin Part of the Agriculture Commons, Botany Commons, and the Plant Pathology Commons Recommended Citation Ho, Wen-Chun; Meredith, C. H.; and Melhus, I. E. (1941) "Pythium Graminicola Subr. on Barley," Research Bulletin (Iowa Agriculture and Home Economics Experiment Station): Vol. 25 : No. 287 , Article 1. Available at: http://lib.dr.iastate.edu/researchbulletin/vol25/iss287/1 This Article is brought to you for free and open access by the Iowa Agricultural and Home Economics Experiment Station Publications at Iowa State University Digital Repository. It has been accepted for inclusion in Research Bulletin (Iowa Agriculture and Home Economics Experiment Station) by an authorized editor of Iowa State University Digital Repository. For more information, please contact [email protected]. May, 1941 Research Bulletin 287 Pythjum GramjnjcoJa Subr. on Barley By WEN-CHUN Ho, C. H. MEREDITH and 1. E. MELHUS AGRICULTURAL EXPERIMENT STATION IOWA STATE COLLEGE OF AGRICULTURE AND MECHANIC ARTS BOTANY AND PLANT PATHOLOGY SECTION AMES, IOWA CONTENTS Page Summary 289 Pertinent literature . .. 291 Syn1ptoms ........................................... 294 Causal agent ......................................... 296 Growth and sporulation of the pathogen on steamed car- rots and hemp seeds. .. 298 Homothallism in Pythium graminicola. .. 299 Effect of temperature and soil reaction on the development of Pythium graminicola Subr.. .. 300 Pathogenicity of Pythium graminicola Subr. on barley ....... 303 Penetration ...................................... 303 Effect of temperature on pathogenicity. -
Some Aspects on the Taxonomy, Ecology, and Histology of Pythium
SOME ASPECTS ON THE TAXONOMY, ECOLOGY, AND HISTOLOGY OF PYTHIUM PRINGSHEIM SPECIES ASSOCIATED WITH FUCUS DISTICHUS IN ESTUARIES AND MARINE HABITATS OF BRITISH COLUMBIA by TIMOTHY ALAN THOMPSON B.Sc., University Of Arizona, Tucson, 1979 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE in THE FACULTY OF GRADUATE STUDIES (Department of Botany) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 1981 Timothy Alan Thompson, 1981 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. BOTANY Department of The University of British Columbia 2075 Wesbrook Place Vancouver, Canada V6T 1W5 rjate January 12, 1982 i i ABSTRACT Pythium un.dula.tum var. litorale Hohnk was found to infect Fucus distichus in the Squamish River estuary of southern British Columbia. This thesis adresses the questions of: 1.) whether this symbiosis can be found outside the Squamish River estuary, 2.) relationship of the infection within the estuary to the distribution of P. undulatum var. litorale in estuarine sediments, 3.) taxonomically defining those species associated with Fucus and/or in estuarine sediments, and 4.) the host parasite relationship as determined by means of histochemical and light microscope observations. -
University of Florida Thesis Or Dissertation Formatting
INNOVATIVE TOOLS FOR STUDYING PLANT-RELATED OOMYCETE POPULATIONS OF POTENTIAL AND CURRENT THREAT IN AGRICULTURE IN ECUADOR By MARIA FERNANDA RATTI TORRES A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 2018 © 2018 Maria Fernanda Ratti Torres To my Obi-Wan Roberto, Yoda one for me. You have been nothing but supportive during these years, you make me proud of being your wife, but above all, you make me immensely happy. This is for you and for a marriage that has been put to rest for so long and it is ready to resume. ACKNOWLEDGMENTS I wish to thank my parents for all their effort and the patience, they are my pillar without whom I could not have pursued my Ph.D. studies. Also to my siblings Andrea and Pablo, my brother in law Carlos and my nephews, not only for their support, but for joking around all the time and cheering me up during this journey. Erica M. Goss deserves a special section only for her, but the formatting will not allow it. I cannot imagine having spent these years under anybody else’s guidance. She always challenged me to be better, to be calmed during stressful situations and to trust in myself. Her advices will be forever in my mind. Doing this research would have been impossible without helping hands around the world: Thanks to Esther Lilia P. for all her support, to Juan C., Carlos A., Jerry L. -
A Desk Study to Review Global Knowledge on Best Practice for Oomycete Root-Rot Detection and Control
Project title: A desk study to review global knowledge on best practice for oomycete root-rot detection and control Project number: CP 126 Project leader: Dr Tim Pettitt Report: Final report, March 2015 Previous report: None Key staff: Dr G M McPherson Dr Alison Wakeham Location of project: University of Worcester Stockbridge Technology Centre Industry Representative: Russ Woodcock, Bordon Hill Nurseries Ltd, Bordon Hill, Stratford-upon-Avon, Warwickshire, CV37 9RY Date project commenced: April 2014 Date project completed April 2015 AHDB Horticulture is a Division of the Agriculture and Horticulture Development Board DISCLAIMER While the Agriculture and Horticulture Development Board seeks to ensure that the information contained within this document is accurate at the time of printing, no warranty is given in respect thereof and, to the maximum extent permitted by law the Agriculture and Horticulture Development Board accepts no liability for loss, damage or injury howsoever caused (including that caused by negligence) or suffered directly or indirectly in relation to information and opinions contained in or omitted from this document. ©Agriculture and Horticulture Development Board 2015. No part of this publication may be reproduced in any material form (including by photocopy or storage in any medium by electronic mean) or any copy or adaptation stored, published or distributed (by physical, electronic or other means) without prior permission in writing of the Agriculture and Horticulture Development Board, other than by reproduction in an unmodified form for the sole purpose of use as an information resource when the Agriculture and Horticulture Development Board or AHDB Horticulture is clearly acknowledged as the source, or in accordance with the provisions of the Copyright, Designs and Patents Act 1988. -
Plant Root Pathogens Over 120,000 Years of Temperate Rainforest Ecosystem Development 2 3 Ian A
bioRxiv preprint doi: https://doi.org/10.1101/042341; this version posted March 4, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Plant root pathogens over 120,000 years of temperate rainforest ecosystem development 2 3 Ian A. Dickie1*, Angela M. Wakelin1, Laura Martinez-Garcia2, Sarah J. Richardson3, Andreas 4 Makiola1, Jason M. Tylianakis4,5 5 *Corresponding author: Bio-Protection Research Centre, Lincoln University, P O Box 85084, 6 Lincoln 7647, New Zealand +64 03 423 0983 7 1 Bio-Protection Research Centre, Lincoln University, Lincoln, New Zealand 8 2 Department of Soil Quality, Wageningen University, Wageningen, The Netherlands. 9 3 Landcare Research, Lincoln, New Zealand 10 4 Centre for Integrative Ecology, School of Biological Sciences, University of Canterbury, 11 Christchurch, New Zealand 12 5 Department of Life Sciences, Silwood Park Campus, Imperial College London, UK 13 14 author emails: [email protected]; [email protected]; 15 [email protected]; [email protected]; 16 [email protected]; [email protected] 17 18 running title: Plant pathogens and ecosystem development 19 20 Article type: Letter 21 Keywords: forest diversity, molecular ecology, Oomycetes, pathogen ecology, pedogenesis, 22 retrogression, succession 23 Word wount: Abstract, 149; main text 5000; 50 references 24 4 figures; 1 supplemental file 25 26 Authorship: The original samples used in this paper were part of a study led by LMG and 27 IAD, and were collected in the field by LMG, IAD, JMT and SJR. -
Phytopythium: Molecular Phylogeny and Systematics
Persoonia 34, 2015: 25–39 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685382 Phytopythium: molecular phylogeny and systematics A.W.A.M. de Cock1, A.M. Lodhi2, T.L. Rintoul 3, K. Bala 3, G.P. Robideau3, Z. Gloria Abad4, M.D. Coffey 5, S. Shahzad 6, C.A. Lévesque 3 Key words Abstract The genus Phytopythium (Peronosporales) has been described, but a complete circumscription has not yet been presented. In the present paper we provide molecular-based evidence that members of Pythium COI clade K as described by Lévesque & de Cock (2004) belong to Phytopythium. Maximum likelihood and Bayesian LSU phylogenetic analysis of the nuclear ribosomal DNA (LSU and SSU) and mitochondrial DNA cytochrome oxidase Oomycetes subunit 1 (COI) as well as statistical analyses of pairwise distances strongly support the status of Phytopythium as Oomycota a separate phylogenetic entity. Phytopythium is morphologically intermediate between the genera Phytophthora Peronosporales and Pythium. It is unique in having papillate, internally proliferating sporangia and cylindrical or lobate antheridia. Phytopythium The formal transfer of clade K species to Phytopythium and a comparison with morphologically similar species of Pythiales the genera Pythium and Phytophthora is presented. A new species is described, Phytopythium mirpurense. SSU Article info Received: 28 January 2014; Accepted: 27 September 2014; Published: 30 October 2014. INTRODUCTION establish which species belong to clade K and to make new taxonomic combinations for these species. To achieve this The genus Pythium as defined by Pringsheim in 1858 was goal, phylogenies based on nuclear LSU rRNA (28S), SSU divided by Lévesque & de Cock (2004) into 11 clades based rRNA (18S) and mitochondrial DNA cytochrome oxidase1 (COI) on molecular systematic analyses. -
Systematics and Molecular Pathogenesis of Oomycetes with Emphasis on Flagellar Genes
Systematics and molecular pathogenesis of oomycetes with emphasis on flagellar genes by Gregg P. Robideau A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario ©2012, Gregg P. Robideau Library and Archives Bibliotheque et Canada Archives Canada Published Heritage Direction du 1+1 Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-94228-4 Our file Notre reference ISBN: 978-0-494-94228-4 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, preter, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distrbute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these. Ni thesis. Neither the thesis nor la these ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent etre imprimes ou autrement printed or otherwise reproduced reproduits sans son autorisation. -
Environmental and Cultural Factors Affecting the Persistence and Efficacy of Fungicides on Golf
Environmental and cultural factors affecting the persistence and efficacy of fungicides on golf course turfgrass. By Paul Lawrence Koch A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Plant Pathology) at the UNIVERSITY OF WISCONSIN – MADISON 2012 Date of final oral examination: 7/26/2012 The dissertation is approved by the following members of the Final Oral Committee: James P. Kerns, Assistant Professor, Plant Pathology Patricia S. McManus, Professor, Plant Pathology Douglas I. Rouse, Professor, Plant Pathology John C. Stier, Professor, Horticulture Nancy P. Keller, Professor, Medical Microbiology i ABSTRACT Successful management of turfgrass diseases such as Microdochium patch and dollar spot on intensively-maintained golf course turf requires fungicide applications throughout the year. Repeat fungicide applications can have negative financial, environmental, and toxicological consequences and their use should be limited when possible. Research was conducted to determine the factors that influence degradation of the common turfgrass fungicides chlorothalonil and iprodione in a winter environment and under varying temperatures from 2009- 2012. Soil temperature, snow melt, and winter rains had the largest influence on fungicide degradation in a winter environment. Photodegradation, as influenced by the presence or absence of snow cover, did not impact fungicide degradation during winter. Temperature was directly related to degradation rates of both fungicides. The most likely mechanisms influencing degradation at higher temperatures were plant and bacterial metabolism. Strategies for reducing fungicide inputs were also explored. Alternative fungicide application timings in the spring, made well before the onset of dollar spot symptoms, delayed the onset of disease symptoms and reduced the annual number of fungicide applications by up to two applications without sacrificing turf quality. -
Oomycete Community Diversity and Pathogenicity Associated with Soybean in Ohio DISSERTATION Presented in Partial Fulfillment Of
Oomycete Community Diversity and Pathogenicity Associated with Soybean in Ohio DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Krystel A. Navarro-Acevedo Graduate Program in Plant Pathology The Ohio State University 2019 Dissertation Committee: Dr. Anne E. Dorrance, Advisor Dr. Jason Slot, Member Dr. Maria Soledad Benitez-Ponce, Member Dr. Feng Qu, Member Dr. Andrew Michel, Member Copyrighted by Krystel A. Navarro-Acevedo 2019 Abstract The oomycetes, Phytophthora (Ph.), Phytopythium (Pp.), and Pythium (Py.) cause detrimental effects to soybean yields when susceptible cultivars are planted, and conducive conditions occur. Soils with high clay content found in many soybean production areas of Ohio paired with heavy rainfall, allows for water retention for longer periods of time. This enables the germination of oospores and mobility of zoospores towards soybean roots. Subsequently, infections occur and early symptoms include pre-and post- emergence damping-off of soybean seed and seedlings. In addition, mid-season infections lead to root rots but one species, Phytophthora sojae causes stem rot which results in plant death. Within the genus Phytophthora, only Ph. sojae and Ph. sansomeana have been recovered from soybean seedlings and reported as pathogens. In contrast, a vast diversity of Pythium species have been recovered from soybean seedlings across major soybean producing states in the U.S. and Canada. Pythium sylvaticum, Py. irregulare, Py. ultimum var. ultimum, Py. ultimum var. sporangiiferum and Py. heterothallicum are among the most frequently recovered species. More importantly, more than one species has been recovered from symptomatic seedlings or roots, suggesting that these occur as species complexes.