The Immoveable Barrier That Open Access Advocates Underestimated
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PATHWAYS to OPEN ACCESS University of California Libraries
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Copyright, Fair Use, Scholarly Communication, etc. Libraries at University of Nebraska-Lincoln 2-27-2018 PATHWAYS TO OPEN ACCESS University of California Libraries Follow this and additional works at: https://digitalcommons.unl.edu/scholcom Part of the Intellectual Property Law Commons, Scholarly Communication Commons, and the Scholarly Publishing Commons University of California Libraries, "PATHWAYS TO OPEN ACCESS" (2018). Copyright, Fair Use, Scholarly Communication, etc.. 74. https://digitalcommons.unl.edu/scholcom/74 This Article is brought to you for free and open access by the Libraries at University of Nebraska-Lincoln at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Copyright, Fair Use, Scholarly Communication, etc. by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. PATHWAYS TO OPEN ACCESS Approved 27 February 2018 Prepared by the University of California Libraries PATHWAYS TO OPEN ACCESS Table of Contents Introduction 1 Definitions 1 Approaches & Strategies 2 Green OA 2 Gold OA, APC-based 12 Gold OA, Non-APC Funded 23 Universal Strategies 28 Possible Next Steps 35 Green OA 35 Gold OA, APC-based 36 Gold OA, Non-APC-based 37 Universal Strategies 38 Selected Bibliography 40 INTRODUCTION Pursuant to the University of California (UC) Council of University Librarian’s (CoUL)1 3 August 2017 charge, this Pathways to OA Working Group2 has identified the current universe of Open Access (OA) approaches, and has analyzed the suite of strategies available for effectuating those approaches. Each approach described within this Pathways document offers unique and, in some cases, overlapping challenges, opportunities, and room for experimentation. -
Preprints, Institutional Repositories, and the Version of Record
Purdue University Purdue e-Pubs Charleston Library Conference Preprints, Institutional Repositories, and the Version of Record Judy Luther Informed Strategies, [email protected] Ivy Anderson California Digital Library Monica Bradford Science John Inglis bioRxiv Follow this and additional works at: https://docs.lib.purdue.edu/charleston Part of the Library and Information Science Commons An indexed, print copy of the Proceedings is also available for purchase at: http://www.thepress.purdue.edu/series/charleston. You may also be interested in the new series, Charleston Insights in Library, Archival, and Information Sciences. Find out more at: http://www.thepress.purdue.edu/series/charleston-insights-library-archival- and-information-sciences. Judy Luther, Ivy Anderson, Monica Bradford, and John Inglis, "Preprints, Institutional Repositories, and the Version of Record" (2017). Proceedings of the Charleston Library Conference. http://dx.doi.org/10.5703/1288284316717 This document has been made available through Purdue e-Pubs, a service of the Purdue University Libraries. Please contact [email protected] for additional information. Preprints, Institutional Repositories, and the Version of Record Presented by Judy Luther, Informed Strategies; Ivy Anderson, California Digital Library; Monica Bradford, Science; and John Inglis, bioRxiv The following is a transcription of a live presentation I thought, “I’m not even sure I have the questions to at the 2017 Charleston Conference. ask at this point.” Judy Luther: I’m Judy Luther. I have a background I have a very helpful panel who has come up with that pretty much covers all different sectors of the some very good questions. The one percolating for market. I started as an academic librarian. -
Bioinformatics
Bioinformatics Bioinformatics is the combination of biology and information technology. The discipline encompasses any computational tools and methods used to manage, analyze and manipulate large sets of biological data. Essentially, bioinformatics has three components: The creation of databases allowing the storage and management of large biological data sets. The development of algorithms and statistics to determine relationships among members of large data sets. The use of these tools for the analysis and interpretation of various types of biological data, including DNA, RNA and protein sequences, protein structures, gene expression profiles, and biochemical pathways. The term bioinformatics first came into use in the 1990s and was originally synonymous with the management and analysis of DNA, RNA and protein sequence data. Computational tools for sequence analysis had been available since the 1960s, but this was a minority interest until advances in sequencing technology led to a rapid expansion in the number of stored sequences in databases such as GenBank. Now, the term has expanded to incorporate many other types of biological data, for example protein structures, gene expression profiles and protein interactions. Each of these areas requires its own set of databases, algorithms and statistical methods. Bioinformatics is largely, although not exclusively, a computer-based discipline. Computers are important in bioinformatics for two reasons: First, many bioinformatics problems require the same task to be repeated millions of times. For example, comparing a new sequence to every other sequence stored in a database or comparing a group of sequences systematically to determine evolutionary relationships. In such cases, the ability of computers to process information and test alternative solutions rapidly is indispensable. -
Open Access Availability of Scientific Publications
Analytical Support for Bibliometrics Indicators Open access availability of scientific publications Analytical Support for Bibliometrics Indicators Open access availability of scientific publications* Final Report January 2018 By: Science-Metrix Inc. 1335 Mont-Royal E. ▪ Montréal ▪ Québec ▪ Canada ▪ H2J 1Y6 1.514.495.6505 ▪ 1.800.994.4761 [email protected] ▪ www.science-metrix.com *This work was funded by the National Science Foundation’s (NSF) National Center for Science and Engineering Statistics (NCSES). Any opinions, findings, conclusions or recommendations expressed in this report do not necessarily reflect the views of NCSES or the NSF. The analysis for this research was conducted by SRI International on behalf of NSF’s NCSES under contract number NSFDACS1063289. Analytical Support for Bibliometrics Indicators Open access availability of scientific publications Contents Contents .............................................................................................................................................................. i Tables ................................................................................................................................................................. ii Figures ................................................................................................................................................................ ii Abstract ............................................................................................................................................................ -
March 13, 2019 AMS Primer on Open Access
Robert M. Harington Associate Executive Director, Publishing Publishing Division [email protected] 401.455.4165 401.331.3842 www.ams.org AMS Primer on Open Access Introduction Open access (OA) refers to published scholarly content (such as journal research articles, and books) made openly available in online digital form. This content is free of charge at point of use, free of most copyright and licensing restrictions, and free of technical or other barriers to access (such as digital rights management or requirements to register to access). Communicating and sharing discoveries is an essential part of the research process. Any author of a research paper wants it to be read, and the fewer restrictions placed on access to those papers means that more people may benefit from the research. In many ways, the OA movement is very much in line with the shared mission of researchers, scholarly societies, and publishers. Journal publishing programs perform many services for researchers including peer review, communication, and career advancement. In society publishing programs, revenue from journal publishing directly supports the important work societies do on behalf of their scholarly communities. How do we maximize the dissemination of knowledge while at the same time maintaining both a high level of quality and a sustainable financial future for our professional society, the AMS? The OA movement can be traced to a letter from the year 2000, signed by around 34,000 researchers, demanding publishers make all content free after 6 months. The signatories of the letter said they would boycott any journals refusing to comply. In 2002, the accepted definition of OA was encapsulated in the Budapest Open Access Initiative declaration. -
Islamic Psychology
Islamic Psychology Islamic Psychology or ilm an-nafs (science of the soul) is an important introductory textbook drawing on the latest evidence in the sub-disciplines of psychology to provide a balanced and comprehensive view of human nature, behaviour and experience. Its foundation to develop theories about human nature is based upon the writings of the Qur’an, Sunnah, Muslim scholars and contemporary research findings. Synthesising contemporary empirical psychology and Islamic psychology, this book is holistic in both nature and process and includes the physical, psychological, social and spiritual dimensions of human behaviour and experience. Through a broad and comprehensive scope, the book addresses three main areas: Context, perspectives and the clinical applications of applied psychology from an Islamic approach. This book is a core text on Islamic psychology for undergraduate and postgraduate students and those undertaking continuing professional development courses in Islamic psychology, psychotherapy and counselling. Beyond this, it is also a good supporting resource for teachers and lecturers in this field. Dr G. Hussein Rassool is Professor of Islamic Psychology, Consultant and Director for the Riphah Institute of Clinical and Professional Psychology/Centre for Islamic Psychology, Pakistan. He is accountable for the supervision and management of the four psychology departments, and has responsibility for scientific, educational and professional standards, and efficiency. He manages and coordinates the RICPP/Centre for Islamic Psychology programme of research and educational development in Islamic psychology, clinical interventions and service development, and liaises with the Head of the Departments of Psychology to assist in the integration of Islamic psychology and Islamic ethics in educational programmes and development of research initiatives and publication of research. -
Incites Lunedi’ 26 Ottobre 14.30-15.30 Questa Sessione Tratta Le Nozioni Basiche Di Utilizzo Di Incites
NOZIONI DI BASE InCites Lunedi’ 26 ottobre 14.30-15.30 Questa sessione tratta le nozioni basiche di utilizzo di InCites. InCites dataset: come e quando viene creato e dove CNR trovare le informazioni relative. Come esportare un set di dati da Web of Science a InCites e come visualizzare un set di papers da InCites su Web of Science. Altre possibilità di caricamento di un dataset. Come funzionano i filtri e come selezionare i vari indicatori. Come visualizzare i diversi tipi di grafici, come salvare e/o condividere un “tile”. Come esportare le tabelle, i grafici e le metriche a livello di articolo. Registrazione → LE PRINCIPALI CARATTERISTICHE DEI VARI MODULI E DEI SYSTEM REPORTS Martedi’ 27 ottobre 14.30-15.30 Questa sessione prende in considerazione le principali caratteristiche dei 6 moduli Explorer e dei due tipi di report di sistema. Le differenze tra i vari moduli e come è possibile passare da un modulo all’altro (refocus). Le unificazioni sottostanti (organizzazioni, editori, agenzie di finanziamento): limiti e caratteristiche. Le baselines, ovverosia come crearsi un proprio benchmark. La classificazione per aree geografiche NUTS. Limiti ed esempi. Le collaborazioni internazionali e con l’industria. Le analisi sull’Open Access. Registrazione → LA VALUTAZIONE DI UN PAPER, DI UN AUTORE O DI UNA ISTITUZIONE Mercoledi’ 28 ottobre 11.00-12.00 Questa sessione presenta l’utilizzo dei dati di Web of Science Core Collection per le valutazioni: il concetto di citazione (e indicatore) normalizzato, l’importanza della categorizzazione, i principali ranking internazionali, la passata e la presente VQR, i percentili, la posizione degli autori, i dati per la ASN (con ESCI) e l’analisi dei profili personali, il problema delle autocitazioni, i Web Services. -
Download Full White Paper
Open Access White Paper University of Oregon SENATE SUB-COMMITTEE ON OPEN ACCESS I. Executive Summary II. Introduction a. Definition and History of the Open Access Movement b. History of Open Access at the University of Oregon c. The Senate Subcommittee on Open Access at the University of Oregon III. Overview of Current Open Access Trends and Practices a. Open Access Formats b. Advantages and Challenges of the Open Access Approach IV. OA in the Process of Research & Dissemination of Scholarly Works at UO a. A Summary of Current Circumstances b. Moving Towards Transformative Agreements c. Open Access Publishing at UO V. Advancing Open Access at the University of Oregon and Beyond a. Barriers to Moving Forward with OA b. Suggestions for Local Action at UO 1 Executive Summary The state of global scholarly communications has evolved rapidly over the last two decades, as libraries, funders and some publishers have sought to hasten the spread of more open practices for the dissemination of results in scholarly research worldwide. These practices have become collectively known as Open Access (OA), defined as "the free, immediate, online availability of research articles combined with the rights to use these articles fully in the digital environment." The aim of this report — the Open Access White Paper by the Senate Subcommittee on Open Access at the University of Oregon — is to review the factors that have precipitated these recent changes and to explain their relevance for members of the University of Oregon community. Open Access History and Trends Recently, the OA movement has gained momentum as academic institutions around the globe have begun negotiating and signing creative, new agreements with for-profit commercial publishers, and as innovations to the business models for disseminating scholarly research have become more widely adopted. -
Open Access Self-Archiving of Refereed Research: a Post-Gutenberg Compromise Stevan Harnad University of Southhampton, [email protected]
Against the Grain Volume 23 | Issue 2 Article 9 April 2011 Open Access Self-Archiving of Refereed Research: A Post-Gutenberg Compromise Stevan Harnad University of Southhampton, [email protected] Follow this and additional works at: https://docs.lib.purdue.edu/atg Part of the Library and Information Science Commons Recommended Citation Harnad, Stevan (2011) "Open Access Self-Archiving of Refereed Research: A Post-Gutenberg Compromise," Against the Grain: Vol. 23: Iss. 2, Article 9. DOI: https://doi.org/10.7771/2380-176X.5786 This document has been made available through Purdue e-Pubs, a service of the Purdue University Libraries. Please contact [email protected] for additional information. However, many publishers either do not make our collective understanding of the type of de- Journal Article Versioning is … any changes to the version of record or display mands from scholarly readers and practitioners from page 20 non-standard indicators when such changes oc- for article versioning standards. cur. SAGE is prepared to contribute to shared practices to release material of the highest pos- efforts toward clear and acceptable practices sible quality, published within known patterns for iterations beyond the version of record. Endnotes and bearing standard mechanisms of cataloging SAGE is prepared to launch another wave of 1. The summer 2010 survey was conducted and archiving, such as ISSNs and DOIs. Jour- production and platform enhancements to our by NISO across representatives of key nal article version metadata are now a facet of journals publishing program that allow clear groups — repository managers, librarians, publishers’ responsibilities in disseminating indications of changes to an article’s version and journal publishers and editors — to learn scholarly material online. -
Cancer Informatics (A)
Cancer Open Access: Full open access to this and thousands of other papers at Informatics http://www.la-press.com. Computational Advances in Cancer Informatics (A) §§Xiaoqian Jiang §§Bairong Shen Assistant Professor of Biomedical Informatics, University Professor of Systems Biology, Soochow University, of California San Diego, La Jolla, CA, USA. Suzhou, Jiangsu, China. §§Rui Chen §§Rong Xu Research Assistant Professor of Computer Science, Hong Assistant Professor, Division of Medical Informatics, Case Kong Baptist University, Kowloon Tong, China. Western Reserve University, Cleveland, OH, USA. §§Samuel Cheng §§Song Yi Associate Professor of Electrical and Computing Research Fellow of Genetics, Harvard Medical School, Engineering, University of Oklahoma, Norman, OK, USA. Boston, MA, USA. §§Xia Jiang Assistant Professor of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA. Supplement Aims and Scope C a n c e r I n f o r m a t i c s r e p r e s e nt s a h y b r i d d i s c i p l i n e e n c o m p a s s i n g §§ Gene Set Enrichment Analysis the fields of oncology, computer science, bioinformatics, sta- §§ Hybrid Computing tistics, computational biology, genomics, proteomics, metabo- §§ Efficient Cloud Storage and Retrieval lomics, pharmacology, and quantitative epidemiology. The §§ Matching of Expression Patterns common bond or challenge that unifies the various disciplines §§ Multi-Modal Analysis is the need to bring order to the massive amounts of data gen- §§ Splice Variations and Chip Seq System Algorithms erated by researchers and clinicians attempting to find the §§ Rapid High-Throughput Analysis underlying causes and effective means of treating cancer. -
(B): Motion Pictures and Literary Works – Text and Data Mining
Submission on behalf of Joint Creators and Copyright Owners Class 7(a) & (b): Motion Pictures and Literary Works – Text and Data Mining [ ] Check here if multimedia evidence is being provided in connection with this comment ITEM A. COMMENTER INFORMATION The Motion Picture Association, Inc. (“MPA”) is a trade association representing some of the world’s largest producers and distributors of motion pictures and other audiovisual entertainment for viewing in theaters, on prerecorded media, over broadcast TV, cable and satellite services, and on the internet. The MPA’s members are: Netflix Studios, LLC, Paramount Pictures Corporation, Sony Pictures Entertainment Inc., Universal City Studios LLC, Walt Disney Studios Motion Pictures, and Warner Bros. Entertainment Inc. Alliance for Recorded Music (“ARM”) is a nonprofit coalition comprising the many artists and record labels who together perform, create, and/or distribute nearly all of the sound recordings commercially released in the United States. Members include the American Association of Independent Music (“A2IM”), the Music Artists Coalition (“MAC”), the Recording Industry Association of America, Inc. (“RIAA”), hundreds of recording artists, the major record companies, and more than 600 independently owned U.S. music labels. The Entertainment Software Association (“ESA”) is the United States trade association serving companies that publish computer and video games for video game consoles, handheld video game devices, personal computers, and the internet. It represents nearly all of the major video game publishers and major video game platform providers in the United States. Represented By: J. Matthew Williams ([email protected]) Sofia Castillo ([email protected]) MITCHELL SILBERBERG & KNUPP LLP 1818 N Street, NW, 7th Floor Washington, D.C. -
Bioinformatics and Biology Insights Structural and Functional Insights
Bioinformatics and Biology Insights OPEN ACCESS Full open access to this and thousands of other papers at REVIEW http://www.la-press.com. Structural and Functional Insights on the Myosin Superfamily Divya P. Syamaladevi1,2, James A. Spudich1,3,* and R. Sowdhamini1,* 1National Centre for Biological Sciences (NCBS-TIFR), GKVK Campus, Bellary Road, Bangalore, India. 2Sugarcane Breeding Institute (SBI-ICAR), Coimbatore, Tamilnadu, India. 3Department of Biochemistry, Stanford University, Stanford, California. *Corresponding authors email: [email protected]; [email protected] Abstract: The myosin superfamily is a versatile group of molecular motors involved in the transport of specific biomolecules, vesicles and organelles in eukaryotic cells. The processivity of myosins along an actin filament and transport of intracellular ‘cargo’ are achieved by generating physical force from chemical energy of ATP followed by appropriate conformational changes. The typical myosin has a head domain, which harbors an ATP binding site, an actin binding site, and a light-chain bound ‘lever arm’, followed often by a coiled coil domain and a cargo binding domain. Evolution of myosins started at the point of evolution of eukaryotes, S. cerevisiae being the simplest one known to contain these molecular motors. The coiled coil domain of the myosin classes II, V and VI in whole genomes of several model organisms display differences in the length and the strength of interactions at the coiled coil interface. Myosin II sequences have long-length coiled coil regions that are predicted to have a highly stable dimeric interface. These are interrupted, how- ever, by regions that are predicted to be unstable, indicating possibilities of alternate conformations, associations to make thick fila- ments, and interactions with other molecules.