Isolation, Detection and Characterization of Aerobic Bacteria from Honey Samples Of
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Kaistella Soli Sp. Nov., Isolated from Oil-Contaminated Soil
A001 Kaistella soli sp. nov., Isolated from Oil-contaminated Soil Dhiraj Kumar Chaudhary1, Ram Hari Dahal2, Dong-Uk Kim3, and Yongseok Hong1* 1Department of Environmental Engineering, Korea University Sejong Campus, 2Department of Microbiology, School of Medicine, Kyungpook National University, 3Department of Biological Science, College of Science and Engineering, Sangji University A light yellow-colored, rod-shaped bacterial strain DKR-2T was isolated from oil-contaminated experimental soil. The strain was Gram-stain-negative, catalase and oxidase positive, and grew at temperature 10–35°C, at pH 6.0– 9.0, and at 0–1.5% (w/v) NaCl concentration. The phylogenetic analysis and 16S rRNA gene sequence analysis suggested that the strain DKR-2T was affiliated to the genus Kaistella, with the closest species being Kaistella haifensis H38T (97.6% sequence similarity). The chemotaxonomic profiles revealed the presence of phosphatidylethanolamine as the principal polar lipids;iso-C15:0, antiso-C15:0, and summed feature 9 (iso-C17:1 9c and/or C16:0 10-methyl) as the main fatty acids; and menaquinone-6 as a major menaquinone. The DNA G + C content was 39.5%. In addition, the average nucleotide identity (ANIu) and in silico DNA–DNA hybridization (dDDH) relatedness values between strain DKR-2T and phylogenically closest members were below the threshold values for species delineation. The polyphasic taxonomic features illustrated in this study clearly implied that strain DKR-2T represents a novel species in the genus Kaistella, for which the name Kaistella soli sp. nov. is proposed with the type strain DKR-2T (= KACC 22070T = NBRC 114725T). [This study was supported by Creative Challenge Research Foundation Support Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF- 2020R1I1A1A01071920).] A002 Chitinibacter bivalviorum sp. -
Laboratory Exercises in Microbiology: Discovering the Unseen World Through Hands-On Investigation
City University of New York (CUNY) CUNY Academic Works Open Educational Resources Queensborough Community College 2016 Laboratory Exercises in Microbiology: Discovering the Unseen World Through Hands-On Investigation Joan Petersen CUNY Queensborough Community College Susan McLaughlin CUNY Queensborough Community College How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/qb_oers/16 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Laboratory Exercises in Microbiology: Discovering the Unseen World through Hands-On Investigation By Dr. Susan McLaughlin & Dr. Joan Petersen Queensborough Community College Laboratory Exercises in Microbiology: Discovering the Unseen World through Hands-On Investigation Table of Contents Preface………………………………………………………………………………………i Acknowledgments…………………………………………………………………………..ii Microbiology Lab Safety Instructions…………………………………………………...... iii Lab 1. Introduction to Microscopy and Diversity of Cell Types……………………......... 1 Lab 2. Introduction to Aseptic Techniques and Growth Media………………………...... 19 Lab 3. Preparation of Bacterial Smears and Introduction to Staining…………………...... 37 Lab 4. Acid fast and Endospore Staining……………………………………………......... 49 Lab 5. Metabolic Activities of Bacteria…………………………………………….…....... 59 Lab 6. Dichotomous Keys……………………………………………………………......... 77 Lab 7. The Effect of Physical Factors on Microbial Growth……………………………... 85 Lab 8. Chemical Control of Microbial Growth—Disinfectants and Antibiotics…………. 99 Lab 9. The Microbiology of Milk and Food………………………………………………. 111 Lab 10. The Eukaryotes………………………………………………………………........ 123 Lab 11. Clinical Microbiology I; Anaerobic pathogens; Vectors of Infectious Disease….. 141 Lab 12. Clinical Microbiology II—Immunology and the Biolog System………………… 153 Lab 13. Putting it all Together: Case Studies in Microbiology…………………………… 163 Appendix I. -
Micrococcus Luteus (Schroeter 1872) Cohn 1872, and Desig- Nation of the Neotype Strain M
INTERNATIONAL JOURNAL of SYSTEMATIC BACTERIOLOGY Vol. 22, No. 4 October 1972, p. 218-223 Printed in U.S.A. Copyright 0 1972 International Association of Microbiological Societies Taxonomic Status of Micrococcus luteus (Schroeter 1872) Cohn 1872, and Desig- nation of the Neotype Strain M. KOCUR, ZDENA PkCOVA, and T. MARTINEC Czechoslovak Collection of Microorganisms, J. E. PurkynE University, Brno, Czechoslovakia An amended description of Micrococcus luteus (Schroeter 1872) Cohn 1872, at present a broad-based species characterized primarily on negative charact er- istics, is proposed on the basis of a taxonomic analysis of 30 strains. CCM 169 (= ATCC 4698) is designated a's the neotype strain of M. luteus. A large number of species of aerobic, diameter and arranged in tetrads and in catalase-positive, yellow-pigmented micrococci irregular clumps of tetrads. Strains CCM 248, have been described, but their incomplete 337, 1674, and 2494 formed packets and characterization has hindered their classifica- irregular clusters of packets. These strains also tion. Some of them are known as Micrococcus produced the largest cells (1.5 to 1.8 pm) of all luteus, M. flaws, M. lysodeikticus, Sarcina of those studied. None of the strains was motile lutea, and S. flava. At present only two of these or produced spores. are generally accepted: M. luteus and M. varians Cultural characteristics. Colonies of all of the (13, 21). strains were circular, convex, and smooth, with Although M. luteus is the type species of the either a glistening or a dull surface. Tetrad- and genus Micrococcus, it is not sufficiently de- packet-forming strains produced matted colo- fined. -
Detection of Staphylococcus Aureus and Other Coagulase Positive Staphylococci in Bovine Raw Milk in Khartoum State by Ikhtyar Ah
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by KhartoumSpace Detection of Staphylococcus aureus and other Coagulase Positive Staphylococci in Bovine Raw Milk in Khartoum State By Ikhtyar Ahmed Hassan Ali B.C.Sc (2003) Supervisor Prof. Mohammed Taha Shigiddi Department of Microbiology Faculty of Veterinary medicine A dissertation submitted to University of Khartoum in partial fulfillment for the requirement of the Degree of Master of Science in Microbiology Department of Microbiology Faculty of veterinary Medicine University of Khartoum 2010 Dedication to my father, mother, brothers and sisters with love I Table of Contents Subject Page Dedication………………………………………………………. I Table of Contents………………………………………………. II List of Figures…………………………………………………… VII List of Table…………………………………………………….. VIII Acknowledgments………………………………………………. IX Abstract…………………………………………………………. X Abstract (Arabic)……………………………………………… XI Introduction…………………………………………………… 1 Chapter One: Literature Review…………………………….. 3 1.1. Health Hazards of Raw Milk…………………………………… 4 1.2. Pathogenic bacteria in milk........................................................ 5 1.3. Microbial quality of raw milk.................................................... 6 1.4. Staphylococci........................................................................... 7 1.4.1. Coagulase positive staphylococci (CPS)……………………… 8 1.4.2. Coagulase negative staphylococci (CNS)……………………… 10 1.5. Staphylococcus aureus………………………………………… 10 1.5.1. Virulence characteristics of S. -
Mannitol Salt Agar, Product Information
MANNITOL SALT AGAR (7143) Intended Use Mannitol Salt Agar is used for the isolation of staphylococci in a laboratory setting. Mannitol Salt Agar is not intended for use in the diagnosis of disease or other conditions in humans. Conforms to Harmonized USP/EP/JP Requirements.1,2,3 Product Summary and Explanation Chapman formulated Mannitol Salt Agar to isolate staphylococci by inhibiting growth of most other bacteria with a high salt concentration.4 Chapman added 7.5% Sodium Chloride to Phenol Red Mannitol Agar, and noted pathogenic strains of staphylococci (coagulase-positive staphylococci) grew luxuriantly and produced yellow colonies with yellow zones. Nonpathogenic staphylococci produced small red colonies with no color change to the surrounding medium. Mannitol Salt Agar is highly selective, and specimens from heavily contaminated sources may be streaked onto this medium without danger of overgrowth.5 Mannitol Salt Agar is recommended for isolating pathogenic staphylococci from specimens, cosmetics, and microbial limit tests.1,2,3,5,6 Principles of the Procedure Enzymatic Digest of Casein, Enzymatic Digest of Animal Tissue, and Beef Extract provide the nitrogen, vitamins, and carbon in Mannitol Salt Agar. D-Mannitol is the carbohydrate source. In high concentrations, Sodium Chloride inhibits most bacteria other than staphylococci. Phenol Red is the pH indicator. Agar is the solidifying agent. Bacteria that grow in the presence of a high salt concentration and ferment mannitol produce acid products, turning the Phenol Red pH indicator from red to yellow. Typical pathogenic staphylococci ferment mannitol and form yellow colonies with yellow zones. Typical non-pathogenic staphylococci do not ferment mannitol and form red colonies. -
Mannitol Salt Agar
MANNITOL SALT AGAR INTENDED USE Remel Mannitol Salt Agar is a solid medium recommended for use in qualitative procedures for selective and differential isolation of staphylococci. SUMMARY AND EXPLANATION In 1942, Koch reported the use of 7.5% sodium chloride as a selective agent for the isolation of staphylococci.1 Chapman confirmed the results of Koch and suggested the addition of 7.5% sodium chloride to phenol red mannitol agar.2 Most strains of coagulase-positive staphylococci grow on Mannitol Salt Agar, producing yellow zones as a result of mannitol fermentation. Coagulase-negative strains of staphylococci produce small colonies with red-colored zones in the surrounding medium. PRINCIPLE Casein and meat peptones supply nitrogen, amino acids, and peptides necessary for bacterial growth. Sodium chloride in a concentration of 7.5% is a selective agent which inhibits many bacteria other than staphylococci. Phenol red is a pH indicator which causes a color change in the medium from red-orange to yellow when acid is produced. Staphylococci colonies that ferment mannitol will be surrounded by a yellow zone, while those that do not ferment mannitol will have a red zone. REAGENTS (CLASSICAL FORMULA)* Sodium Chloride.............................................................. 75.0 g Beef Extract......................................................................1.0 g D-Mannitol....................................................................... 10.0 g Phenol Red.....................................................................25.0 mg Casein Peptone................................................................. 5.0 g Agar................................................................................15.0 g Meat Peptone.................................................................... 5.0 g Demineralized Water..................................................1000.0 ml pH 7.4 ± 0.2 @ 25°C *Adjusted as required to meet performance standards. PROCEDURE 1. Inoculate and streak the specimen as soon as possible after it is received in the laboratory. -
Micrococcus Luteus - Survival in Amber C.L
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@CalPoly Micrococcus luteus - Survival in Amber C.L. Greenblatt , J. Baum , B.Y. Klein , S. Nachshon , V. Koltunov and R.J. Cano Abstract Introduction A growing body of evidence now supports the isolation of There is an accumulating body of data reporting the microorganisms from ancient materials. However, ques persistence of bacteria in what are considered extreme and tions about the stringency of extraction methods and the oligotrophic environments [15, 24, 37]. However, the genetic relatedness of isolated organisms to their closest mechanisms used by these bacteria to survive in such living relatives continue to challenge the authenticity of conditions are poorly understood. One extreme niche that these ancient life forms. Previous studies have success has consistently yielded such bacteria is amber, from fully isolated a number of spore-forming bacteria from which single isolates and assemblages of multiple bacterial organic and inorganic deposits of considerable age whose species have been characterized [3, 8, 10, 17]. Amber is the survival is explained by their ability to enter suspended fossilized remains of organic tree resins. As volatile terp animation for extended periods of time. However, de enoids in these resins evaporate and dissipate under nat spite a number of putative reports, the isolation of non ural forest conditions they leave the nonvolatile fractions spore-forming bacteria and an explanation for their to become fossilized through progressive oxidation and survival have remained enigmatic. Here we describe the polymerization. During the early stages of solidification isolation of non-spore-forming cocci from a 120-million microorganisms, and occasionally larger organisms such year-old block of amber, which by genetic, morphologi as insects [3], can become entrapped in the resins [31]. -
Antibiogram Pattern of Escherichia Coli, Salmonella Spp. and Staphylococcus Spp. Isolates from Broiler Chicken
Nepalese Vet. J. 36: 105 –110 Antibiogram Pattern of Escherichia coli, Salmonella spp. and Staphylococcus spp. Isolates from Broiler Chicken. S. Khanal1*, M. Kandel1, M. P. Shah2 1 Agriculture and Forestry University, Chitwan, Nepal 2Army Equine Breeding Center, Chitwan, Nepal *Corresponding author: [email protected] ABSTRACT This study was conducted on clinical cases of broiler chicken brought at National Avian Disease Investigation Laboratory (NADIL) and Veterinary Teaching Hospital, Agriculture and Forestry University during the period of December, 2018 to April, 2019. The study was aimed to find the antibiogram pattern of Escherichia coli, Salmonella species and Staphylococcus species. A total of 50 ill broiler liver samples were collected and inoculated in Nutrient Agar, XLD agar Mac- Conkey agar, EMB Agar and Mannitol Salt Agar and incubated for 24 hours at 370C. During microbiological examination, prevalence of E.coli was 36 %, Salmonella species was 2% and Staphylococcus species was 8% where as mixed infection was 40%. Antibiogram profile for E. coli isolates were sensitive to Amikacin (88.89%) followed by Colistin (66.67%), Ciprofloxacin (50%), Levofloxacin (42.10%) and Gentamycin (27.78%) while Ceftriaxone (11.11%) and Tetracycline (11.11%) was recorded as least sensitive, for Salmonella species isolates were highly sensitive to Amikacin (100%) and other remaining antibiotics; Ceftriaxone , Gentamicin, Levofloxacin, Ciprofloxacin, Colistin and Tetracycline were observed to be resistant and for Staphylococcus spp. isolates were sensitive to Amikacin (75%) followed by Gentamicin (25%) , Levofloxacin (25%), and Ciprofloxacin (25%) while Tetracycline and Colistin were resistant. In the conclusion, it is strongly recommended to decrease the unethical use of antibiotics to minimize the development of resistance strain of microbes in the future. -
Final Screening Assessment of Micrococcus Luteus Strain ATCC 4698
Final Screening Assessment of Micrococcus luteus strain ATCC 4698 Environment and Climate Change Canada Health Canada February 2018 Cat. No.: En14-313/2018E-PDF ISBN 978-0-660-24725-0 Information contained in this publication or product may be reproduced, in part or in whole, and by any means, for personal or public non-commercial purposes, without charge or further permission, unless otherwise specified. You are asked to: • Exercise due diligence in ensuring the accuracy of the materials reproduced; • Indicate both the complete title of the materials reproduced, as well as the author organization; and • Indicate that the reproduction is a copy of an official work that is published by the Government of Canada and that the reproduction has not been produced in affiliation with or with the endorsement of the Government of Canada. Commercial reproduction and distribution is prohibited except with written permission from the author. For more information, please contact Environment and Climate Change Canada’s Inquiry Centre at 1-800-668-6767 (in Canada only) or 819-997-2800 or email to [email protected]. © Her Majesty the Queen in Right of Canada, represented by the Minister of the Environment and Climate Change, 2016. Aussi disponible en français ii Synopsis Pursuant to paragraph 74(b) of the Canadian Environmental Protection Act, 1999 (CEPA), the Minister of the Environment and the Minister of Health have conducted a screening assessment of Micrococcus luteus (M. luteus) strain ATCC 4698. M. luteus strain ATCC 4698 is a bacterial strain that shares characteristics with other strains of the species. M. -
Detection of Pathogenic Bacteria Staphylococcus Aureus and Salmonella Sp. from Raw Milk Samples of Different Cities of Pakistan
https://www.scirp.org/journal/ns Natural Science, 2020, Vol. 12, (No. 5), pp: 295-306 Detection of Pathogenic Bacteria Staphylococcus aureus and Salmonella sp. from Raw Milk Samples of Different Cities of Pakistan Syeda Asma Bano1, Munazza Hayat1, Tayyaba Samreen1, Mohammad Asif2, Ume Habiba3, Bushra Uzair4 1Department of Microbiology, University of Haripur, Haripur, Pakistan; 2Pakistan Agricultural Research Council P. & D., Islamabad, Pakistan; 3Department of Wild Life and Management, University of Haripur, Haripur, Pakistan; 4Department of Biosciences, International Islamic University, Islamabad, Pakistan Correspondence to: Syeda Asma Bano, Keywords: Raw Milk, Staphylococcus aureus, Salmonella sp., Mannitol Salt Agar, Xylose Lysine Deoxycholate Agar (XLD) Received: March 22, 2020 Accepted: May 19, 2020 Published: May 22, 2020 Copyright © 2020 by author(s) and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY 4.0). http://creativecommons.org/licenses/by/4.0/ Open Access ABSTRACT Food-borne diseases are the main public health problem throughout the world. Milk is im- portant component of human diet including fats, proteins, vitamins and minerals. It is a best source of calcium and phosphorus. Different types of pathogenic bacteria like S. aureus and Salmonella enter in milk and then multiply, after multiplication they become active in causing diseases. These bacteria create serious problems for human health. This study aimed to isolate and identify pathogenic bacteria Staphylococcus aureus and Salmonella from raw milk samples of different cities of Pakistan. Primary screening of raw milk samples was done on the basis of morphological, cultural and biochemical techniques. The final identification was made using 16SrRNA sequence analysis. -
BD Industry Catalog
PRODUCT CATALOG INDUSTRIAL MICROBIOLOGY BD Diagnostics Diagnostic Systems Table of Contents Table of Contents 1. Dehydrated Culture Media and Ingredients 5. Stains & Reagents 1.1 Dehydrated Culture Media and Ingredients .................................................................3 5.1 Gram Stains (Kits) ......................................................................................................75 1.1.1 Dehydrated Culture Media ......................................................................................... 3 5.2 Stains and Indicators ..................................................................................................75 5 1.1.2 Additives ...................................................................................................................31 5.3. Reagents and Enzymes ..............................................................................................75 1.2 Media and Ingredients ...............................................................................................34 1 6. Identification and Quality Control Products 1.2.1 Enrichments and Enzymes .........................................................................................34 6.1 BBL™ Crystal™ Identification Systems ..........................................................................79 1.2.2 Meat Peptones and Media ........................................................................................35 6.2 BBL™ Dryslide™ ..........................................................................................................80 -
Unknown Report Brynn Allen Bacteria: Micrococcus Luteus and Enterobacter Aerogenes My Steps: GR+ & GR- One: Gram Stain Both
Unknown Report Brynn Allen Bacteria: Micrococcus Luteus and Enterobacter Aerogenes My Steps: GR+ & GR- One: Gram stain both bacterias labeled “6” and “F.” Purpose: Observe what they may be under oil immersion lens after gram staining. Observations: Gram positive cocci appear to be tetrads in 6 plate, and Gram negative bacillus with long rods in F plate. GR+ & GR- Two: Inoculate the two fresh bacteria’s given to me from the tubes onto Nutrient Agar plates. Incubate for 24 hours. Purpose: Detect growth from my two plated organisms and see if any colors or distinct colonies have revealed themselves. Observations: 6 Plate with Gram positive bacteria reveals vivid yellow streak isolation on it’s plate. F plate reveals a light pink, almost transparent color with high motility and a filamentous colony appearance. GR+ & GR- Three: Performed catalase test on GR+ bacteria from 6 plate and GR- from F plate. Purpose: To see if the bacteria neutralizes toxic forms of oxygen metabolites (Hydrogen Peroxide h2O2) Observations: Bacteria bubbled once catalase solution was applied to both bacteria’s. This indicates a Catalase positive result. GR+ Four: Performed streak isolation on Gr+ bacteria onto an MSA plate. Incubated for 24-48 hours. Purpose: To see if this bacteria can survive in high salt concentration, if it can — the pH will decrease to 6.8 and will change from red to yellow, therefore indicating it uses mannitol. If the pH goes up to 7.4, it uses amino acids and frees ammonia, it will change from red to pink. Observations: Gr+ bacteria had no change once checked after incubation.